| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 3452575 = | 54 (1.090) | 3 (0.070) | 3/236 | NT | 6.3% | coding (872/2478 nt) | PP_3069 | outer membrane autotransporter |
| ? | NC_002947 | 3452645 = | 39 (0.860) | coding (802/2478 nt) | PP_3069 | outer membrane autotransporter | |||||
ACGGCACTGCTCAAAGGCCTTACGCCCGAGGTGCTGAGTATCACGTTGGACGGCGGCGAAGGTAACGACAGCCTGACGTTCGATGCCAGCCAGCCGGCAGGCGGTGCCCACTATGTGAACTGGGAGCGCGTGGCGCTGAACAACGGCAGCCGGCTGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/3452732‑3452575‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccggctggcTGGCATCGAACGTCAGGCTGTCGTTACCTTCGCCGCCGTCCAACGTGATACTCAGCACCTCGGGCGTAAGGCCTTTGAGCAGTGCCGTGTCATCACCTGGCCCGGCATCCACGCGCCCGCCAATACGGCCACCGTCCCAGGT > NC_002947/3452645‑3452786 ACGGCACTGCTCAAAGGCCTTACGCCCGAGGTGCTGAGTATCACGTTGGACGGCGGCGAAGGTAACGACAGCCTGACGTTCGATGCCAGCCAGCCGGCAGGCGGTGCCCACTATGTGAACTGGGAGCGCGTGGCGCTGAACAACGGCAG > 6:203214/1‑149 TGCTCAAAGGCCTTACGCCCGAGGTGCTGAGTATCACGTTGGACGGCGGCGAAGGTAACGACAGCCTGACGTTCGATGCCAGCCAGCCGGCAGGCGGTGCCCACTATGTGAACTGGGAGCGCGTGGCGCTGAACAACGGCAGCCGGCTG > 3:203916/1‑149 CTCAAAGGCCTTACGCCCGAGGTGCTGAGTATCACGTTGGACGGCGGCGAAGGTAACGACAGCCTGACGTTCGATGCCAGCCAGCCGGCAGGCGGTGCCCACTATGTGAACTGGGAGCGCGTGGCGCTGAACAACGGCAGCCGGCTG < 5:231426/147‑1 TCAAAGGCCTTACGCCCGAGGTGCTGAGTATCACGTTGGACGGCGGCGAAGGTAACGACAGCCTGACGTTCGATGCCAGCCAGCCGGCAGGCGGTGCCCACTATGTGAACTGGGAGCGCGTGGCGCTGAACAACGGCAGCCGGCTGGC > 3:283770/1‑148 GTATCACGTTGGACGGCGGCGAAGGTAACGACAGCCTGACGTTCGATGCCAGCCAGCCGGCAGGCGGTGCCCACTATGTGAACTGGGAGCGCGTGGCGCTGAACAACGGCAGCCGGCTG < 1:32058/119‑1 GTATCACGTTGGACGGCGGCGAAGGTAACGACAGCCTGACGTTCGATGCCAGCCAGCCGGCAGGCGGTGCCCACTATGTGAACTGGGAGCGCGTGGCGCTGAACAACGGCAGCCGGCTG > 2:32058/1‑119 GGACGGCGGCGAAGGTAACGACAGCCTGACGTTCGATGCCAGCCAGCCGGCAGGCGGTGCCCACTATGTGAACTGGGAGCGCGTGGCGCTGAACAACGGCAGCCG < 7:12811/105‑1 GGACGGCGGCGAAGGTAACGACAGCCTGACGTTCGATGCCAGCCAGCCGGCAGGCGGTGCCCACTATGTGAACTGGGAGCGCGTGGCGCTGAACAACGGCAGCCG > 8:12811/1‑105 CAGCCAGCCGGCAGGCGGTGCCCACTATGTGAACTGGGAGCGCGTGGCGCTGAACAACGGCAGCCGGCTGGCTGGCATCGAACGTCAGGCTGTCGTTACCTTCGCCGCCGTCCAACGTGATACTCAGCACCTCGGGCGTAAGGCCTTTG > 7:28738/1‑149 CAGCCGGCAGGCGGTGCTCACTATGTGAACTGGGAGCGCGTGGCGCTGAACAACGGCAGCCGGCTGGCTGGCATCGAACGTCAGGCTGTCGTTACCTTCGCCGCCGTCCAACGTGATACTCAGCACCTCGGGCGTAAGGCCTTTGAG > 6:176650/1‑147 GCGGTGCTCACTATGTGAACTGGGAGCGCGTGGCGCTGAACAACGGCAGCCGGCTGGCTGGCATCGAACGTCAGGCTGTCGTTACCTTCGCCGCCGTCCAACGTGATACTCAGCACCTCGGGCGTAAGGCCTTTGAGCAGTGCCGTGTC < 5:176650/149‑1 CCGGCTGGCTGGCATCGAACGTCAGGCTGTCGTTACCTTCGCCGCCGTCCAACGTGATACTCAGCACCTCGGGCGTAAGGCCTTTGAGCAGTGCCGTGTCATCACCTGGCCCGGCATCCACGGGCCCGCCAATACGGCCACCGTCCCAG > 2:137916/1‑149 GGCTGGCTGGCATCGAACGTCAGGCTGTCGTTACCTTCGCCGCCGTCCAACGTGATACTCAGCACCTCGGGCGTAAGGCCTTTGAGCAGTGCCGTGTCATCACCTGGCCCGGCATCCACGCGCCCGCCAATACGGCCACCGTCCCAGGT < 6:231426/149‑1 ACGGCACTGCTCAAAGGCCTTACGCCCGAGGTGCTGAGTATCACGTTGGACGGCGGCGAAGGTAACGACAGCCTGACGTTCGATGCCAGCCAGCCGGCAGGCGGTGCCCACTATGTGAACTGGGAGCGCGTGGCGCTGAACAACGGCAGCCGGCTGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/3452732‑3452575‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccggctggcTGGCATCGAACGTCAGGCTGTCGTTACCTTCGCCGCCGTCCAACGTGATACTCAGCACCTCGGGCGTAAGGCCTTTGAGCAGTGCCGTGTCATCACCTGGCCCGGCATCCACGCGCCCGCCAATACGGCCACCGTCCCAGGT > NC_002947/3452645‑3452786 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |