New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3452575 =	54 (1.090)	3 (0.070)	3/236	NT	6.3%	coding (872/2478 nt)	PP_3069	outer membrane autotransporter
	?	NC_002947	3452645 =	39 (0.860)					coding (802/2478 nt)	PP_3069	outer membrane autotransporter

GATGCGGCTGCTGGCGTCGAGGGCGAGGCTGCCCGTGCTGCTGTTGCTGTCGCCCAGTACCAGCGTGTCATCC‑AGTGCCAGCCGGCTGCCGTTGTTCAGCGCCACGCGCTCCCAGTTCACATAGTGGGCACCGCCTGCCGGCTGGCTGGCATCGAACGTCAGGCTGTCGTTACCTTCGCCGCCGTCCAACGTGATACTCAGCACCTCGGGCGTAAGGCCTTTGAGCAGTGCCGTGTCATCA‑CCTGGCCCGGCATCCACGCGCCCGCCAATACGGCCACCGTCCCAGGT  >  NC_002947/3452499‑3452786                                                                                                                                                    |                                                                                                                                               caaaggccttacgcccgaggtgctgagtatcacgttggacggcggcgaaggtaacgacagcctgacgttcgatgccaGCCAGCCGGCTGCCGTTGTTCAGCGCCACGCGCTCCCAGTTCACATAGTGGGCACCGCCTGCCGgctggctg                                                                                                                                               >  7:28738‑M1/78‑149 (MQ=255)       gctgctGGCGTCGAGGGCGAGGCTGCCCGTGCTGCTGTTGCTGTCGCCCAGTACCAGCGTGTCATCC‑AGTGCCAGCCGGCTGCCGTTGTTCAGCGCCACGCGCTCCCAGTTCACATAGTGGGCACCGCCTGCCGGCTGGCTGGCATCGa                                                                                                                                        <  5:229949/149‑1 (MQ=255)            tgGCGTCGAGGGCGAGGCTGCCCGTGCTGCTGTTGCTGTCGCCCAGTACCAGCGTGTCATCC‑AGTGCCAGCCGGCTGCCGTTGTTCAGCGCCACGCGCTCCCAGTTCACATAGTGGGCACCGCCTGCCGGCTGGCTGGCATCGAACGTc                                                                                                                                   >  6:220635/1‑149 (MQ=255)            tgGCGTCGAGGGCGAGGCTGCCCGTGCTGCTGTTGCTGTCGCCCAGTACCAGCGTGTCATCC‑AGTGCCAGCCGGCTGCCGTTGTTCAGCGCCACGCGCTCCCAGTCCACATAGTGGGCACCGCCTGCCGGCTGGCTGGCATCGAACGt                                                                                                                                    >  6:129314/1‑148 (MQ=255)              gCGTCGAGGGCGAGGCTGCCCGTGCTGCTGTTGCTGTCGCCCAGTACCAGCGTGTCATCC‑AGTGCCAGCCGGCTGCCGTTGTTCAGCGCCACGCGCTCCCAGTTCACATAGTGGGCACCGCCTGCCGGCTGGCTGGCATCGAACGTc                                                                                                                                   <  4:292933/147‑1 (MQ=255)                 tCGAGGGCGAGGCTGCCCGTGCTGCTGTTGCTGTCGCCCAGTACCAGCGTGTCATCC‑AGTGCCAGCCGGCTGCCGTTGTTCAGCGCCACGCGCTCCCAGTTCACATAGTGGGCACCGCCTGCCGGCTGGCTGGCATCGAACGTCAGGCt                                                                                                                              >  6:213475/1‑149 (MQ=255)                      ggCGAGGCTGCCCGTGCTGCTGTTGCTGTCGCCCAGTACCAGCGTGTCATCC‑AGTGCCAGCCGGCTGCCGTTGTTCAGCGCCACGCGCTCCCAGTTCACATAGTGGGCACCGCCTGCCGGCTGGCTGGCATCGAACGTCAGGCTGTCGt                                                                                                                         >  5:203214/1‑149 (MQ=255)                      ggCGAGGCTGCCCGTGCTGCTGTTGCTGTCGCCCAGTACCAGCGTGTCATCC‑AGTGCCAGCCGGCTGCCGTTGTTCAGCGCCACGCGCTCCCAGTTCACATAGTGGGCACCGCCTGCCGGCTGGCTGGCATCGAACGTCAGGCTGTCGt                                                                                                                         >  7:235493/1‑149 (MQ=255)                        cGAGGCTGCCCGTGCTGCTGTTGCTGTCGCCCAGTACCAGCGTGTCATCC‑AGTGCCAGCCGGCTGCCGTTGTTCAGCGCCACGCGCTCCCAGTTCACATAGTGGGCACCGCCTGCCGGCTGGCTGGCATCGAACGTCAGGCTGTCGTTa                                                                                                                       <  1:293760/149‑1 (MQ=255)                         gAGGCTGCCCGTGCTGCTGTTGCTGTCGCCCAGTACCAGCGTGTCATCC‑AGTGCCAGCCGGCTGCCGTTGTTCAGCGCCACGCGCTCCCAGTTCACATAGTGGGCACCGCCTGCCGGCTGGCTGGCATCGAACGTCAGGCTGTCGTTAc                                                                                                                      <  3:133521/149‑1 (MQ=255)                               gCCCGTGCTGCTGTTGCTGTCGCCCAGTACCAGCGTGTCATCCGAGTGCCAGCCGGCTGCCGTTGTTCAGCGCCACGCGCTCCCAGTTCACATAGTGGGCACCGCCTGCCGgctggctg                                                                                                                                               >  1:220587/1‑119 (MQ=255)                                      ctgctgTTGCTGTCGCCCAGTACCAGCGTGTCATCC‑AGTGCCAGCCGGCTGCCGTTGTTCAGCGCCACGCGCTCCCAGTTCACATAGTGGGCACCGCCTGCCGGCTGGCTGGCATCGAACGTCAGGCTGTCGTTACCTTCGCCGCCGt                                                                                                          <  5:220635/148‑1 (MQ=255)                                       tgctgttgctgtCGCCCAGTACCAGCGTGTCATCC‑AGTGCCAGCCGGCTGCCGTTGTTCAGCGCCACGCGCTCCCAGTTCACATAGTGGGCACCGCCTGCCGGCTGGCTGGCATCGAACGTCAGGCTGTCGTTACCTTCGCCGCCGTc                                                                                                         >  4:283770/1‑148 (MQ=255)                                          tgttgctgtCGCCCAGTACCAGCGTGTCATCC‑AGTGCCAGCCGGCTGCCGTTGTTCAGCGCCACGCGCTCCCAGTTCACATAGTGGGCACCGCCTGCCGGCTGGCTGGCATCGAACGTCAGGCTGTCGTTACCTTCGCCGCCGTCCAAc                                                                                                     >  8:71714/1‑149 (MQ=255)                                          tgttgctgtCGCCCAGTACCAGCGTGTCATCC‑AGTGCCAGCCGGCTGCCGTTGTTCAGCGCCACGCGCGCCCAGTTCACATAGTGGGCACCGCCTGCCGGCTGGCTGGCATCGAACGTCAGGCTGTCGTTACCTTCGCCGCCGTCCAAc                                                                                                     >  4:177902/1‑149 (MQ=255)                                            ttgctgtCGCCCAGTACCAGCGTGTCATCC‑AGTGCCAGCCGGCTGCCGTTGTTCAGCGCCACGCGCTCCCAGTTCACATAGTGGGCACCGCCTGCCGGCTGGCTGGCATCGAACGTCAGGCTGTCGTTACCTTCGCCGCCGTCCAAc                                                                                                     <  3:177902/147‑1 (MQ=255)                                                tgtCGCCCAGTACCAGCGTGTCATCC‑AGTGCCAGCCGGCTGCCGTTGTTCAGCGCCACGCGCTCCCAGTTCACATAGTGGGCACCGCCTGCCGGCTGGCTGGCATCGAACGTCAGGCTGTCGTTACCTTCGCCGCCGTCCAACGTGAt                                                                                                >  2:47961/1‑148 (MQ=255)                                                 gtCGCCCAGTACCAGCGTGTCATCC‑AGTGCCAGCCGGCTGCCGTTGTTCAGCGCCACGCGCTCCCAGTTCACATAGTGGGCACCGCCTGCCGGCTGGCTGGCATCGAACGTCAGGCTGTCGTTACCTTCGCCGCCGTCCaa                                                                                                      >  4:292611/1‑141 (MQ=255)                                                 gtCGCCCAGTACCAGCGTGTCATCC‑AGTGCCAGCCGGCTGCCGTTGTTCAGCGCCACGCGCTCCCAGTTCACATAGTGGGCACCGCCTGCCGGCTGGCTGGCATCGAACGTCAGGCTGTCGTTACCTTCGCCGCCGTCCaa                                                                                                      <  3:292611/141‑1 (MQ=255)                                                  tCGCCCAGTACCAGCGTGTCATCC‑AGTGCCAGCCGGCTGCCGTTGTTCAGCGCCACGCGCTCCCAGTTCACATAGTGGGCACCGCCTGCCGGCTGGCTGGCATCGAACGTCAGGCTGTCGTTACCTTCGCCGCCGTCCAACGTGATACt                                                                                             <  7:71714/149‑1 (MQ=255)                                                    gCCCAGTACCAGCGTGTCATCC‑AGTGCCAGCCGGCTGCCGTTGTTCAGCGCCACGCGCTCCCAGTTCACATAGTGGGCACCGCCTGCCGGCTGGCTGGCATCGAACGTCAGGCTGTCGTTACCTTCGCCGCCGTCCAACGTGATACt                                                                                             >  5:88214/1‑147 (MQ=255)                                                    gCCCAGTACCAGCGTGTCATCC‑AGTGCCAGCCGGCTGCCGTTGTTCAGCGCCACGCGCTCCCAGTTCACATAGTGGGCACCGCCTGCCGGCTGGCTGGCATCGAACGTCAGGCTGTCGTTACCTTCGCCGCCGTCCAACGTGATACTCa                                                                                           <  5:213475/149‑1 (MQ=255)                                                    gCCCAGTACCAGCGTGTCATAC‑AGTGCCAGCCGGCTGCCGTTGTTCAGCGCCACGCGCTCCCAGTTCACATAGTGGGCACCGCCTTCCGGCTGGCTGGCATCGAAAGTAAGGCTGTCGTTACCTTAGCAGCCGTCCACCGTGAAACTc                                                                                            >  8:143378/1‑148 (MQ=255)                                                     cccAGTACCAGCGTGTCATCC‑AGTGCCAGCCGGCTGCCGTTGTTCAGCGCCACGCGCTCCCAGTTCACATAGTGGGCACCGCCTGCCGGCTGGCTGGCATCGAACGTc                                                                                                                                   >  7:68657/1‑108 (MQ=255)                                                            ccAGCGTGTCATCC‑AGTGCCAGCCGGCTGCCGTTGTTCAGCGCCACGCGCTCCCAGTTCACATAGTGGGCACCGCCTGCCGGCTGGCTGGCATCGAACGTCAGGCTGTCGTTACCTTCGCCGCCGTCCAACGTGATACTCAGCACCTc                                                                                    <  4:151568/148‑1 (MQ=255)                                                             cAGCGTGTCATCC‑AGTGCCAGCCGGCTGCCGTTGGTCAGCGCCACGCGCTCCCAGTTCACATAGTGGTCACCGCCTGCCGGCTGGCTGGCATCGAACGGCAGGCTGTCGTTACCTTCGCCGCCGTCCAACGTGATACTCAGCACCTCgg                                                                                  <  7:143378/149‑1 (MQ=255)                                                              aGCGTGTCATCC‑AGTGCCAGCCGGCTGCCGTTGTTCAGCGCCACGCGCTCCCAGTTCACATAGTGGGCACCGCCTGCCGGCTGGCTGGCATCGAACGTCAGGCTGTCGTTACCTTCGCCGCCGTCCAACGTGATACTCAGCACCTCggg                                                                                 <  8:235493/149‑1 (MQ=255)                                                               gCGTGTCATCC‑AGTGCCAGCCGGCTGCCGTTGTTCAGCGCCACGCGCTCCCAGTTCACATAGTGGGCACCGCCTGCCGGCTGGCTGGCATCGAACGTCAGGCTGTCGTTACCTTCGCCGCCGTCCAACGTGATACTc                                                                                            >  7:173477/1‑137 (MQ=255)                                                               gCGTGTCATCC‑AGTGCCAGCCGGCTGCCGTTGTTCAGCGCCACGCGCTCCCAGTTCACATAGTGGGCACCGCCTGCCGGCTGGCTGGCATCGAACGTCAGGCTGTCGTTACCTTCGCCGCCGTCCAACGTGATACTc                                                                                            <  8:173477/137‑1 (MQ=255)                                                                    tCATCC‑AGTGCCAGCCGGCTGCCGTTGTTCAGCGCCACGCGCTCCCAGTTCACATAGTGGGCACCGCCTGCCGGCTGGCTGGCATCGAACGTCAGGCTGTCGTTACCTTCGCCGCCGTCCAACGTGATACTCAGCACCTCGGGCGTAAg                                                                           >  4:203916/1‑149 (MQ=255)                                                                    tCATCC‑AGTGCCAGCCGGCTGCCGTTGTTCAGCGCCACGCGCTCCCAGTTCACATAGTGGGCACCGCCTGCCGGCTGGCTGGCATCGAACGTCAGGCTGTCGTTACCTTCGCCGCCGTCCAACGTGATACTCAGCACCTCGGGCGTAAg                                                                           <  6:88214/149‑1 (MQ=255)                                                                       tCC‑AGTGCCAGCCGGCTGCCGTTGTTCAGCGCCACGCGCTCCCAGTTCACATAGTGGGCACCGCCTGCCGGCTGGCTGGCATCGAACGTCAGGCTGTCGTTACCTTCGCCGCCGTCCAACGTGATACTCAGCACCTCGGGCGTAAGGcc                                                                        <  5:20775/149‑1 (MQ=255)                                                                       tCC‑AGTGCCAGCCGGCTGCCGTTGTTCAGCGCCACGCGCTCCCAGTTCACATAGTGGGCACCGCCTGCCGGCTGGCTGGCATCGAACGTCAGGCTGTCGTTACCTTCGCCGCCGTCCAACGTGATACTCAGCACCTCGGGCGTAAGGcc                                                                        >  6:20775/1‑149 (MQ=255)                                                                           aGTGCCAGCCGGCTGCCGTTGTTCAGCGCCACGCGCTCCCAGTCCACATAGTGGGCACCGCCTGCCGGCTGGCTGGCATCGAACGTCAGGCTGTCGTTACCTTCGCCGCCGTCCAACGTGATACTCAGCACCTCGGGCGTAAGGCCttt                                                                     <  5:129314/149‑1 (MQ=255)                                                                            cagccagccggcaggcggtgcccactatgtgaactgggagcgcgtggcgctgaacaacggcagccggctggcTGGCATCGAACGTCAGGCTGTCGTTACCTTCGCCGCCGTCCAACGTGATACTCAGCACCTCGGGCGTAAGGCCTTTg                                                                    >  7:28738‑M2/73‑149 (MQ=255)                                                                              GCCAGCCGGCTGCCGTTGTTCAGCGCCACGCGCTCCCAGTTCACATAGTGGGCACCGCCTGCCGGCTGGCTGGCATCGAACGTCAGGCTGTCGTTACCTTCGCCGCCGTCCAACGTGATACTCAGCACCTCGGGCGTAAGGCCTTTGa                                                                   >  3:283770‑M1/1‑148 (MQ=255)                                                                                cagccggcaggcggtgctcactatgtgaactgggagcgcgtggcgctgaacaacggcagccggctggcTGGCATCGAACGTCAGGCTGTCGTTACCTTCGCCGCCGTCCAACGTGATACTCAGCACCTCGGGCGTAAGGCCTTTGAg                                                                  >  6:176650‑M2/69‑147 (MQ=255)                                                                                CAGCCGGCTGCCGTTGTTCAGCGCCACGCGCTCCCAGTTCACATAGTGGGCACCGCCTGCCGGCTGGCTGGCATCGAACGTCAGGCTGTCGTTACCTTCGCCGCCGTCCAACGTGATAc                                                                                              <  1:32058‑M1/119‑1 (MQ=255)                                                                                CAGCCGGCTGCCGTTGTTCAGCGCCACGCGCTCCCAGTTCACATAGTGGGCACCGCCTGCCGGCTGGCTGGCATCGAACGTCAGGCTGTCGTTACCTTCGCCGCCGTCCAACGTGATAc                                                                                              >  2:32058‑M1/1‑119 (MQ=255)                                                                                CAGCCGGCTGCCGTTGTTCAGCGCCACGCGCTCCCAGTTCACATAGTGGGCACCGCCTGCCGGCTGGCTGGCATCGAACGTCAGGCTGTCGTTACCTTCGCCGCCGTCCAACGTGATACTCAGCACCTCGGGCGTAAGGCCTTTGAg                                                                  <  5:231426‑M1/147‑1 (MQ=255)                                                                                CAGCCGGCTGCCGTTGTTCAGCGCCACGCGCTCCCAGTTCACATAGTGGGCACCGCCTGCCGGCTGGCTGGCATCGAACGTCAGGCTGTCGTTACCTTCGCCGCCGTCCAACGTGATACTCAGCACCTCGGGCGTAAGGCCTTTGAGCa                                                                >  3:203916‑M1/1‑149 (MQ=255)                                                                                    CGGCTGCCGTTGTTCAGCGCCACGCGCTCCCAGTTCACATAGTGGGCACCGCCTGCCGGCTGGCTGGCATCGAACGTCAGGCTGTCGTTACCTTCGCCGCCGTcc                                                                                                        >  8:12811‑M1/1‑105 (MQ=255)                                                                                    CGGCTGCCGTTGTTCAGCGCCACGCGCTCCCAGTTCACATAGTGGGCACCGCCTGCCGGCTGGCTGGCATCGAACGTCAGGCTGTCGTTACCTTCGCCGCCGTcc                                                                                                        <  7:12811‑M1/105‑1 (MQ=255)                                                                                       CTGCCGTTGTTCAGCGCCACGCGCTCCCAGTTCACATAGTGGGCACCGCCTGCCGGCTGGCTGGCATCGAACGTCAGGCTGTCGTTACCTTCGCCGCCGTCCAACGTGATACTCAGCACCTCGGGCGTAAGGCCTTTGAGCAGTGCCGt                                                         >  6:203214‑M1/1‑149 (MQ=255)                                                                                          gcggtgctcactatgtgaactgggagcgcgtggcgctgaacaacggcagccggctggcTGGCATCGAACGTCAGGCTGTCGTTACCTTCGCCGCCGTCCAACGTGATACTCAGCACCTCGGGCGTAAGGCCTTTGAGCAGTGCCGTGtc                                                      <  5:176650‑M2/91‑1 (MQ=255)                                                                                            gttgttCAGCGCCACGCGCTCCCAGTTCACATAGTGGGCACCGCCTGCCGGCTGGCTTGCATCGAACGTCAGGATGTCGTTACCTTCGCCGCCGTCCAACGTGATACTCAGCACCTCGGGCGTAAGGCCTTTGAGCAGTGCCGTGtca                                                     >  1:21403/1‑148 (MQ=255)                                                                                                             gcTCCCAGTTCACATAGTGGGCACCGCCTGCCGGCTTGCTGGCATCGAACGTCAGGCTGTCGTTACCTTCGCCGCCGTCCAACGTGATACTCAGCACCTTGGGCGTAAGGCCTTTGAGCAGTGCCGTGTCATCA‑CCTGTCCCGGCATcc                                  <  4:83716/149‑1 (MQ=255)                                                                                                               tCCCAGTTCACATAGTGGGCACCGCCTGCCGGCTGGCTGGCATCGAACGTCAGGCTGTCGTTACCTTCGCCGCCGTCCAACGTGATACTCAGCACCTCGGGCGTAAg                                                                           >  2:288047/1‑107 (MQ=255)                                                                                                               tCCCAGTTCACATAGTGGGCACCGCCTGCCGGCTGGCTGGCATCGAACGTCAGGCTGTCGTTACCTTCGCCGCCGTCCAACGTGATACTCAGCACCTCGGGCGTAAg                                                                           <  1:288047/107‑1 (MQ=255)                                                                                                                              tGGGCACCGCCTGCCGGCTGGCTGGCATCGAACGTCAGGCTGTCGTTACCTTCGCCGCCGTCCAACGTGATACTCAGCACCTCGGGCGTAAGGCCTTTGAGCAGTGCCGTGTCATCA‑CCTGGCCCGGCATCCACGCGCCCGCCAATACg                 <  1:116157/149‑1 (MQ=255)                                                                                                                                  cACCGCCTGCCGGCTGGCTGGCATCGAACGTCAGGCTGTCGTTACCTTCGCCGCCGTCCAACGTGATACTCAGCACCTCGGGCGTAAGGCCTTTGAGCAGTGCCGTGTCATCA‑CCTGGCCCGGCATCCACGCGCCCGCCAATACGGCCa             >  3:26456/1‑149 (MQ=255)                                                                                                                                   aCCGCCTGCCGGCTGGCTGGCATCGAACGTCAGGCTGTCGTTACCTTCGCCGCCGTCCAACGTGATACTCAGCACCTCGGGCGTAAGGCCTTTGAGCAGTGCCGTGTCATCACCCTGGCCCGGCATCCACGCGCCCGCCAATACGGCCa             <  1:47961/149‑1 (MQ=255)                                                                                                                                           ccggctggcTGGCATCGAACGTCAGGCTGTCGTTACCTTCGCCGCCGTCCAACGTGATACTCAGCACCTCGGGCGTAAGGCCTTTGAGCAGTGCCGTGTCATCA‑CCTGGCCCGGCATCCACGGGCCCGCCAATACGGCCACCGTCCCAg    >  2:137916‑M2/10‑149 (MQ=255)                                                                                                                                             ggctggcTGGCATCGAACGTCAGGCTGTCGTTACCTTCGCCGCCGTCCAACGTGATACTCAGCACCTCGGGCGTAAGGCCTTTGAGCAGTGCCGTGTCATCA‑CCTGGCCCGGCATCCACGCGCCCGCCAATACGGCCACCGTCCCAGGt  <  6:231426‑M2/142‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                               GATGCGGCTGCTGGCGTCGAGGGCGAGGCTGCCCGTGCTGCTGTTGCTGTCGCCCAGTACCAGCGTGTCATCC‑AGTGCCAGCCGGCTGCCGTTGTTCAGCGCCACGCGCTCCCAGTTCACATAGTGGGCACCGCCTGCCGGCTGGCTGGCATCGAACGTCAGGCTGTCGTTACCTTCGCCGCCGTCCAACGTGATACTCAGCACCTCGGGCGTAAGGCCTTTGAGCAGTGCCGTGTCATCA‑CCTGGCCCGGCATCCACGCGCCCGCCAATACGGCCACCGTCCCAGGT  >  NC_002947/3452499‑3452786

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.