| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 4125982 | 35 (0.710) | 4 (0.090) | 4/242 | NT | 9.4% | intergenic (‑151/+35) | PP_3629/opdT‑II | hypothetical protein/tyrosine‑specific outer membrane porin D |
| ? | NC_002947 | = 4126008 | 44 (0.940) | intergenic (‑177/+9) | PP_3629/opdT‑II | hypothetical protein/tyrosine‑specific outer membrane porin D | |||||
GTCTTGCTCCAAGATCGAAGGTGAGCCTTGAGTCTAGCCCCATAGCCCCGGCGTACCGGTAGCACCTGACCACCTGATGCAAATGCAGGATTGATAGGCGATCAAGCCGATAAAAAAAGCGCCCCAAGCGGAGCGCCAGAAAATCCACCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/4125833‑4125982‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tccacctTGGCAACCTTGTTGCTCCTTTGGTTTAGGTGGATTTTCTGGCGCTCCGCTTGGGGCGCTTTTTTTATCGGCTTGATCGCCTATCAATCCTGCATTTGCATCAGGTGGTCAGGTGCTACCGGTACGCCGGGGCTATGGGGCTAGAC < NC_002947/4126008‑4125864 GTCTTTCTCCAAGATCGAAGGTGAGCCTTGAGTCTAGCCCCATAGCCCCGGCGTACCGGTAGCACCTGACCACCTGATGCAAATGCAGGATTGATAGGCGATCAAGCCGATAAAAAAAGCGCCCCAAGCGGAGCGCCAGAAAATCCAC < 7:111669/148‑1GTCTTGCTCCAAGATCGAAGGTGAGCCTTGAGTCTAGCCCCATAGCCCCGGCGTACCGGTAGCACCTGACCACCTGATGCAAATTAAGTATTGATAGGCGATCAAGCCGATAAAAAAAGCGCCCCAAGCGGAGCGCCAGAAAATCCAC < 3:241855/148‑1GTCTTGCTCCAAGATCGAAGGTGAGCCTTGAGTCTAGCCCCATAGCCCCGGCGTACCGGTAGCACCTGACCACCTGATGCAAATGCAGGATTGATAGGCGATCAAGCCGATAAAAAAAGCGCCCCAAGCGGAGCGCCAGAAAATCCAC < 7:30218/148‑1 TAGCCCCATAGCCCCGGCGTACCGGTAGCACCTGACCACCTGATGCAAATGCAGGATTGATAGGCGATCAAGCCGATAAAAAAAGCGCCCCAAGCGGAGCGCCAGAAAATCCACCTTGGCAACCTTGTTGCTCCTTTGGTTTAGGT < 1:308427/146‑1 TAGCCCCATAGCCCCGGCGTACCGGTAGCACCTGACCACCTGATGCAAATGCAGGATTGATAGGCGATCAAGCCGATAAAAAAAGCGCCCCAAGCGGAGCGCCAGAAAATCCACCTTGGCAACCTTGTTGCTCCTTTGGTTTAGGT > 2:308427/1‑146 AGCACCTGACCACCTGATGCAAATGCAGGATTGATAGGCGATCAAGCCGATAAAAAAAGCGCCCCAAGCGGAGCGCCAGAAAATGCACCTTGGCAACCTTGTTGCTCCTTTGGTTTAGGTGGATTTTCTG < 1:225824/130‑1 AGCACCTGACCACCTGATGCAAATGCAGGATTGATAGGCGATCAAGCCGATAAAAAAAGCGCCCCAAGCGGAGCGCCAGAAAATCCACCTTGGCAACCTTGTTGCTCCTTTGGTTTAGGTGGATTTTCTG > 2:225824/1‑130 CTGACCACCTGATGCAAATGCAGGATTGATAGGCGATCAAGCCGATAAAAAAAGCGCCCCAAGCGGAGCGCCAGAAAATCCAC < 7:144058/83‑1 CTGACCACCTGATGCAAATGCAGGATTGATAGGCGATCAAGCCGATAAAAAAAGCGCCCCAAGCGGAGCGCCAGAAAATCCAC > 8:144058/1‑83 CACCTTGGCAACCTTGTTGCTCCTTTGGTTTAGGTGGATTTTCTGGCGCTCCGCTTGGGGCGCTTTTTTTATCGGCTTGATCGCCTATCAATCCTGCATTTGCATCAGGTGGTCAGGTGCTACCGGTACGCCGGGGCTATGGGGCTAG > 3:10868/1‑148 ACCTTGGCAACCTTGTTGCTCCTTTGGTTTAGGTGGATTTTCTGGCGCTCCGCTTGGGGCGCTTTTTTTATCGGCTTGATCGCCTATCAATCCTGCATTTGCATCAGGTGGTCAGGTGCTACAGGTACGCCGGGGCTATGGGGCTAGAC > 7:230443/1‑149 GTCTTGCTCCAAGATCGAAGGTGAGCCTTGAGTCTAGCCCCATAGCCCCGGCGTACCGGTAGCACCTGACCACCTGATGCAAATGCAGGATTGATAGGCGATCAAGCCGATAAAAAAAGCGCCCCAAGCGGAGCGCCAGAAAATCCACCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/4125833‑4125982‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tccacctTGGCAACCTTGTTGCTCCTTTGGTTTAGGTGGATTTTCTGGCGCTCCGCTTGGGGCGCTTTTTTTATCGGCTTGATCGCCTATCAATCCTGCATTTGCATCAGGTGGTCAGGTGCTACCGGTACGCCGGGGCTATGGGGCTAGAC < NC_002947/4126008‑4125864 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |