New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4125982	35 (0.710)	4 (0.090)	4/242	NT	9.4%	intergenic (‑151/+35)	PP_3629/opdT‑II	hypothetical protein/tyrosine‑specific outer membrane porin D
	?	NC_002947	= 4126008	44 (0.940)					intergenic (‑177/+9)	PP_3629/opdT‑II	hypothetical protein/tyrosine‑specific outer membrane porin D

CTCCAAGATCGAAGGTGAGCCTTGAGTCTAGCCCCATAGCCCCGGCGTACCGGTAGCACCTGACCACCTGATGCAAATGCAGGATTGATAGGCGATCAAGCCGATAAAAAAAGCGCCCCAAGCGGAGCGCCAGAAAATCCACCTAAACCAAAGGAGCAACAAGGTTGCCAAGGTGGAATCACAGAATCGACAACGGGTACTCCACGATCATCCGCACTTCGTCCAGATCCGACTCGAACGCCGTGGCCCGGGTGGTGGCCTGGCGAACCCGCAACGACAGGTCCTTGGC  >  NC_002947/4125839‑4126127                                                                                                                                                |                                                                                                                                                  cTCCAAGATCGAAGGTGAGCCTTGAGTCTAGCCCCATAGCCCCGGCGTACCGGTAGCACCTGACCACCTGATGCAAATGCAGGATTGATAGGCGATCAAGCCGATAAAAAAAGCGCCCCAAGCGGAGCGCCAGAAAATCCACCTAAAc                                                                                                                                               <  5:193216/148‑1 (MQ=255)    cAAGATCGAAGGTGAGCCTTGAGTCTAGCCCCATAGCCCCGGCGTACCGGTAGCACCTGACCACCTGATGCAAATGCAGGATTGATAGGCGATCAAGCCGATAAAAAAAGCGCCCCAAGCGGAGCGCCAGAAAATCCACCTAAACCa                                                                                                                                             >  2:7206/1‑147 (MQ=255)    cAAGATCGAAGGTGAGCCTTGAGTCTAGCCCCATAGCCCCGGCGTACCGGTAGCACCTGACCACCTGATGCAAATGCAGGATTGATAGGCGATCAAGCCGATAAAAAAAGCGCCCCAAGAGGAGCGCCAGAAAATCCACCTAAACCa                                                                                                                                             >  4:42371/1‑147 (MQ=255)       gATCGAAGGTGAGCCTTGAGTCTAGCCCCATAGCCCCGGCGTACCGGTAGCACCTGACCACCTGATGCAAATGCAGGATTTATAGGCGATCAAGCCGATAAAAAAAGCGCCCCAAGCGGAGCGCCAGAAAATCCACCTAAACCAAAGGa                                                                                                                                        <  5:69778/149‑1 (MQ=255)         tCGAAGGTGAGCCTTGAGTCTAGCCCCATAGCCCCGGCGTACCGGTAGCACCTGACCACCTGATTCAAATTCAGGATTGATAGGCGATTAAGCCGATAAAAAAAGCTCCCCAAGCGGAGCGCCAGAAAATCCACCTAAACCAAATGAGc                                                                                                                                      <  5:222901/149‑1 (MQ=255)               gTGAGCCTTGAGTCTAGCCCCATAGCCCCGGCGTACCGGTAGCACCTGACCACCTGATGCAAATGCAGGATTGATAGGCGATCAAGCCGATAAAAAAAGCGCCCCAAGCGGAGCGCCAGAAAATCCACCTAAACCAAAGGAGCAACAAg                                                                                                                                <  4:282189/149‑1 (MQ=255)                          gTCTAGCCCCATAGCCCCGGCGTACCTGTAGCACCTGACCACCTGATGCAAATGCAGGATTGATAGGCGATCAAGCCGATAAAAAAAGCGCCCCAAGCGGAGCGCCAGAAAATCCACCTAAACCAAAGGAGCAACAAGGTTGCCAaggt                                                                                                                     >  7:230443‑M2/1‑145 (MQ=255)                            cTAGCCCCATAGCCCCGGCGTACCGGTAGCACCTGACCACCTGATGCAAATGCAGGATTGATAGGCGATCAAGCCGATAAAAAAAGCGCCCCAAGCGGAGCGCCAGAAAATCCACCTAAACCAAAGGAGCAACAAGGTTGCCAaggtg                                                                                                                    >  3:10868‑M2/1‑143 (MQ=255)                             tAGCCCCATAGCCCCGGCGTACCGGTAGCACCTGACCACCTGATGCAAATGCAGGATTGATAGGCGATCAAGCCGATAAAAAAAGCGCCCCAAGCGGAGCGCCAGAAAATCCACCTtggcaaccttgttgctcctttggtttaggt                                                                                                                     <  1:308427‑M1/146‑31 (MQ=255)                             tAGCCCCATAGCCCCGGCGTACCGGTAGCACCTGACCACCTGATGCAAATGCAGGATTGATAGGCGATCAAGCCGATAAAAAAAGCGCCCCAAGCGGAGCGCCAGAAAATCCACCTtggcaaccttgttgctcctttggtttaggt                                                                                                                     >  2:308427‑M1/1‑116 (MQ=255)                                   cATAGCCCCGGCGTACCGGTAGCACCTGACCACCTGATGCAAATGCAGGATTGATAGGCGATCAAGCCGATAAAAAAAGCGCCCCAAGCGGAGCGCCAGAAAATCCACCTAAACCAAAGGAGCAACAAGGTTGCCAAGGTGGAATcaca                                                                                                            <  4:154790/149‑1 (MQ=255)                                   cATAGCCCCGGCGTACCGGTAGCACCTGACCACCTGATGCAAATGCAGGATTGATAGGCGATCAAGCCGATAAAAAAAGCGCCCCAAGCGGAGCGCCAGAAAATCCACCTAAACCAAAGGAGCAACAAGGTTGCCAAGGTGGAATca                                                                                                              >  6:9777/1‑147 (MQ=255)                                   cATAGCCCCGGCGTACCGGTAGCACCTGACCACCTGATGCAAATGCAGGATTGATAGGCGATCAAGCCGATAAAAAAAGCGCCCCAAGCGGAGCGCCAGAAAATCCACCTAAACCAAAGGAGCAACAAGGTTGCCAAGGTGGAATca                                                                                                              >  6:211115/1‑147 (MQ=255)                                    aTAGCCCCGGCGTACCGGTAGCACCTGACCACCTGATGCAAATGCAGGATTGATAGGCGATCAAGCCGATAAAAAAAGCGCCCCAAGCGGAGCGCCAGAAAATCCACCTAAACCAAAGGAGCAACAAGGTTGCCAAGGTGGAATCACAg                                                                                                           <  7:125832/149‑1 (MQ=255)                                          ccGGCGTACCGGTAGCACCTGACCACCTGATGCAAATGCAGGATTGATAGGCGATCAAGCCGATAAAAAAAGCGCCCCAAGCGGAGCGCCAGAAAATCCACCTAAACCAAAGGAGCAACAAGGTTGCCAAGGTGGAATCACAGAATc                                                                                                       <  4:87203/147‑1 (MQ=255)                                          ccGGCGTACCGGTAGCACCTGACCACCTGATGCAAATGCAGGATTGATAGGCGATCAAGCCGATAAAAAAAGCGCCCCAAGCGGAGCGCCAGAAAATCCACCTAAACCAAAGGAGCAACAAGGTTGCCAAGGTGGAATCACAGAATc                                                                                                       >  3:87203/1‑147 (MQ=255)                                               gTACCGGTAGCACCTGACCACCTGATGCAAATGCAGGATTGATAGGCGATCAAGCCGATAAAAAAAGCGCCCCAAGCGGAGCGCCAGAAAATCCACCTAAACCAAAGGAGCAACAAGGTTGCCAAGGTGGAATCACAGAATCGACAACg                                                                                                >  6:62264/1‑149 (MQ=255)                                                       aGCACCTGACCACCTGATGCAAATGCAGGATTGATAGGCGATCAAGCCGATAAAAAAAGCGCCCCAAGCGGAGCGCCAGAAAATGCACCTtggcaaccttgttgctcctttggtttaggtggattttctg                                                                                                           <  1:225824‑M1/130‑41 (MQ=255)                                                       aGCACCTGACCACCTGATGCAAATGCAGGATTGATAGGCGATCAAGCCGATAAAAAAAGCGCCCCAAGCGGAGCGCCAGAAAATCCACCTtggcaaccttgttgctcctttggtttaggtggattttctg                                                                                                           >  2:225824‑M1/1‑90 (MQ=255)                                                        gCACCTGACCACCTGATGCAAATGCAGGATTGATAGGCGATCAAGCCGATAAAAAAAGCGCCCCAAGCGGAGCGCCAGAAAATCCACCTAAACCAAAGGAGCAACAAGGTTGCCAAGGTGGAATCACAGAATCGACAACGGGTACTCCa                                                                                       <  3:42371/149‑1 (MQ=255)                                                        gCACCTGACCACCTGATGCAAATGCAGGATTGATAGGCGATCAAGCCGATAAAAAAAGCGCCCCAAGCGGAGCGCCAGAAAATCCACCTAAACCAAAGGAGCAACAAGGTTGCCAAGGTGGAATCACAGAATCGACAACGGGTACTCCa                                                                                       <  1:7206/149‑1 (MQ=255)                                                           ccTGACCACCTGATGCAAATGCAGGATTGATAGGCGATCAAGCCGATAAAAAAAGCGCCCCAAGCGGAGCGCCAGAAAATCCACCTAAACCAAAGGAGCAACAAGGTTGCCAAGGTGGAATCACAGAATCGACAACGGGTACTCCACGa                                                                                    <  5:9777/149‑1 (MQ=255)                                                           ccTGACCACCTGATGCAAATGCAGGATTGATAGGCGATCAAGCCGATAAAAAAAGCGCCCCAAGCGGAGCGCCAGAAAATCCACCTAAACCAAAGGAGCAACAAGGTTGCCAAGGTGGAATCACAGAAGCGCCAACGGGTACTCCACgc                                                                                    >  4:80271/1‑148 (MQ=255)                                                            cTGACCACCTGATGCAAATGCAGGATTGATAGGCGATCAAGCCGATAAAAAAAGCGCCCCAAGCGGAGCGCCAGAAAATCCACCTAAACCAAAGGAGCAACAAGGTTGCCAAGGTGGAATCACAGAATCGACAACGGGTACTCCACGa                                                                                    >  7:79408/1‑148 (MQ=255)                                                               accaccTGATGCAAATGCAGGATTGATAGGCGATCAAGCCGATAAAAAAAGCGCCCCAAGCGGAGCGCCAGAAAATCCACCTAAACCAAAGGAGCAACAAGGTTGCCAAGGTGGAATCACAGAATCGACAACGGGTACTCCACGatcat                                                                                >  8:108324/1‑149 (MQ=255)                                                                       aTGCAAATGCAGGATTGATAGGCGATCAAGCCGATAAAAAAAGCGCCCCAAGCGGAGCGCCAGAAAATCCACCTAAACCAAAGGAGCAACAAGGTTGCCAAGGTGGAATCACAGAATCGACAACGGGTACTCCACGATCATCCGCACt                                                                         <  5:211115/148‑1 (MQ=255)                                                                            aaTGCAGGATTGATAGGCGATCAAGCCGATAAAAAAAGCGCCCCAAGCGGAGCGCCAGAAAATCCACCTAAACCAAAGGAGCAACAAGGTTGCCAAGGTGGAATcaca                                                                                                            <  2:221274/108‑1 (MQ=255)                                                                            aaTGCAGGATTGATAGGCGATCAAGCCGATAAAAAAAGCGCCCCAAGCGGAGCGCCAGAAAATCCACCTAAACCAAAGGAGCAACAAGGTTGCCAAGGTGGAATcaca                                                                                                            >  1:221274/1‑108 (MQ=255)                                                                                          aGGCGATCAAGCCGATAAAAAAAGCGCCCCAAGCGGAGCGCCAGAAAATCCACCTAAACCAAAGGAGCAACAAGGTTGCCAAGGTGGAATCACAGAATCGACAACGGGTACTCCACGATCATCCGCACTTCGTCCAGATCCGACTCGaa                                                     >  1:199610/1‑149 (MQ=255)                                                                                                            aaaaaGCGCCCCAAGCGGAGCGCCAGAAAATCCACCTAAACCAAAGGAGCAACAAGGTTGCCAAGGTGGAATCACAGAATCGACAACGGGTACTCCACGATCATCCGCACTTCGTCCAGATCCGACTCGAACGCCGTGGCCCGggtggt                                   >  6:152915/1‑149 (MQ=255)                                                                                                                    ccccAAGCGGAGCGCCAGAAAATCCACCTAAACCAAAGGAGCAACAAGGTTGCCAAGGTGGAATCACAGAATCGACAACGGGTACTCCACGATCATCCGCACTTCGTCCAGATCCGACTCGAACGCCGTGGCCCGGGTGGTGGCCTGGc                           <  8:79408/149‑1 (MQ=255)                                                                                                                     cccAAGCGGAGCGCCAGAAAATCCACCTAAACCAAAGGAGCAACAAGGTTGCCAAGGTGGAATCACAGAATCGACAACGGGTACTCCACGATCATCCGCACTTCGTCCAGATCCGACTCGAACGCCGTGGCCCGGGTGGTGGCCTGGc                           >  3:101266/1‑148 (MQ=255)                                                                                                                      ccAAGCGGAGCGCCAGAAAATCCACCTAAACCAAAGGAGCAACAAGGTTGCCAAGGTGGAATCACAGAATCGACAACGGGTACTCCACGATCATCCGCACTTCGTCCAGATCCGACTCGAACGCCGTGGCCCggg                                       >  4:93342/1‑135 (MQ=255)                                                                                                                      ccAAGCGGAGCGCCAGAAAATCCACCTAAACCAAAGGAGCAACAAGGTTGCCAAGGTGGAATCACAGAATCGACAACGGGTACTCCACGATCATCCGCACTTCGTCCAGATCCGACTCGAACGCCGTGGCCCggg                                       <  3:93342/135‑1 (MQ=255)                                                                                                                       cAAGCGGAGCGCCAGAAAATCCACCTAAACCAAAGGAGCAACAAGGTTGCCAAGGTGGAATCACAGAATCGACAACGGGTACTCCACGATCATCCGCACTTCGTCCAGATCCGACTCGAACGCCGTGGCCCGGGTGGTGGCCTGGCGaa                        <  4:114963/149‑1 (MQ=255)                                                                                                                        gcttggggcgcCAGAAAATCCACCTAAACCAAAGGAGCAACAAGGTTGCCAAGGTGGAATCACAGAATCGACAACGGGTACTCCACGATCATCCGCACTTCGTCCAGATCCGACTCGAACGCCGTGGCCCGGGTGGTGGCCTGGCGAAc                       <  3:256731/142‑1 (MQ=255)                                                                                                                             gAGCGCCAGAAAATCCACCTAAACCAAAGGAGCAACAAGGTTGCCAAGGTGGAATCACAGAATCGACAACGGGTACTCCACGATCATCCGCACTTCGTCCAGATCCGACTCGAACGCCGTGGCCCGggtg                                     >  7:234496/1‑130 (MQ=255)                                                                                                                             gAGCGCCAGAAAATCCACCTAAACCAAAGGAGCAACAAGGTTGCCAAGGTGGAATCACAGAATCGACAACGGGTACTCCACGATCATCCGCACTTCGTCCAGATCCGACTCGAACGCCGTGGCCCGggtg                                     <  8:234496/130‑1 (MQ=255)                                                                                                                                  ccAGAAAATCCACCTAAACCAAAGGAGCAACAAGGTTGCCAAGGTGGAATCACAGAATCGACAACGGGTACTCCACGATCATCCGCACTTCGTCCAGATCCGACTCGAACGCCGTGGCCCGGGTGGTGGCCTGGCGAACCCGCAACGa              >  3:24262/1‑148 (MQ=255)                                                                                                                                  ccAGAAAATCCACCTAAACCAAAGGAGCAACAAGGTTGCCAAGGTGGAATCACAGAATCGACAACGGGTACTCCACGATCATCCGCACTTCGTCCAGATCCGACTCGAACGCCGTGGCCCGGGTGGTGGCCTGGCGAACCCGCAACGAc             <  3:80271/149‑1 (MQ=255)                                                                                                                                   cAGAAAATCCACCTAAACCAAAGGAGCAACAAGGTTGCCAaggtggattttctggcgctccgcttggggcgctttttttatcggcttgatcgcctatcaatcctgcatttgcatcaggtggtcaggtgct                               >  2:225824‑M2/1‑40 (MQ=255)                                                                                                                                   cAGAAAATCCACCTAAACCAAAGGAGCAACAAGGTTGCCAaggtgcattttctggcgctccgcttggggcgctttttttatcggcttgatcgcctatcaatcctgcatttgcatcaggtggtcaggtgct                               <  1:225824‑M2/130‑91 (MQ=255)                                                                                                                                   cAGAAAATCCACCTAAACCAAAGGAGCAACAAGGTTGCCAAGGTGGAATCACAGAATCGACAACGGGTACTCCACGATCATCCGCACTTCGTCCAGATCCGACTCGAACGCCGTGGCCCGGGTGGTGGCCTGGCGAACCCGCAACGa              >  1:166925/1‑147 (MQ=255)                                                                                                                                       aaaTCCACCTAAACCAAAGGAGCAACAAGGTTGCCAAGGTGGAATCACAGAATCGACAACGGGTACTCCACGATCATCCGCACTTCGTCCAGATCCGACTCGAACGCCGTGGCCCGGGTGGTGGCCTGGCGAACCCGCAACGACAGGt         <  4:24262/148‑1 (MQ=255)                                                                                                                                            cACCTtggcaaccttgttgctcctttggtttaggtggattttctggcgctccgcttggggcgctttttttatcggcttgatcgcctatcaatcctgcatttgcatcaggtggtcaggtgctaccggtacgccggggctatggggctag    >  3:10868‑M1/1‑5 (MQ=255)                                                                                                                                             aCCTtggcaaccttgttgctcctttggtttaggtggattttctggcgctccgcttggggcgctttttttatcggcttgatcgcctatcaatcctgcatttgcatcaggtggtcaggtgctacaggtacgccggggctatggggctagac  >  7:230443‑M1/1‑4 (MQ=255)                                                                                                                                             aCCTAAACCAAAGGAGCAACAAGGTTGCCAaggtggattttctggcgctccgcttggggcgctttttttatcggcttgatcgcctatcaatcctgcatttgcatcaggtggtcaggtgctaccggtacgccggggctatggggcta     >  2:308427‑M2/1‑30 (MQ=255)                                                                                                                                             aCCTAAACCAAAGGAGCAACAAGGTTGCCAaggtggattttctggcgctccgcttggggcgctttttttatcggcttgatcgcctatcaatcctgcatttgcatcaggtggtcaggtgctaccggtacgccggggctatggggcta     <  1:308427‑M2/146‑117 (MQ=255)                                                                                                                                             aCCTAAACCAAAGGAGCAACAAGGTTGCCAAGGTGGAATCACAGAATCGACAACGGGTACTCCACGATCATCCGCACTTCGTCCAGATCCGACTCGAACGACGATGCCCGGGTGGTGGCCTGGCGAACCCGCAAAGACAGGTCCTTGGc  >  8:250586/1‑149 (MQ=255)                                                                                                                                                |                                                                                                                                                  CTCCAAGATCGAAGGTGAGCCTTGAGTCTAGCCCCATAGCCCCGGCGTACCGGTAGCACCTGACCACCTGATGCAAATGCAGGATTGATAGGCGATCAAGCCGATAAAAAAAGCGCCCCAAGCGGAGCGCCAGAAAATCCACCTAAACCAAAGGAGCAACAAGGTTGCCAAGGTGGAATCACAGAATCGACAACGGGTACTCCACGATCATCCGCACTTCGTCCAGATCCGACTCGAACGCCGTGGCCCGGGTGGTGGCCTGGCGAACCCGCAACGACAGGTCCTTGGC  >  NC_002947/4125839‑4126127

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.