New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4140139 =	58 (1.170)	5 (0.110)	3/240	NT	8.2%	intergenic (+31/‑234)	PP_3644/PP_5609	monooxygenase subunit/hypothetical protein
	?	NC_002947	4140178 =	57 (1.230)					intergenic (+70/‑195)	PP_3644/PP_5609	monooxygenase subunit/hypothetical protein

CTCTTGCCGGGGGACGAAAGGTGGCCTGATGCCTTGATTTCTCTGTTGTCTGTACTGGCCTCTTCGCGGGCTTGCCCGCTCCCACAGGGACTGCACAGGTTTCAAAAAAAAGCCCGCTCACGCAGGCCGAAGGGGCCCACGGGAGCGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4140288‑4140139 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gagcgggcTTTTTTTTGAAACCTGTGCAGTCCCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCAGTACAGACAACAGAGAAATCAAGGCATCAGGCCACCTTTCGTCCCCCGGCAAGAGAAATTTCCTGACACCTCTTGCACAACAAATATTATG  >  NC_002947/4140178‑4140324                                                                                                                                                                                                                                                                                                           CTCTTGCCGGGGGACGAAAGGTGGCCTGATGCCTTGATTTCTCTGTTGTCTGTACTGGCCTCTTCGCGGGCTTGCCCGCTCCCACAGGGACTGCACAGGTTTCAAAAAAAAGCCCGCTCACGCAGGCCGAAGGGGCCCACGGGAGCGG                                                                                                                                                       <  4:211738/148‑1                                  TTGATTTCTCTGTTGTCTGTACTGGCCTCTTCGCGGGCTTGCCCGCTCCCACAGGGACTGCACAGGTTTCAAAAAAAAGCCCGCTCACGCAGGCCGAAGGGGCCCACGGGAGCGG                                                                                                                                                       >  7:258580/1‑115                                  TTGATTTCTCTGTTGTCTGTACTGGCCTCTTCGCGGGCTTGCCCGCTCCCACAGGGACTGCACAGGTTTCAAAAAAAAGCCCGCTCACGCAGGCCGAAGGGGCCCACGGGAGCGG                                                                                                                                                       <  8:258580/115‑1                                                                                                                 CCCGCTCACGCAGGCCGAAGGGGCCCACGGGAGCGGGCTTTTTTTTGAAACCTGTGCAGTCCCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCAGTACAGACAACAGAGAAATCAAGGCATCAGGCCACCTTTCGTCCCCCGGCAA                                         >  7:42316/1‑146                                                                                                                  CCGCTCACGCAGGCCGAAGGGGCCCACGGGAGCGGGCTTTTTTTTGAAACCTGTGCAGTCCCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCAGTACAGACAACAGAGAAATCAAGGCATCAGGCCACCTATCGTCCCCCGGCAAGAG                                      >  4:158541/1‑148                                                                                                                  CCGCTCACGCAGGCCGAAGGGGCCCACGGGAGCGGGCTTTTTTTTGAAACCTGTGCAGTCCCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCAGTACAGACAACAGA                                                                               <  7:97970/107‑1                                                                                                                  CCGCTCACGCAGGCCGAAGGGGCCCACGGGAGCGGGCTTTTTTTTGAAACCTGTGCAGTCCCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCAGTACAGACAACAGA                                                                               >  8:97970/1‑107                                                                                                                  CCGCTCACGCAGGCCGAAGGGGCCCACGGGAGCGGGCTTTTTTTTGAAACCTGTGCAGTCACTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCAGTACAGACAACAGAGAAATCAAGGCATCAGGCCACCTTTCGTCCCCCGGCAAGAG                                      >  8:188829/1‑148                                                                                                                                                    GGCTTTTTTTTGAAACCTGTGCAGTCCCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCAGTACAGACAACAGAGAAATCAAGGCATCAGGCCACCTTTCGTCCCCCGGCAAGAGAAATTTCCTGACACCTCTTGCACAACAAATATTAT   <  8:52131/149‑1                                                                                                                                                     GCTTTTTTTTGAAACCTGTGCAGTCCCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCAGTACAGACAACAGAGAAATCAAGGCATCAGGCCACCTTTCGTCCCCCGGCAAGAGAAATTTCCTGACACCTCTTGCACAACAAATATTATG  <  6:318597/149‑1                                                                                                                                                                                                                                                                                                           CTCTTGCCGGGGGACGAAAGGTGGCCTGATGCCTTGATTTCTCTGTTGTCTGTACTGGCCTCTTCGCGGGCTTGCCCGCTCCCACAGGGACTGCACAGGTTTCAAAAAAAAGCCCGCTCACGCAGGCCGAAGGGGCCCACGGGAGCGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4140288‑4140139 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gagcgggcTTTTTTTTGAAACCTGTGCAGTCCCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCAGTACAGACAACAGAGAAATCAAGGCATCAGGCCACCTTTCGTCCCCCGGCAAGAGAAATTTCCTGACACCTCTTGCACAACAAATATTATG  >  NC_002947/4140178‑4140324

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.