| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 4535677 | 48 (0.970) | 4 (0.090) | 4/240 | NT | 7.7% | intergenic (+204/‑611) | PP_4022/PP_4024 | hypothetical protein/transposase |
| ? | NC_002947 | = 4535712 | 51 (1.100) | intergenic (+239/‑576) | PP_4022/PP_4024 | hypothetical protein/transposase | |||||
CCATAGCCGCTAACTGTAGCGTTTGTGCTGCCGACCAACTGCCTGAAGCCTCCCATGCCCTTCGAACTCACCGTAGAACCCCTTACCCTCCTCATCCTGGCGCTGGTCGCCTTCGTCGCTGGATTCATCGACGCCATCGCCGGTGGCGGCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/4535525‑4535677‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcggcggcATGCCGGCAGTGAGCAGGGCCGGAGTGGTGAGCAGGCCGCCGCCACCGGCGATGGCGTCGATGAATCCAGCGACGAAGGCGACCAGCGCCAGGATGAGGAGGGTAAGGGGTTCTACGGTGAGTTCGAAGGGCATGGGAGGCTTCAG < NC_002947/4535712‑4535567 CCATAGCCGCTAACTGTAGCGTTTGTGCTGCCGACCAACTGCCTGAAGCCTCCCATGCCCTTCGAACTCACCGTAGAACCCCTTACCCTCCTCATCCTGGCGCTGGTCGCCTTCGTCGCTGGATTCATCGACGCCATCGCCGGTGGCG < 2:301730/148‑1CCATAGCCGCTAACTGTAGCGTTTGTGCTGCCGACCAACTGCCTGAAGCCTCCCATGCCCTTCGAACTCACCGTAGAACCCCTTACCCTCCTCATCCTGGCGCTGGTCGCCTTCGTCGCTGGATTCAGCGACGCCATCGCCGGTGGCGG > 8:119800/1‑149 ATACCCGCTATCTGTAGCGGTTGTGCTGCCGAGCAACTGCCTGAAGCCTCCCATGCCCTTCGAACTCACCGTAGAACCCCTTACCCTCCTCATCCTGGCGCTGGTCGCCTTCGTCGCTGGATTCATCGACGCCATCGCCGGTGGCGGCG < 6:96007/149‑1 GCCGCTAACTGTAGCGTTTGTGCTGCCGACCAACTGCCTGAAGCCTCCCATGCCCTTCGAACTCACCGTAGAACCCCTTACCCTCCTCATCCTGGCGCTGGTCGCCTTCGTCGCTGGATTCATCGACGCCATCGCCGGTGGCGGCGGC < 3:224974/148‑1 GCCGCTAACTGTAGCGTTTGTGCTGCCGACCAACTGCCTGAAGCCTCCCATGCCCTTCGAACTCACCGTAGAACCCCTTACCCTCCTCATCCTGGCGCTGGTCGCCTTCGTCGCTGGATTCATCGACGCCACCGGCGATGGCGTCGat < 3:218441/148‑3 GAAGCCTCCCATGCCCTTCGAACTCACCGTAGAACCCCTTACCCTCCTCATCCTGGCGCTGGTCGCCTTCGTCGCTGGATTCATCGACGCCATCGCCGGTGGCGGCGG > 2:82904/1‑108 GAAGCCTCCCATGCCCTTCGAACTCACCGTAGAACCCCTTACCCTCCTCATCCTGCCGCTGGTCGCCTTCGTCGCTGGATTCATCGACGCCATCGCCGGTGGCGGCGG < 1:82904/108‑1 ctatcTGCCCTTCGATCTCAGCGTAGATCCCCTTAGCCTCCTCATGCTGGCGCTGGTCGCCTTCGTCGCTGGATTCATCGACGCCATCGCCGGTGGCGGCGGCATGCCGGCAGTGAGCAGGGCCGGAGTGGTGAGCAGGCCGCCGCCAC < 2:53169/144‑1 CCCTTCGAACTCACCGTAGAACCCCTTACCCTCCTCATCCTGGCGCTGGTCGCCTTCGTCGCTGGATTCATCGACGCCATCGCCCGTGGCGGCGGCATGCCGGCAGTGAGCAGGGCCGGAGTGGTGAGCAGGCCGCCGCCACCagatcg > 1:53169/1‑143 CCTCATCCTGGCGCTGGTCGCCTTCGTCGCTGGATTCATCGACGCCATCGCCGGTGGCGGCGGCATGCCGGCAGTGAGCAGGGCCGGAGTGGTGAGCAGGCCGCCG > 1:130246/1‑106 CCTCATCCTGGCGCTGGTCGCCTTCGTCGCTGGATTCATCGACGCCATCGCCGGTGGCGGCGGCATGCCGGCAGTGAGCAGGGCCGGAGTGGTGAGCAGGCCGCCG < 2:130246/106‑1 GGCGGCATGCCGGCAGTGAGCAGGGCCGGAGTGGTGAGCAGGCCGCCGCCACCGGCGATGGCGTCGATGAATCCAGCGACGAAGGCGACCAGCGCCAGGATGAGGAGGGTAAGGGGTTCTACGGTGAGTTCGAAGGGCATGGGAGGCTT < 8:177101/149‑1 CGGCATGCCGGCAGTGAGCAGGGCCGGAGTGGTGAGCAGGCCGCCGCCACCGGCGATGGCGTCGATGAATCCAGCGACGAAGGCGACCAGCGCCAGGATGAGGAGGGTAAGGTGTTCTACGGTGAGTTCGAAGGGCATGGGGGGCTTCA < 1:52586/149‑1 CGGCATGCCGGCAGTGAGCAGGGCCGGAGTGGTGAGCAGGCCGCCGCCACCGGCGATGGCGTCGATGAATCCAGCGACGAAGGCGACCAGCGCCAGGATGAGGAGGGTAAGGGGTTCTACGGTGAGTTCGAAGGGCATGGGAGGCTTCA < 3:88476/149‑1 GGCATGCGGGCAGTGAGCAGGGCCGGAGTGGTGAGCAGGCCGCCGCCACCGGCGATGGCGTCGATGAATCCAGCGACGAAGGCGACCAGCGCCAGGATGAGGAGGGTATGGGGTTCTACGGTGAGTTCGAAGGGCATGGGAGGCTTCAG < 4:265056/149‑1 CCATAGCCGCTAACTGTAGCGTTTGTGCTGCCGACCAACTGCCTGAAGCCTCCCATGCCCTTCGAACTCACCGTAGAACCCCTTACCCTCCTCATCCTGGCGCTGGTCGCCTTCGTCGCTGGATTCATCGACGCCATCGCCGGTGGCGGCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/4535525‑4535677‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcggcggcATGCCGGCAGTGAGCAGGGCCGGAGTGGTGAGCAGGCCGCCGCCACCGGCGATGGCGTCGATGAATCCAGCGACGAAGGCGACCAGCGCCAGGATGAGGAGGGTAAGGGGTTCTACGGTGAGTTCGAAGGGCATGGGAGGCTTCAG < NC_002947/4535712‑4535567 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |