New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4569586	49 (0.990)	3 (0.060)	3/244	NT	5.7%	coding (1516/2070 nt)	malQ	4‑alpha‑glucanotransferase
	?	NC_002947	= 4569622	52 (1.110)					coding (1552/2070 nt)	malQ	4‑alpha‑glucanotransferase

AGCGAGGGCGCCTACCTCGACTACCCGCTAGACGACCTGTTGCGCCTGCTGGCGCTGGAGTCGGTGCGTCACCAGGCGATCATCCTGGGTGAAGACCTGGGCACCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4569481‑4569586 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcaccgCTTTCTCGGCCAGCTTTTCGCGCAGGCTGTCGGGCACGGTGCCCAGGTCTTCACCCAGGATGATCGCCTGGTGACGCACCGACTCCAGCGCCAGCAGGCGCAACAGGTCGTCTAGCGGGTAGTCGAGGTAGGCGCCCTCGCTGGGTT  <  NC_002947/4569622‑4569476                                                                                                                                                                                                                                                               AGCGAGGGCGCCTACCTCGACTACCCGCTAGACGACCTGTTGCGCCTGCTGGCGCTGGAGTCGGTGCGTCACCAGGCGATCATCCTGGGTGAAGACCTGGGCACCGCTTTCTCGGCCAGCTTTTCGCGCAGGCTGTCGGGCACGGTGCC                                                                                                          <  8:240749/149‑1                                       GTTGCGCCTGCTGGCGCTGGAGTCGGTGCGTCACCAGGCGATCATCCTGGGTGAAGACCTGGGCACCGCTTTCTCGGCCAGCTTTTCGCGCAGGCTGTCGGGCACGGTGCCCAG                                                                                                       >  5:63184/1‑114                                       GTTGCGCCTGCTGGCGCTGGAGTCGGTGCGTCACCAGGCGATCATCCTGGGTGAAGACCTGGGCACCGCTTTCTCGGCCAGCTTTTCGCGCAGGCTGTCGGGCACGGTGCCCAG                                                                                                       <  6:63184/114‑1                                                                                                     GCACCGCTTTCTCGGCCAGCTTTTCGCGCAGGCTGTCGGGCACGGTGCCCAGGTCTTCACCCAGGATGATCGCCTGGTGACGCACCGACTCCAGCGCCAGCAGGCGCAACAGGTCGTCTAGCGGGTAGTCGAGGTAGGCGCCCTCGCTG      <  4:231972/149‑1                                                                                                        CCGCTTTCTCGGCCAGCTTTTCGCGCAGGCTGTCGGGCACGGTGCCCAGGTCTTCACCCAGGATGATCGCCTGGTGACGCACCGACTCCAGCGCCAGCAGGCGCAACAGGTCGTCTAGCGGGTAGTCGAGGTAGGCGCCCTCGCTGGGT   <  2:128676/149‑1                                                                                                         CGCTTTCTCGGCCAGCTTTTCGCGCAGGCTGTCGGGCACGGTGCCCAGGTCTTCACCCAGGATGATCGCCTGGTGACGCACCGACTCCAGCGCCAGCAGGCGCAACAGGTCGTCTAGCGGGTAGTCGAGGTAGGCGCCCTCGCTGGGTT  >  3:189665/1‑149                                                                                                                                                                                                                                                               AGCGAGGGCGCCTACCTCGACTACCCGCTAGACGACCTGTTGCGCCTGCTGGCGCTGGAGTCGGTGCGTCACCAGGCGATCATCCTGGGTGAAGACCTGGGCACCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4569481‑4569586 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcaccgCTTTCTCGGCCAGCTTTTCGCGCAGGCTGTCGGGCACGGTGCCCAGGTCTTCACCCAGGATGATCGCCTGGTGACGCACCGACTCCAGCGCCAGCAGGCGCAACAGGTCGTCTAGCGGGTAGTCGAGGTAGGCGCCCTCGCTGGGTT  <  NC_002947/4569622‑4569476

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.