| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 4961891 = | 49 (0.990) | 3 (0.060) | 3/246 | NT | 6.3% | coding (547/1356 nt) | atoC | two‑component system DNA‑binding transcriptional activator AtoC |
| ? | NC_002947 | 4961922 = | 42 (0.890) | coding (516/1356 nt) | atoC | two‑component system DNA‑binding transcriptional activator AtoC | |||||
AGCCGGCCAGTCGCCAGTTGCTGGAGCTGGCGGCCCGTGTGGCGCGCAGTGACTCGACCGTACTGATTTCCGGCGAGTCCGGTACTGGCAAGGAAGTGCTGGCGCGCTACATTCACCAGCAGTCGCCGCGTGCGGCGCAGCCCTTCGTGGCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4962043‑4961891‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcgaCTGCTGGTGAATGTAGCGCGCCAGCACTTCCTTGCCAGTACCGGACTCGCCGGAAATCAGTACGGTCGAGTCACTGCGCGCCACACGGGCCGCCAGCTCCAGCAACTGGCGACTGGCCGGCTCGCAGGCCACCGGCCCTTCTTCGCCG > NC_002947/4961922‑4962069 AGCCGGCCAGTCGCCAGTTGCTGGAGCTGGCGGCCCGTGTGGCGCGCAGTGACTCGACCGTACTGATTTCCGGCGAGTCCGGTGCTGGCAAGGAAGTGCTGGCGCGCTACATTCACCAGCAGTCGCCGCGTGCGGCGCAGCCCTTCGTG > 1:214043/1‑149AGCCGGCCAGTCGCCAGTTGCTGGAGCTGGCGGCCCGTGTGGCGCGCAGTGACTCGACCGTACTGATTTCCGGCGAGTCCGGTACTGGCAAGGAAGTGCTGGCGCGCTACATTCACCAGCAGTCGCCGCGTGCGGCGCAGCCCTTCGTG < 3:29755/149‑1AGCCGGCCAGTCGCCAGTTGCTGGAGCTGGCGGCCCGTGTGGCGCGCAGTGACTCGACCGTACTGATTTCCGGCGAGTCCGGTACTGGCAAGGAAGTGCTGGCGCGCTACATTCACCAGCAGTCGCCGCGTGCGGCGCAGCCCTTCGTG > 3:67452/1‑149AGCCGGCCAGTCGCCAGTTGCTGGAGCTGGCGGCCCGTGTGGCGCGCAGTGACTCGACCGTACTGATTTCCGGCGAGTCCGGTACTGGCAAGGAAGTGCTGGCGCGCTACATTCACCAGCAGTCGCCGCGTGCGGCGCAGCCCTTCGTG < 4:69734/149‑1 GCCGGCCAGTCGCCAGTTGCTGGAGCTGGCGGCCCGTGTGGCGCGCAGTGACTCGACCGTACTGATTTCCGGCGAGTCCGGTACTGGCAAGGAAGTGCTGGCGCGCTACATTCACCAGCAGTCGCCGCGTGCGGCGCAGCCCTTCGTGG < 4:235659/149‑1 GCCGGCCAGTCGCCAGTTGCTGGAGCTGGCGGCCCGTGTGGCGCGCAGTGACTCGACCGTACTGATTTCCGGCGAGTCCGGTACTGGCAAGGAAGTGCTGGCGCGCTACATTCACCAGCAGTCGCCGCGTGCGGCGCAGCCCTTCGTGG < 4:59073/149‑1 GGCCAGTCGCCAGTTGCTGGAGCTGGCGGCCCGTGTGGCGCGCAGTGACTCGACCGTACTGATTTCCGGCGAGTCCGGTACTGGCAAGGAAGTGCTGGCGCGCTACATTCACCAGCAGTCGCCGCGTGCGGCGCAGCCCTTCGTGGCGA < 6:99518/149‑1 GGCCAGTCGCCAGTTGCTGGAGCTGGCGGCCCGTGTGGCGCGCAGTGACTCGACCGTACTGATTTCCGGCGACTCCGGTACTGGCAAGGAAGTGCTGGCGCGCTACATTCACCAGCAGTCGCCGCGTGCGCCGCAGCCCTTCGTGGCGA > 7:92402/1‑149 TTCCGGCGAGTCCGGTACTGGCAAGGAAGTGCTGGCGCGCTACATTCACCAGCAGTCGCCGCGTGCGGCGCAGCCCTTCGTGG < 3:161254/83‑1 TTCCGGCGAGTCCGGTACTGGCAAGGAAGTGCTGGCGCGCTACATTCACCAGCAGTCGCCGCGTGCGGCGCAGCCCTTCGTGG > 4:161254/1‑83 CTACATTCACCAGCAGTCGCCGCGTGCGGCGCAGCCCTTCGTGGCGACTGCTGGTGAATGTAGCGCGCCAGCACTTCCTTGCCAGTACCGGACTCGCCGGAAATCAGTACGGTCGAGTCACTGCGCGCCACACGGGCCGCCAGCTCCAG > 4:25429/1‑149 CAGCAGTCGCCGCGTGCGGCGCAGCCCTTCGTGGCGACTGCTGGTGAATGTAGCGCGCCAGCACTTCCTTGCCAGTACCGGACTCGCCGGAAATCAGTACGGTCGAGTCACTGCGCGCCACACGGGCCGCCAGCTCCAGCAACTGGCGA < 7:2986/149‑1 CAGCAGTCGCCGCGTGCGGCGCAGCCCTTCGTGGCGACTGCTGGTGAATGTAGCGCGCCAGCACTTCCTTGCCAGTACCGGACTCGCCGGAAATCAGTACGGTCGAGTCACTGCGCGCCACACGGGCCGCCAGCTCCAGCAACTGGCGA > 8:2986/1‑149 CGACTGCTGGTGAATGTAGCGCGCCAGCACTTCCTTGCCAGTACCGGACTCGCCGGAAATCAGTACGGTCGAGTCACTGCGCGCCACACGGGCCGCCAGCTCCAGCAACTGGCGACTGGCCGGCTCGCAGGCCACCGGCCCTTCTTCGC < 4:295996/149‑1 GACTGCTGGTGAATGTAGCGCGCCAGCACTTCCTTGCCAGTACCGGACTCGCCGGAAATCAGTACGGTCGAGTCACTGCGCGCCACACGGGCCGCCAGCTCCAGCAACTGGCGACTGGCCGGCTCGCAGGCCACCGGCCCTTCTTCGCC > 4:297037/1‑149 ACTGCTGGTGAATGTAGCGCGCCAGCACTTCCTTGCCAGTACCGGACTCGCCGGAAATCAGTACGGGCGAGTCACTGCGCGCCACACGGGCCGCCAGCTCCAGCAACTGGCGACTGGCCGGCTCGCAGGCCACCGGCCCTTCTTCGCCG < 4:29755/149‑1 AGCCGGCCAGTCGCCAGTTGCTGGAGCTGGCGGCCCGTGTGGCGCGCAGTGACTCGACCGTACTGATTTCCGGCGAGTCCGGTACTGGCAAGGAAGTGCTGGCGCGCTACATTCACCAGCAGTCGCCGCGTGCGGCGCAGCCCTTCGTGGCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4962043‑4961891‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcgaCTGCTGGTGAATGTAGCGCGCCAGCACTTCCTTGCCAGTACCGGACTCGCCGGAAATCAGTACGGTCGAGTCACTGCGCGCCACACGGGCCGCCAGCTCCAGCAACTGGCGACTGGCCGGCTCGCAGGCCACCGGCCCTTCTTCGCCG > NC_002947/4961922‑4962069 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |