New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 5167753 = | 53 (1.070) | 4 (0.090) | 4/242 | NT | 7.8% | coding (127/3906 nt) | hrpA | ATP‑dependent helicase HrpA |
? | NC_002947 | 5167791 = | 45 (0.960) | coding (89/3906 nt) | hrpA | ATP‑dependent helicase HrpA |
ACCTGCATCACTAAAAAGCCCCATGACTGACCACGCCATCGACAAACTGCTGCAAAACCTCGACCACGCCATGATTGCCGACCGCCATTGCCTGCGCCGGCAACTGCACGAACTGCGCAAGCGCCCCGACGAGGCGAAGCTGGCGCAGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5167901‑5167753 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgcagtTCGTGCAGTTGCCGGCGCAGGCAATGGCGGTCGGCAATCATGGCGTGGTCGAGGTTTTGCAGCAGTTTGTCGATGGCGTGGTCAGTCATGGGGCTTTTTAGTGATGCAGGTGAGCCTGCTTTTTCATGATCGGCATTCGGAAAGT > NC_002947/5167791‑5167935 ACCTGCATCACTAAAAAGCCCCATGACTGACCACGCCATCGACAAACTGCTGCAAAACCTCGACCACGCCATGATTGCCGACCGCCATTGCCTGCGCCGGCAACTGCACGAACTGCGCAAGCGCCCCGACGAGGCGAAGCTGGCGCAGT < 8:223154/149‑1 ACGAACTGCGCAAGCGCCCCGACGAGGCGAAGCTGGCGCAGTTCGTGCAGTTGCCGGCGCAGGCAATGGCGGTCGGCAATCATGGCGTGGTCGAGGTTTTGCAGCAGTTTGTCGATGGCGTGGTCAGTCATGGGGCTTTTTAGTGATG > 4:23118/1‑148 GAACTGCGCAAGCGCCCCGACGAGGCGAAGCTGGCGCAGTTCGTGCAGTTGCCGGCGCAGGCAATGGCGGTCGGCAATCATGGCGTGGTCGAGGTTTTGCAGCAGTTTGTCGATGGCGTGGTCAGTCATGGGGCTTTTTA < 3:197158/140‑1 GAACTGCGCAAGCGCCCCGACGAGGCGAAGCTGGCGCAGTTCGTGCAGTTGCCGGCGCAGGCAATGGCGGTCGGCAATCATGGCGTGGTCGAGGTTTTGCAGCAGTTTGTCGATGGCGTGGTCAGTCATGGGGCTTTTTA > 4:197158/1‑140 CCGACGAGGCGAAGCTGGCGCAGTTCGTGCAGTTGCCGGCGCAGGCAATGGCGGTCGGCAATCATGGCGTGGTCGAGGTTTTGCAGCAGTTTGTCGATGGCGTGGTCAGTCATGGGGCTTTTTAGTGATGCAGGTGAGCCTGCTTTTTC < 3:23118/149‑1 GCGCAGTTCGTGCAGTTGCCGGCGCAGGCAATGGCGGTCGGCAATCATGGCGTGGTCGAGGTTTTGCAGCAGTTTGTCGATGGCGTGGTCAGTCATGGGGCTTTTTAGTGATGCAGGTGAGCCTGCTTTTTCATGATCGGCATTCGG < 7:223154/147‑1 CAGTTAGTGCAGGTGCCGGCGCATGCAATGGCGGTCGGCAATCATGGCGTGGTCGAGGTGTTGCAGCAGTTTGTCGATGGCGTGGTCAGTCATGGGGCTTTTTAGTGATGCAGGTGAGCCTGCTTTTTCATGATCGGCATTCGGAAAGT < 4:30244/149‑1 ACCTGCATCACTAAAAAGCCCCATGACTGACCACGCCATCGACAAACTGCTGCAAAACCTCGACCACGCCATGATTGCCGACCGCCATTGCCTGCGCCGGCAACTGCACGAACTGCGCAAGCGCCCCGACGAGGCGAAGCTGGCGCAGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5167901‑5167753 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgcagtTCGTGCAGTTGCCGGCGCAGGCAATGGCGGTCGGCAATCATGGCGTGGTCGAGGTTTTGCAGCAGTTTGTCGATGGCGTGGTCAGTCATGGGGCTTTTTAGTGATGCAGGTGAGCCTGCTTTTTCATGATCGGCATTCGGAAAGT > NC_002947/5167791‑5167935 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |