New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5220318	48 (0.970)	4 (0.130) +AGCTGGATGCACGGCACCGGCCATGCAACTTCGTCAAACACCTGTTGCCG	4/156	NT	12.0%	coding (416/519 nt)	moaB‑II	molybdenum cofactor biosynthesis protein B
	?	NC_002947	6037861 =	NA (NA)					intergenic (+63/+154)	argB/PP_5290	acetylglutamate kinase/transposase

TCCAGCTGCTCGGCCAGAATGCCTTCCCAGGCGGTGCGGCAGGCTCCGGTCGAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5220264‑5220318 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ATGTAGGAGATTCTATGGCCGGAG‑GCAAATTTTCAGTAAAAACGCCATCGGCCTCTCTCAGCAACCTCGAGGTACGAGTCAGCGTGCCAGAGAATTTCTCCCCAGCATTGGATACTGCCCGTCAGTTTGGGCGGGCTGCGTTGCA  >  NC_002947/6037861‑6038005                                                        ||||||||||||||||||||||||||||||||||||||||||||||||||                                                                                                                                                   TCCAGCTGCTCGGCCAGAATGCCTTCCCAGGCGGTGCGGCAGGCTCCGGTCGAGCAGCTGGATGCACGGCACCGGCCATGCAACTTCGTCAAACACCTGTTGCCGATGTAGGAGATTCTATGGCCGGAG‑GCAAATTTTCAGTAAAAACG                                                                                                       >  4:284/1‑149      CTGCTCGGCCAGAATGCCTTCCCAGGCGGTGCGGCAGGCTCCGGTCGAGCAGCTGGATGCACGGCACCGGCCATGCAACTTCGTCAAACACCTGTTGCCGATGTAGGAGATTCTATGGCCGGAG‑GCAAATTTTCAGTAAAAACGCCATC                                                                                                  >  5:71307/1‑149                 GAATGCCTTCCCAGGCGGTGCGGCAGGCTCCGGTCGAGCAGCTGGATGCACGGCACCGGCCATGCAACTTCGTCAAACACCTGTTGCCGATGTAGGAGATTCTATGGCCGGAG‑GCAAATTTTCAGTAAAAACGCCATCGGCCTCTCTCA                                                                                       <  3:284/149‑1                                CGGTGCGGCAGGCTCCGGTCGAGCAGCTGGATGCACGGCACCGGCCATGCAACTTCGTCAAACACCTGTTGCCGATGTAGGAGATTCTATGGCCGGAG‑GCAAATTTTCAGTAAAAACGCCATCGGCCTCTCTCAGCAACCTCGAGGTAC                                                                        <  6:71307/149‑1                                                    GAGCAGCTGGATGCACGGCACCGGCCATGCAACTTCGTCAAACACCTGTTGCCGATGTAGGAGATTCTATGGCCGGAG‑GCAAATTTTCAGTAAAAACGCCATCGGCCTCTCTCAGCAACCTCGAGGTACGAGTCAGCGTGCCAGAGAAT                                                    <  3:294445/149‑1                                                    GAGCAGCTGGATGCACGGCACCGGCCATGCAACTTCGTCAAACACCTGTTGCCGATGTAGGAGATTCTATGGCCGGAG‑GCAAATTTTCAGTAAAAACGCCATCGGCCTCTCTCAGCAACCTCGAGGTACGAGTCAGCGTGCCAGA                                                        >  6:54046/1‑145                                                    GAGCAGCTGGATGCACGGCACCGGCCATGCAACTTCGTCAAACACCTGTTGCCGATGTAGGAGATTCTATGGCCGGAG‑GCAAATTTTCAGTAAAAACGCCATCGGCCTCTCTCAGCAACCTCGAGGTACGAGTCAGCGTGCCAGA                                                        <  5:54046/145‑1                                                        AGCTGGATGCACGGCACCGGCCATGCAACTTCGTCAAACACCTGTTGCCGATGTAGGAGATTCTATGGCCGGAG‑GCAAATTTTCAGTAAAAACGCCATCGGCCTCTCTCAGCAACCTCGAGGTACGAGTCAGCGTGCCAGAGAATTTCT                                                >  2:133068/1‑149                                                        AGCTGGATGCACGGCACCGGCCATGCAACTTCGTCAAACACCTGTTGCCGATGTAGGAGATTCTATGGCCGGAG‑GCAAATTTTCAGTAAAAACGCCATCGGCCTCTCTCAGCAACCTCGAGGTACGAGTCAGCGTGCCAGAGAATTTCT                                                <  3:285104/149‑1                                                             GATGCACGGCACCGGCCATTCAACTTCTTCAAACACCTGTAGCCGATGTAGGAGATTCTATGGCAGGAG‑GCAAATTTTCAGTAAAAACGCCCTCGGCCTCTCTCAGCAACCTCGAGGTACGAGTCAGCGTGCCAGAGAATTTCTCCC                                             <  5:167176/147‑1                                                              ATGCACGGCACCGGCCATGCAACTTCGTCAAACACCTGTTGCCGATGTAGGAGATTCTATGGCCGGAG‑GCAAATTTTCAGTAAAAACGCCATCGGCCTCTCTCAGCAACCTCGAGGTACGAGTCAGCGTGCCAGAGAATTTCTCCC                                             <  8:101231/146‑1                                                              ATGCACGGCACCGGCCATGCAACTTCGTCAAACACCTGTTGCCGATGTAGGAGATTCTATGGCCGGAG‑GCAAATTTTCAGTAAAAACGCCATCGGCCTCTCTCAGCAACCTCGAGGTACGAGTCAGCGTGCCAGAGAATTTCTCCC                                             >  7:101231/1‑146                                                                  ACGGCACCGGCCATGCAACTTCGTCAAACACCTGTTGCCGATGTAGGAGATTCTATGGCCGGAG‑GCAAATTTTCAGTAAAAACGCCATCGGCCTCTCTCAGCAACCTCGAGGTACGAGTCAGCGTGCCAGAGAATTTCTCACCAGCATT                                      >  5:207763/1‑149                                                                   CGGCACCGGCCATGCAACTTCGTCAAACACCTGTTGCCGATGTAGGAGATTCTATGGCCGGAG‑GCAAATTTTCAGTAAAAACGCCATCGGCCTCTCTCAGCAACCTCGAGGTACGAGTCAGCGTGCCAGAGAATTTCTCCCCAGCATTG                                     <  4:34551/149‑1                                                                           GCCATGCAACTTCGTCAAACACCTGTTGCCGATGTAGGAGATTCTATGGCCGGAG‑GCAAATTTTCAGTAAAAACGCCATCGGCCTCTCTCAGCAACCTCGAGGTACGAGTCAGCGTGCCAGAGAATTTCTCCCCAGCATTGGATACTGC                             <  6:257822/149‑1                                                                                   ACTTCGTCAAACACCTGTTGCCGATGTAGGAGATTCTATGGCCGGAG‑GCAAATTTTCAGTAAAAACGCCATCGGCCTCTCTCAGCAACCTCGAGGTACGAGTCAGCGTGCCAGAGAATTTCTCCCCAGCATTGGATACTGCCCGTCAGT                     <  8:116640/149‑1                                                                                        GTCAAACACCTGTTGCCGATGTAGGAGATTCTATGGCCGGAG‑GCAAATTTTCAGTAAAAACGCCATCGGCCTCTCTCAGCAACCTCGAGGTACGAGTCAGCGTGCCAGAGAATTTCTCCCCAGCATTGGATACTGCCCGTCAGTTTGG                 <  6:78788/148‑1                                                                                         TCAAACACCTGTTGCCGATGTAGGAGATTCTATGGCCGGAG‑GCAAATTTTCAGTAAAAACGCCATCGGCCTCTCTCAGCAACCTCGAGGTACGAGTCAGCGTGCCAGAGAATTTCTCCCCAGCATTGGATACTGCCCGTCAGTTTGGGC               >  3:171667/1‑149                                                                                         TCAAACACCTGTTGCCGATGTAGGAGATTCTATGGCCGGAG‑GCAAATTTTCAGTAAAAACGCCATCGGCCTCTCTCAGCAACCTCGAGGTACGAGTCAGCGTGCCAGAGAATTTCTCCCCAGCATTGGATACTGCCCGTCAGTTTGGGC               <  1:283546/149‑1                                                                                           AAACACCTGTTGCCGATGTAGGAGATTCTATGGCCGGAG‑GCAAATTTTCAGTAAAAACGCCATCGGCCTCTCTCAGCAACCTCGAGGTACGAGTCAGCGTGCCAGAGAATTTCTCCCCAGCTTTGGATACTGCACGTCAGTTAGGGCGG             >  6:259941/1‑149                                                                                           AAACACCTGTTGCCGATGTAGGAGATTCTATGGCCGGAG‑GCAAATTTTCAGTAAAAACGCCATCGGCCTCTCTCAGCAACCTCGAGGTACGAGTCAGCGTGCCAGAGAATTTCTCCCCAGCATTGGATACTGCCCGTCAGTTTGGGCGG             >  5:311061/1‑149                                                                                                 CTGTTGCCGATGTAGGAGATTCTATGGCCGGAG‑GCAAATTTTCAGTAAAAACGCCATCGGCCTCTCTCAGCAACCTCGAGGTACGAGTCAGCGTGCCAGAGAATTTCTCCCCAGCATTGGATACTGCCCGTCAGTTTGGGCGGGCTGCG       >  3:133073/1‑149                                                                                                 CTGTTGCCGATGTAGGAGATTCTATGGCCGGAG‑GCAAATTTTCAGTAAAAACGCCATCGGCCTCTCTCAGCAACCTCGAGGTACGAGTCAGCGTGCCAGAGAATTTCTCCCCAGCATTGGATACTGCCCGTCAGTTTGGGCGGGCTGCG       >  6:272560/1‑149                                                                                                 CTGTTGCCGATGTAGGAGATTCTATGGCCGGAG‑GCAAATTTTCAGTAAAAACGCCATCGGCCTCTCTCAGCAACCTCGAGGTACGAGTCAGCGTGC                                                            <  4:101977/96‑1                                                                                                 CTGTTGCCGATGTAGGAGATTCTATGGCCGGAG‑GCAAATTTTCAGTAAAAACGCCATCGGCCTCTCTCAGCAACCTCGAGGTACGAGTCAGCGTGC                                                            >  3:101977/1‑96                                                                                                   GTTGCCGATGTAGGAGATTCTATGGCCGGAGCGCAAATTTTCAGTAAAAACGCCATCGGCCTCTCTCAGCAACCTCGAGGTACGAGTCAGCGTGC                                                            >  1:33489/1‑95                                                                                                   GTTGCCGATGTAGGAGATTCTATGGCCGGAG‑GCAAATTTTCAGTAAAAACGCCATCGGCCTCTCTCAGCAACCTCGAGGTACGAGTCAGCGTGC                                                            <  2:33489/94‑1                                                                                                    TTGCCGATGTAGGAGATTCTATGGCCGGAG‑GCAAATTTTCAGTAAAAACGCCATCGGCCTCTCTCAGCAACCTCGAGGTACGAGTCAGCGTGCCAGAGAATTTCTCCCCAGCATTGGATACTGCCCGTCAGTTTGGGCGGGCTGCGTT     <  1:133068/148‑1                                                                                                      GCCGATGTAGGAGATTCTATGGCCGGAG‑GCAAATTTTCAGTAAAAACGCCATCGGCCTCTCTCAGCAACCTCGAGGTACGAGTCAGCGTGCCAGAGAATTTCTCCCCAGCATTGGATACTGCCCGTCAGTTTGGGCGGGCTGCGTTGCA  >  4:12760/1‑149                                                                                                      GCCGATGTAGGAGATTCTATGGCCGGAG‑GCAAATTTTCAGTAAAAACGCCATCGGCCTCTCTCAGCAACCTCGAGGTACGAGTCAGCGTGCCAGAGAATTTCTCCCCAGCATTGGATACTGCCCGTCAGTTTGGGCGGGCTGCGTTG    >  3:63760/1‑147                                                                                                       CCGATGTAGGAGATTCTATGGCCGGAG‑GCAAATTTTCAGTAAAAACGCCATCGGCCTCTCTCAGCAACCTCGAGGTACGAGTCAGCGTGCCAGAGAATTTCTCCCCAGCATTGGATACTGCCCGTCAGTTTGGGCGGGCTGCGTTGCA  <  4:133073/148‑1                                                        ||||||||||||||||||||||||||||||||||||||||||||||||||                                                                                                                                                   TCCAGCTGCTCGGCCAGAATGCCTTCCCAGGCGGTGCGGCAGGCTCCGGTCGAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5220264‑5220318 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ATGTAGGAGATTCTATGGCCGGAG‑GCAAATTTTCAGTAAAAACGCCATCGGCCTCTCTCAGCAACCTCGAGGTACGAGTCAGCGTGCCAGAGAATTTCTCCCCAGCATTGGATACTGCCCGTCAGTTTGGGCGGGCTGCGTTGCA  >  NC_002947/6037861‑6038005

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.