New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5238639	53 (1.070)	4 (0.080)	4/250	NT	7.4%	coding (151/204 nt)	PP_5701	hypothetical protein
	?	NC_002947	= 5238748	48 (1.000)					intergenic (+56/‑225)	PP_5701/PP_4616	hypothetical protein/hypothetical protein

GAGGCGCTGCGGCCTCTTCTTGAGTCGGCGCTGGTTCAGGTGCAGATGTCCGCTGAGCCCAGGAACTTCGCACTAAGGCTGGTTAACGTGCCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5238546‑5238639 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggCAGGTCCGGCCCTTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAAGTCTTGACTACTGTGGTGACCGCTGTGGGAGCGG  <  NC_002947/5238748‑5238666                                                                                                                                                                                   GAGGCGCTGCGGCCTCTTCTTGAGTCGGCGCTGGTTCAGGTGCAGATGTCCGCTGAGCCCAGGAACTTCGCACTAAGGCTGGTTAACGTGCCGGCAGGTCCGGCCCTTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAAGTCTT                               >  4:119379/1‑148                       AGTCGGCGCTGGTTCAGGTGCAGATGTCCGCTGAGCCCAGGAACTTCGCACTAAGGCTGGTTAACGTGCCGGCAGGTCCGGCCCTTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAAGTCTTGACTACTGTGGTGACCGCTGTG         <  3:119379/148‑1                                              ATGTCCGCTGAGCCCAGGAACTTCGCACTAAGGCTGGTTAACGTGCCGGCAGGTCCGGCCCTTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAAGTCTTGACTACTGTGGTGACCGCTGTGGGAGCGG  <  3:255233/132‑1                                              ATGTCCGCTGAGCCCAGGAACTTCGCACTAAGGCTGGTTAACGTGCCGGCAGGTCCGGCCCTTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAAGTCTTGACTACTGTGGTGACCGCTGTGGGAGCGG  >  4:255233/1‑132                                                                                                                                                                                   GAGGCGCTGCGGCCTCTTCTTGAGTCGGCGCTGGTTCAGGTGCAGATGTCCGCTGAGCCCAGGAACTTCGCACTAAGGCTGGTTAACGTGCCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5238546‑5238639 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggCAGGTCCGGCCCTTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAAGTCTTGACTACTGTGGTGACCGCTGTGGGAGCGG  <  NC_002947/5238748‑5238666

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.