New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5445157 =	47 (0.950)	3 (0.060)	3/244	NT	6.1%	coding (113/798 nt)	thiD	phosphomethylpyrimidine kinase
	?	NC_002947	5445189 =	47 (1.000)					coding (145/798 nt)	thiD	phosphomethylpyrimidine kinase

TCGATCGAGCCGAGCATGCCCAACTTGACGGCGGCCACCGTGGAGTCGGCCAGCACGGCATTGGCCTGGGCCAGCACCCACTCGCGGTCGAGCACGCGGAAGTCGGAAACGTTGACGGTATCCTGCACGGTCAGGGCGGTCACTGCAGGTGCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5445310‑5445157 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtgcagGATACCGTCAACGTTTCCGACTTCCGCGTGCTCGACCGCGAGTGGGTGCTGGCCCAGGCCAATGCCGTGCTGGCCGACTCCACGGTGGCCGCCGTCAAGTTGGGCATGCTCGGCTCGATCGAGATGGTCGACACCGTCGCCGAACTG  >  NC_002947/5445189‑5445335                                                                                                                                                                                                                                                                                                               TCGATCGAGCCGAGCATGCCCAACTTGACGGCGGCCACCGTGGAGTCGGCCAGCACGGCATTGGCCTGGGCCAGCACCCACTCGCGGTCGAGCACGCGGAAGTCGGAAACGTTGACGGTATCCTGCACGGTCAGGGCGGTCACTGCAGG                                                                                                                                                          >  5:110222/1‑149   GATCGAGCCGAGCATGCCCAACTTGACGGCGGCCACCGTGGAGTCGGCCAGCACGGCATTGGCCTGGGCCAGCACCCACTCGCGGTCGAGCACGCGGAAGTCGGAAACGTTGACGGTATCCTGCACGGTCAGGGCGGTCACTGCAGGTG                                                                                                                                                        >  1:289911/1‑149   GATCGAGCCGAGCATGCCCAACTTGACGGCGGCCACCGTGGAGTCGGCCAGCACGGCATTGGCCTGGGCCAGCACCCACTCGCGGTCGAGCACGCGGAAGTCGGAAACGTTGACGGTATCCTGCACGGTCAGGGCGGTCACTGCAGGTG                                                                                                                                                        >  4:202654/1‑149   GATCGAGCCGAGCATGCCCAACTTGACGGCGGCCACCGTGGAGTCGGCCAGCACGGCATTGGCCTGGGCCAGCACCCACTCGCGGTCGAGCACGCGGAAGTCGGAAACGTTGACGGTATCCTGCACGGTCAGGGCGGTCACTGCAGGTG                                                                                                                                                        >  4:307534/1‑149    ATCGAGCCGAGCATGCCCAACTTGACGGCGGCCACCGTGGAGTCGGCCAGCACGGCATTGGCCTGGGCCAGCACCCACTCGCGGTCGAGCACGCGGAAGTCGGAAACGTTGACGGTATCCTGCACGGTCAGGGCGGTCACTGCAGGTGC                                                                                                                                                       <  2:64928/149‑1                                                                                                                     GGTATCCTGCACGGTCAGGGCGGTCACTGCAGGTGCAGGATACCGTCAACGTTTCCGACTTCCGCGTGCTCGACCGCGAGTGGGTGCTGGCCCAGGCCAATGCCGTGCTGGCCGACTCCACGGTGG                                                             >  3:75237/1‑126                                                                                                                     GGTATCCTGCACGGTCAGGGCGGTCACTGCAGGTGCAGGATACCGTCAACGTTTCCGACTTCCGCGTGCTCGACCGCGAGTGGGTGCTGGCCCAGGCCAATGCCGTGCTGGCCGACTCCACGGTGG                                                             <  4:75237/126‑1                                                                                                                      GTATCCTGCACGGTCAGGGCGGTCACTGCAGGTGCAGGATACCGTCAACGTTTCCGACTTCCGCGTGCTCGACCGCGAGTGGGTGCTGGCCCAGGCCAATGCCGTGCTGGCCGACTCCACGGTGGCCGCCGTCAAGTTGGGCATGCTCG                                     >  2:287852/1‑149                                                                                                                                                       GCAGGATCCCGGCACCGTTCCCGCATTCCGCGGCCTCGACCGCGAGTGGGTGCTGGCCCAGGCCAATGCCGTGCTGGCCGACTCCACGGTGGCCGCCGTCACGTTGGGCATGCTCGGCTCGATCGAGATGGTCGACACCGTCGCCGAAC    <  8:48552/149‑1                                                                                                                                                       GCAGGATACCGTCAACGTTTCCGACTTCCGCGTGCTCGACCGCGAGTGGGTGCTGGCCCAGGCCAATGCCGTGCTGGCCGACTCCACGGTGGCCGCCGTCAAGTTGGGCATGCTCGGCTCGATCGAGATGGTCGACACCGTCGCCGAAC    >  7:35016/1‑149                                                                                                                                                        CAGGATACCGTCAACGTTTCCGACTTCCGCGTGCTCGACCGCGAGTGGGTGCTGGCCCAGGCCAATGCCGTGCTGGCCGACTCCACGGTGGCCGCCGTCAAGTTGGGCATGCTCGGCTCGATCGAGATGGTCGACACCGTCGCCGAACT   >  1:216225/1‑149                                                                                                                                                         AGGATACCGTCAACGTTTCCGACTTCCGCGTGCTCGACCGCGAGTGTGTGCTGGCCCAGGCCAATGCCGTGCTGGCCGACTCCACGGTGGCCGCCGTCAAGTTGGGCATGCTCGGCTCGATCGAGATGGTCGACACCGTCGCCGAACTG  <  8:264522/149‑1                                                                                                                                                                                                                                                                                                               TCGATCGAGCCGAGCATGCCCAACTTGACGGCGGCCACCGTGGAGTCGGCCAGCACGGCATTGGCCTGGGCCAGCACCCACTCGCGGTCGAGCACGCGGAAGTCGGAAACGTTGACGGTATCCTGCACGGTCAGGGCGGTCACTGCAGGTGCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5445310‑5445157 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtgcagGATACCGTCAACGTTTCCGACTTCCGCGTGCTCGACCGCGAGTGGGTGCTGGCCCAGGCCAATGCCGTGCTGGCCGACTCCACGGTGGCCGCCGTCAAGTTGGGCATGCTCGGCTCGATCGAGATGGTCGACACCGTCGCCGAACTG  >  NC_002947/5445189‑5445335

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.