New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5445157 =	47 (0.950)	3 (0.060)	3/244	NT	6.1%	coding (113/798 nt)	thiD	phosphomethylpyrimidine kinase
	?	NC_002947	5445189 =	47 (1.000)					coding (145/798 nt)	thiD	phosphomethylpyrimidine kinase

CCGCCCAAACAGGTTTGGTGGTAAGCTCGCCGACCATGAATACCTACAGCTCCCGCCCCGTTGTCCTCTGTCTCTCCGGCCACGACCCCAGTGGCGGCGCCGGCTTGCAGGCAGATATCGAAGCCCTGATCGCCCAAGGCTGCCACGCTGCACCTGCAGTGACCGCCCTGACCGTGCAGGATACCGTCAACGTTTCCGACTTCCGCGTGCTCGACCGCGAGTGGGTGCTGGCCCAGGCCAATGCCGTGCTGGCCGACTCCACGGTGGCCGCCGTCAAGTTGGGCATGCTCGG  >  NC_002947/5445010‑5445301                                                                                                                                                    |                                                                                                                                                 cagttcggcgacggtgtcgaccatctcgatcgagccgagcatgcccaacttgacggcggccaccgtggagtcggccagcacggcattggcctgggccagcacacactcgcggtcgagcacgcggaagtcggaaacgttgacggtatcct                                                                                                                                                 <  8:264522‑M1/2‑1 (MQ=255)  agttcggcgacggtgtcgaccatctcgatcgagccgagcatgcccaacttgacggcggccaccgtggagtcggccagcacggcattggcctgggccagcacccactcgcggtcgagcacgcggaagtcggaaacgttgacggtatcctg                                                                                                                                                >  1:216225‑M1/147‑149 (MQ=255)   gttcggcgacggtgtcgaccatctcgatcgagccgagcatgcccaacttgacggcggccaccgtggagtcggccagcacggcattggcctgggccagcacccactcgcggtcgagcacgcggaagtcggaaacgttgacggtatcctgc                                                                                                                                               >  7:35016‑M1/146‑149 (MQ=255)   gttcggcgacggtgtcgaccatctcgatcgagccgagcatgcccaacgtgacggcggccaccgtggagtcggccagcacggcattggcctgggccagcacccactcgcggtcgaggccgcggaatgcgggaacggtgccgggatcctgc                                                                                                                                               <  8:48552‑M1/4‑1 (MQ=255)   gCCCAAACAGGTTTGGTGGTAAGCTCGCCGACCATGAATACCTACAGCTCCCGCCCCGTTGTCCTCTGTCTCTCCGGCCACGACCCCAGTGGCGGCGCCGGCTTGCAGGCAGATATCGAAGCCCTGATCGCCCAAGGCTGCCACGCTg                                                                                                                                                >  6:31522/1‑148 (MQ=255)    cccAAACAGGTTTGGTGGTAAGCTCGCCGACCATGAATACCTACAGCTCCCGCCCCGTTGTCCTCTGTCTCTCCGGCCACGACCCCAGTGGCGGCGCCGGCTTGCAGGCAGATATCGAAGCCCTGATCGCCCAAGGCTGCCACGCTGCa                                                                                                                                              >  2:26799/1‑149 (MQ=255)      cAAACAGGTTTGGTGGTAAGCTCGCCGACCATGAATACCTACAGCTCCCGCCCCGTTGTCCTCTGTCTCTCCGGCCACGACCCCAGTGGCGGCGCCGGCTTGCAGGCAGATATCGAAGCCCTGATCGCCCAAGGCTGCCACGCTGCAcc                                                                                                                                            >  2:175743/1‑149 (MQ=255)          cAGGTTTGGTGGTAAGCTCGCCGACCATGAATACCTACAGCTCCCGCCCCGTTGTCCTCTGTCTCTCCGGCCACGACCCCAGTGGCGGCGCCGGCTTGCAGGCAGATATCGAAGCCCTGATCGCCCAAGGCTGCCACGCTGCACCTGCa                                                                                                                                        <  5:114724/149‑1 (MQ=255)            ggTTTGGTGGTAAGCTCGCCGACCATGAATACCTACAGCTCCCGCCCCGTTGTCCTCTGTCTCTCCGGCCACGACCCCAGTGGCGGCGCCGGCTTGCAGGCAGATATCGAAGCCCTGATCGCCCAAGGCTGCCACGCTGCACCTGCAGt                                                                                                                                      <  6:306693/149‑1 (MQ=255)            ggTTTGGTGGTAAGCTCGCCGACCATGAATACCTACAGCTCCCGCCCCGTTGTCCTCTGTCTCTCCGGCCACGACCCCAGTGGCGGCGCCGGCTTGCAGGCAGATATCGAAGCCCTGATCGCCCAAGGCTGCCACGCTGCACCTGCAGt                                                                                                                                      <  5:31522/149‑1 (MQ=255)                tggtggTAAGCTCGCCGACCATGAATACCTACAGCTCCCGCCCCGTTGTCCTCTGTCTCTCCGGCCACGACCCCAGTGGCGGCGCCGGCTTGCAGGCAGATATCGAAGCCCTGATCGCCCAAGGCTGCCACGCTGCACCTGCAGTGAc                                                                                                                                   <  3:283740/148‑1 (MQ=255)                tggtggTAAGCTCGCCGACCATGAATACCTACAGCTCCCGCCCCGTTGTCCTCTGTCTCTCCGGCCACGACCCCAGTGGCGGCGCCGGCTTGCAGGCAGATATCGAAGCCCTGATCGCCCAAGGCTGCCACGCTGCACCTGCAGTGAc                                                                                                                                   <  2:77055/148‑1 (MQ=255)                              ccGACCATGAATACCTACAGCTCCCGCCCCGTTGTCCTCTGTCTCTCCGGCCACGACCCCAGTGGCGGCGCCGGCTTGCAGGCAGATATCGAAGCCCTGATCGCCCAAGGCTGCCACACTGCACCTGCAGTGACCGCCCTGACCGTGCa                                                                                                                    <  1:22343/149‑1 (MQ=255)                                    cgagcatgcccaacttgacggcggccaccgtggagtcggccagcacggcattggcctgggccagcacccactcgcggtcgagcacgcggaagtcggaaacgttgacggtatcCTGCACCTGCAGTGACCGCCCTGACCGTGCAGGATAc                                                                                                              >  2:287852‑M1/113‑149 (MQ=255)                                       aaTACCTACAGCTCCCGCCCCGTTGTCCTCTGTCTCTCCGGCCACGACCCCAGTGGCGGCGCCGGCTTGCAGGCAGATATCGAAGCCCTGATCGCCCAAGGCTGCCACGCTGCACCTGCAGTGACCGCCCTGACCGTGCAGGATACCGt                                                                                                           <  1:26799/149‑1 (MQ=255)                                           ccTACAGCTCCCGCCCCGTTGTCCTCTGTCTCTCCGGCCACGACCCCAGTGGCGGCGCCGGCTTGCAGGCAGATATCGAAGCCCTGATCGCCCAAGGCTGCCACGCTGCACCTGCAGTGAGCGCCCTGACCGTGCAGGATACCGTCAAc                                                                                                       <  1:175743/149‑1 (MQ=255)                                            cTACAGCTCCCGCCCCGTTGTCCTCTGTCTCTCCGGCCACGACCCCAGTGGCGGCGCCGGCTTGCAGGCAGATATCGAAGCCCTGATCGCCCAAGGCTGCCACGCTGCACCTGCAGTGa                                                                                                                                    <  1:273412/119‑1 (MQ=255)                                            cTACAGCTCCCGCCCCGTTGTCCTCTGTCTCTCCGGCCACGACCCCAGTGGCGGCGCCGGCTTGCAGGCAGATATCGAAGCCCTGATCGCCCAAGGCTGCCACGCTGCACCTGCAGTGa                                                                                                                                    >  2:273412/1‑119 (MQ=255)                                             tACAGCTCCCGCCCCGTTGTCCTCTGTCTCTCCGGCCACGACCCCAGTGGCGGCGCCGGCTTGCAGGCAGATATCGAAGCCCTGATCGCCCAAGGCTGCCACGCTGCACCTGCAGTGACCGCCCTGACCGTGCAGGATACCGTCAACGt                                                                                                     >  1:150261/1‑149 (MQ=255)                                                 gCTCCCGCCCCGTTGTCCTCTGTCTCTCCGGCCACGACCCCAGTGGCGGCGCCGGCTTGCAGGCAGATATCGAAGCCCTGATCGCCCAAGGCTGCCACGCTGCACCTGCAGTGACCGCCCTGACCGTGCAGGATACCGTCAACGTTTcc                                                                                                 <  6:109125/149‑1 (MQ=255)                                                   tCCCGCCCCGTTGTCCTCTGTCTCTCCGGCCACGACCCCAGTGGCGGCGCCGGCTTGCAGGCAGATATCGAAGCCCTGATCGCCCAAGGCTGCCACGCTGCACCTGCAGTGACCGCCCTGACCGTGCAGGATACCGTCAACGTTTCCGa                                                                                               >  2:43160/1‑149 (MQ=255)                                                        ccccGTTGTCCTCTGTCTCTCCGGCCACGACCCCAGTGGCGGCGCCGGCTTGCAGGCAGATATCGAAGCCCTGATCGCCCAAGGCTGCCACGCTGCACCTGCAGTGACCGCCCTGACCGTGCAGGATACCGTCAACGTTTCCGACTTcc                                                                                          >  2:73604/1‑149 (MQ=255)                                                          ccGTTGTCCTCTGTCTCTCCGGCCACGACCCCAGTGGCGGCGCCGGCTTGCAGGCAGATATCGAAGCCCTGATCGCCCAAGGCTGCCACGCTGCACCTGCAGTGACCGCCCTGACCGTGCAGGATACCGTCAACGTTTCCGACTTCcgc                                                                                        <  2:150261/149‑1 (MQ=255)                                                            ccaccgtggagtcggccagcacggcattggcctgggccagcacccactcgcggtcgagcacgcggaagtcggaaacgttgacggtatcCTGCACCTGCAGTGACCGCCCTGACCGTGCAGGATAcc                                                                                                             <  4:75237‑M1/38‑1 (MQ=255)                                                            ccaccgtggagtcggccagcacggcattggcctgggccagcacccactcgcggtcgagcacgcggaagtcggaaacgttgacggtatcCTGCACCTGCAGTGACCGCCCTGACCGTGCAGGATAcc                                                                                                             >  3:75237‑M1/89‑126 (MQ=255)                                                                tCCTCTGTCTCTCCGGCCACGACCCCAGTGGCGGCGCCGGCTTGCAGGCGGATATCGAAGCCCTGATCGCCCAAGGCTGCCACGCTGCACCTGCAGTGACCGCCCTGACCGTGCAGGATACCGTCAACGTTTCCGACTTCCGCGTGCTc                                                                                  >  7:219178/1‑149 (MQ=255)                                                                 ccTCTGTCTCTCCGGCCACGACCCCAGTGGCGGCGCCGGCTTGCAGGCAGATATCGAAGCCCTGATCGCCCAAGGCTGCCACGCTGCACCTGCAGTGACCGCCCTGACCGTGCAGGATACCGTCAACGTTTCCGACTTCCGCGTGCTc                                                                                  >  1:148018/1‑148 (MQ=255)                                                                  ctctGTCTCTCCGGCCACGACCCCAGTGGCGGCGCCGGCTTGCAGGCAGATATCGAAGCCCTGATCGCCCAAGGCTGCCACGCTGCACCTGCAGTGACCGCCCTGACCGTGCAGGATACCGTCAACGTTTCCGACTTCCGCGTGCTCGa                                                                                >  3:202654/1‑149 (MQ=255)                                                                    ctGTCTCTCCGGCCACGACCCCAGTGGCGGCGCCGGCTTGCAGGCAGATATCGAAGCCCTGATCGCCCAAGGCTGCCACGCTGCACCTGCAGTGACCGCCCTGACCGTGCAGGATACCGTCAACGTTTCCGACTTCCGCGTGCTCGAcc                                                                              >  6:5775/1‑149 (MQ=255)                                                                           tcCGGCCACGACCCCAGTGGCGGCGCCGGCTTGCAGGCAGATATCGAAGCCCTGATCGCCCAAGGCTGCCACGCTGCACCTGCAGTGACCGCCCTGACCGTGCAGGATACCGTCAACGTTTCCGACTTCCGCGTGCTCGACCGCGAGTg                                                                       >  2:247280/1‑149 (MQ=255)                                                                           tcCGGCCACGACCCCAGTGGCGGCGCCGGCTTGCAGGAAGATATCGAAGCCCTGATCGCCCAAGGCTGCCACGCTGCACCTGCAGTGACCGCCCTGACCGTGCACGATACCGTCAACGTTTCCGACTTCCCCGTGCTCGCCCGCGAGTg                                                                       >  2:289911/1‑149 (MQ=255)                                                                             cGGCCACGACCCCAGTGGCGGCGCCGGCTTGCAGGCAGATATCGAAGCCCTGATCGCCCAAGGCTGCCACGCTGCACCTGCAGTGACCGCCCTGACCGTGCAGGATACCGTCAACGTTTCCGACTTCCGCGTGCTCGACCGCGAGTggg                                                                     >  3:141342/1‑149 (MQ=255)                                                                             cGGCCACGACCCCAGTGGCGGCGCCGGCTTGCAGGCAGATATCGAAGCCCTGATCGCCCAAGGCTGCCACGCTGCACCTGCAGTGACCGCCCTGACCGTGCAGGATACCGTCAACGTTTCCGACTTCCGCGTGCTCGACCGCGAGTggg                                                                     <  1:247280/149‑1 (MQ=255)                                                                              ggCCACGACCCCAGTGGCGGCGCCGGCTTGCAGGCAGATATCGAAGCCCTGATCGCCCAAGGCTGCCACGCTGCACCTGCAGTGACCGCCCTGACCGTGCAGGATACCGTCAACGTTTCCGACTTCCGCGTGCTCGACCGCGAGTGGGt                                                                    <  6:301425/149‑1 (MQ=255)                                                                                      ccccAGTGGCGGCGCCGGCTTGCAGGCAGATATCGAAGCCCTGATCGCCCAAGGCTGCCACGCTGCACCTGCAGTGACCGCCCTGACCGTGCAGGATACCGTCAACGTTTCCGACTTCCGCGTGCTCGACCGCGAGTGGGTGCTGGccc                                                            <  1:73604/149‑1 (MQ=255)                                                                                       cccAGTGGCGGCGCCGGCTTGCAGGCAGATATCGAAGCCCTGATCGCCCAAGGCTGCCACGCTGCACCTGCAGTGACCGCCCTGACCGTGCAGGATACCGTCAACGTTTCCGACTTCCGCGTGCTCGACCGCGAGTGGGTGCTGGcc                                                             >  3:225138/1‑147 (MQ=255)                                                                                       cccAGTGGCGGCGCCGGCTTGCAGGCAGATATCGAAGCCCTGATCGCCCAAGGCTGCCACGCTGCACCTGCAGTGACCGCCCTGACCGTGCAGGATACCGTCAACGTTTCCGACTTCCGCGTGCTCGACCGCGAGTGGGTGCTGGCCCa                                                           <  4:225138/149‑1 (MQ=255)                                                                                         cAGTGGCGGCGCCGGCTTGCAGGCAGATATCGAAGCCCTGATCGCCCAAGGCTGCCACGCTGCACCTGCAGTGACCGCCCTGACCGTGCAg                                                                                                                   >  5:145761/1‑91 (MQ=255)                                                                                         cAGTGGCGGCGCCGGCTTGCAGGCAGATATCGAAGCCCTGATCGCCCAAGGCTGCCACGCTGCACCTGCAGTGACCGCCCTGACCGTGCAg                                                                                                                   <  6:145761/91‑1 (MQ=255)                                                                                         cAGTGGCGGCGCCGGCTTGCAGGCAGATATCGAAGCCCTGATCGCCCAAGGCTGCCACGCTGCACCTGCAGTGACCGCCCTGACCGTGCAGGATACCGTCAACGTTTCCGACTTCCGCGTGCTCGACCGCGAGTGGGTGCTGGCCCAgg                                                         >  6:110222/1‑149 (MQ=255)                                                                                          aGTGGCGGCGCCGGCTTGCAGGCAGATATCGAAGCCCTGATCGCCCAAGGCTGCCACGCTGCACCTGCAGTGACCGCCCTGACCGTGCAGGATACCGTCAACGTTTCCGACTTCCGCGTGCTCGACCGCGAGTGGGTGCTGGCCCAGGc                                                        <  2:250889/149‑1 (MQ=255)                                                                                               cggcgCCGGCTTGCAGGCAGATATCGAAGCCCTGATCGCCCAAGGCTGCCACGCTGCACCTGCAGTGACCGCCCTGACCGTGCAGGATACCGTCAACGTTTCCGACTTCCGCGTGCTCGACCGCGAGTGGGTGCTGGCCCAGGCCAATg                                                   <  2:25779/149‑1 (MQ=255)                                                                                               cggcgCCGGCTTGCAGGCAGATATCGAAGCCCTGATCGCCCAAGGCTGCCACGCTGCACCTGCAGTGACCGCCCTGACCGTGCAGGATACCGTCAACGTTTCCGACTTCCGCGTGCTCGACCGCGAGTGGGTGCTGGCCCAGGCCAATg                                                   >  4:250241/1‑149 (MQ=255)                                                                                                    ccGGCTTGCAGGCAGATATCGAAGCCCTGATCGCCCAAGGCTGCCACGCTGCACCTGCAGTGACCGCCCTGACCGTGCAGGATACCGTCAACGTTTCCGACTTCCGCGTGCTCGACCGCGAGTGGGTGCTGGCCCAGGCCAATGCCGTg                                              >  7:264522/1‑149 (MQ=255)                                                                                                       gCTTGCAGGCAGATATCGAAGCCCTGATCGCCCAAGGCTGCCACGCTGCACCTGCAGTGACCGCCCTGACCGTGCAGGATACCGTCAACGTTTCCGACTTCCGCGTGCTCGACCGCGAGTGGGTGCTGGCCCAGGCCAATGCCGTGCTg                                           <  2:148018/149‑1 (MQ=255)                                                                                                         ttGCAGGCAGATATCGAAGCCCTGATCGCCCAAGGCTGCCACGCTGCACCTGCAGTGACCGCCCTGACCGTGCAGGATACCGTCAACGTTTCCGACTTCCGCGTGCTCGACCGCGAGTGGGTGCTGGCCCAGGCCAATGCCGTGCTGGc                                         <  3:281648/149‑1 (MQ=255)                                                                                                           gcaggcagATATCGAAGCCCTGATCGCCCAAGGCTGCCACGCTGCACCTGCAGTGACCGCCCTGACCGTGCAGGATACCGTCAACGTTTCCGACTTCCGCGTGc                                                                                    >  1:42877/1‑104 (MQ=255)                                                                                                           gcaggcagATATCGAAGCCCTGATCGCCCAAGGCTGCCACGCTGCACCTGCAGTGACCGCCCTGACCGTGCAGGATACCGTCAACGTTTCCGACTTCCGCGTGc                                                                                    <  2:42877/104‑1 (MQ=255)                                                                                                             aggcagATATCGAAGCCCTGATCGCCCAAGGCTGCCACGCTGCACCTGCAGTGACCGCCCTGACCGTGCAGGATACCGTCAACGTTTCCGACTTCCGCGTGCTCGACCGCGAGTGGGTGCTGGCCCAGGCCAATGCCGTGCTGGCCGAc                                     >  3:307534/1‑149 (MQ=255)                                                                                                                     atCGAAGCCCTGATCGCCCAAGGCTGCCACGCTGCACCTGCAGTGACCGCCCTGACCGTGCAGGATACCGTCAACGTTTCCGACTTCCGCGTGCTCGACCGCGAGTGGGTGCTGGCCCAGGCCAATGCCGTGCTGGCCGACTCCACGGt                             >  8:291028/1‑149 (MQ=255)                                                                                                                        gAAGCCCTGATCGCCCAAGGCTGCCACGCTGCACCTGCAGTGACCGCCCTGACCGTGCAGGATACCGTCAACGTTTCCGACTTCCGCGTGCTCGACCGCGAGTGGGTGCTGGCCCAGGCCAATGCCGTGCTGGCCGACTCCCCGGTgga                          >  7:48552/1‑148 (MQ=255)                                                                                                                                     cccAAGGCTGCCACGCTGCACCTGCAGTGACCGCCCTGACCGTGCAGGATACCGTCAACGTTTCCGACTTCCGCGTGCTCGACCGCGAGTGGGTGCTGGCCCAGGCCAATGCCGTGCTGGCCGACTCCACGGTGGCCGCCGTCAAGTTg             >  4:186210/1‑149 (MQ=255)                                                                                                                                      ccAAGGCTGCCACGCTGCACCTGCAGTGACCGCCCTGACCGTGCAGGATACCGTCAACGTTTCCGACTTCCGCGTGCTCGACCGCGAGTGGGTGCTGGCCCAGGCCAATGCCGTGCTGGCCGACTCCACGGTGGCCGCCGTCAAGTTgg            <  7:291028/149‑1 (MQ=255)                                                                                                                                      ccAAGGCTGCCACGCTGCACCTGCAGTGACCGCCCTGACCGTGCAGGATACCGTCAACGTTTCCGACTTCCGCGTGCTCGACCGCGAGTGGGTGCTGGCCCAGGCCAATGCCGTGCTGGCCGACTCCACGGTGGCCGCCATCAAGTTgg            <  1:43160/149‑1 (MQ=255)                                                                                                                                       cAAGGCTGCCACGCTGCACCTGCAGTGACCGCCCTGACCGTGCAGGATACCGTCAACGTTTCCGACTTCCGCGTGCTCGACCGCGAGTGGGTGCTGGCCCAGGCCAATGCCGTGCTGGCCGACTCCACg                               <  7:16745/129‑1 (MQ=255)                                                                                                                                       cAAGGCTGCCACGCTGCACCTGCAGTGACCGCCCTGACCGTGCAGGATACCGTCAACGTTTCCGACTTCCGCGTGCTCGACCGCGAGTGGGTGCTGGCCCAGGCCAATGCCGTGCTGGCCGACTCCACg                               >  8:16745/1‑129 (MQ=255)                                                                                                                                                cACGCTGCACCTGCAGTGACCGCCCTGACCGTGCAGGATACCGTCAACGTTTCCGACTTCCGCGTGCTCGACCGCGAGTGGGTGCTGGCCCAGGCCAATGCCGTGCTGGCCGACTCCACGGTGGCCGCCGTCAAGTTGGGCATgctcgg  >  2:216091/1‑149 (MQ=255)                                                                                                                                                    |                                                                                                                                                 CCGCCCAAACAGGTTTGGTGGTAAGCTCGCCGACCATGAATACCTACAGCTCCCGCCCCGTTGTCCTCTGTCTCTCCGGCCACGACCCCAGTGGCGGCGCCGGCTTGCAGGCAGATATCGAAGCCCTGATCGCCCAAGGCTGCCACGCTGCACCTGCAGTGACCGCCCTGACCGTGCAGGATACCGTCAACGTTTCCGACTTCCGCGTGCTCGACCGCGAGTGGGTGCTGGCCCAGGCCAATGCCGTGCTGGCCGACTCCACGGTGGCCGCCGTCAAGTTGGGCATGCTCGG  >  NC_002947/5445010‑5445301

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.