| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 5785094 = | 62 (1.260) | 4 (0.090) | 3/244 | NT | 6.1% | coding (98/1461 nt) | PP_5068 | hypothetical protein |
| ? | NC_002947 | 5785152 = | 63 (1.340) | coding (156/1461 nt) | PP_5068 | hypothetical protein | |||||
AGCCGAACTGGTGGCCGGAATAAACCATCGCCCGAGGGTCGGCCTCTTCCCACAGTTTGTGGCCGCTGAACAGCTCGGCGAACACCGGCAGCTCGGCCTGGGCGGGGTCGAGGTCGAGCAAGGCCATGGCCGACTCGCTCGCTACCACCAGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5785246‑5785094‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccaggc‑CGAG‑CTGCCGGTGTTCGCCGAGCTGTTCAGCGGCCACAAACTGTGGGAAGAGGCCGACCCTCGGGCGATGGTTTATTCCGGCCACCAGTTCGGCTCGTACAACCCACGTCTGGGCGACGGCCGTGGCCTGCTGCTGGCCGAAGTGC > NC_002947/5785152‑5785297 AGCCGAACTGGTGGCCGGAATAAACCATCGCCCGAGGGTCGGCCTCTTCCCACAGTTTGTGGCCGCTGAACAGCTCGGCGAACACCGGCAGCTCGGCCTGGGCGGGGTCGAGGTCGAGCAAGGCCATGGCCGACTCGCTCGCTACCAC > 4:291143/1‑148 CCGAACTGGTGGCCGGAATAAACCATCGCCCGAGGGTCGGCCTCTTCCCACAGTTTGTGGCCGCTGAACAGCTCGGCGAACACCGGCAGCTCGGCCTGGGCGGGGTCGAGGTCGAGCAAGGCCATGGCCGACTCGCTCGCTACCACCAG > 2:141109/1‑149 CCGAACTGGTGGCCGGAATAAACCATCGCCCGAGGGTCGGCCTCTTCCCACAGTTTGTGGCCGCTGAACAGCTCGGCGAACACCGGCAGCTCGGCCTGGGCGGGGTCGAGGTCGAGCAAGGCCATGGCCGACTCGCTCGCTACCACCAG > 3:145368/1‑149 GAACTGGTGGCCGGAATAAACCATCGCCCGAGGGTCGGCCTCTTCCCACAGTTTGTGGCCGCTGAACAGCTCGGCGAACACCGGCAGCTCGGCCTGGGCGGGGTCGAGGTCGAGCAAGGCCATGGCCGACTCGCTCGCTACCACCAGGC > 1:197554/1‑149 TCGGCCTGGGCGGGGTCGAGGTCGAGCAAGGCCATGGCCGACTCGCTCGCTACCACCAGGC‑CGAG‑CTGCCGGTGTTCGCCGAGCTGTTCAGCGGCCACAAACTGTGGGAAGAGGCCGACCCTCGGGCGATGGTTTATTCCGGCCACCAG > 4:59870/1‑149 GCCTGGGCGGGGTCGAGGTCGAGCAAGGCCATGGCCGACTCGCTCGCTACCACCAGGCGCGGGTCTGCCGGTGTTCGCCGAGCTGTTCAGCGGCCACAAACTGTGGGAAGAGGCCGACCCTCGGGCGATGGTTTATTCCGGCCACCAGT > 5:49781/1‑149 GCCTGGGCGGGGTCGAGGTCGAGCAAGGCCATGGCCGACTCGCTCGCTACCACCAGGC‑CGAG‑CTGCCGGTGTTCGCCGAGCTGTTCAGCGGCCACAAACTGTGGGAAGAGGCCGACCCTCGGGCGATGGTTTATTCCGGCCACCAGTTC > 4:155840/1‑149 GGGTCGAGGTCGAGCAAGGCCATGGCCGACTCGCTCGCTACCACCAGGC‑CGAG‑CTGCCGGTGTTCGCCGAGCTGTTCAGCGGCCACAAACTGTGGGAAGAGGCCGACCCTCGGGCGATGGTTTATTCCGGCCACCAGTTCGGCTCGTAC < 3:59870/149‑1 GGC‑CGAG‑CTGCCGGTGTTCGCCGAGCTGTTCAGCGGCCACAAACTGTGGGAAGAGGCCGACCCTCGGGCGATGGTTTATTCCGGCCACCAGTTCGGCTCGTACAACCCACGTCTGGGCGACGGCCGTGGCCTGCTGCTGGCCGAAGTGC > 1:258081/1‑149 GC‑CGAG‑CTACCGGTGTTCGCCGAGCTGTTCAGCGGCCACAAACTGTGGGAAGAGGCCGACCCTCGGGCGATGGTTTATTCCG < 5:194890/82‑1 GC‑CGAG‑CTACCGGTGTTCGCCGAGCTGTTCAGCGGCCACAAACTGTGGGAAGAGGCCGACCCTCGGGCGATGGTTTATTCCG > 6:194890/1‑82 AGCCGAACTGGTGGCCGGAATAAACCATCGCCCGAGGGTCGGCCTCTTCCCACAGTTTGTGGCCGCTGAACAGCTCGGCGAACACCGGCAGCTCGGCCTGGGCGGGGTCGAGGTCGAGCAAGGCCATGGCCGACTCGCTCGCTACCACCAGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5785246‑5785094‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccaggc‑CGAG‑CTGCCGGTGTTCGCCGAGCTGTTCAGCGGCCACAAACTGTGGGAAGAGGCCGACCCTCGGGCGATGGTTTATTCCGGCCACCAGTTCGGCTCGTACAACCCACGTCTGGGCGACGGCCGTGGCCTGCTGCTGGCCGAAGTGC > NC_002947/5785152‑5785297 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |