New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 5841842 = | 44 (0.890) | 4 (0.080) | 4/248 | NT | 8.5% | coding (411/1431 nt) | calB | coniferyl aldehyde dehydrogenase |
? | NC_002947 | 5841870 = | 44 (0.920) | coding (439/1431 nt) | calB | coniferyl aldehyde dehydrogenase |
TGGCCCACCTCGACCTCACCGAGCACAACGCTGACCAGGTCTGTGGGGAACACACGCTCGAGCAGTTGCTGCAGGGCCAGGCCCGTCGCGGGCGTGGCCTCGCTAAGCTTGAGCATGACCCGGTTG‑CCGGCGGCCAGGGCGCAGGTCAAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5841991‑5841842 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caacCGGGTCATGCTCAAGCTTAGCGAGGCCACGCCCGCGACGGGCCTGGCCCTGCAGCAACTGCTCGAGCGTGTGTTCCCCACAGACCTGGTCAGCGTTGTGCTCGGTGAGGTCGAGGTGGGCCAGGCCTTCGCCCGCCTGCCCTTCGAC > NC_002947/5841870‑5842016 TGGCCCACCTCGACCTCACCGAGCACAACGCTGACCAGGTCTGTGGGGAACACACGCTCGAGCAGTTGCTGCAGGGCCAGGCCCGTCGCGGGCGTGGCCTCGCTAAGCTTGAGCATGACCCGGTTG‑CCGGCGGCCAGGGCGCAGGTCAA > 8:50963/1‑149 GACCTCACCGAGCACAACGCTGACCAGGTCTGTGGGGAACACACGCTCGAGCAGTTGCTGCAGGGCCAGGCCCGTCGCGGGCGTGGCCTCGCTAAGCTTGAGCATGACCCGGTTGACCTGCGCCCTGGCCGCCGG‑CAACCGGGTCATG < 6:234636/148‑1 CCCGGTTG‑CCGGCGGCCAGGGCGCAGGTCAACCGGGTCATTCTCAAGCTTAGCGAGGCCACGCCCGCGACGGGCCTGGCCCTGCAGCAACTGCTCGAGCGTGTGTTCCC < 2:284153/109‑1 CCCGGTTG‑CCGGCGGCCAGGGCGCAGGTCAACCGGGTCATGCTCAAGCTTAGCGAGGCCACGCCCGCGACGGGCCTGGCCCTGCAGCAACTGCTCGAGCGTGTGTTCCC > 1:284153/1‑109 GGCCAGGGCGCAGGTCAACCGGGTCATGCTCAAGCTTAGCGAGGCCACGCCCGCGACGGGCCTGGCCCTGCAGCAACTGCTCGAGCGTGTGTTCCCCACAGACCTGGTCAGCGTTGTGCTCGGTGAGGTCGAGGTGGGCCAGGCCTTCG < 5:234636/149‑1 CAACCGGGTCATGCTCAAGCTTAGCGAGGCCACGCCCGCGACGGGCCTGGCCCTGCAGCAACTGCTCGAGCGTGTGTTCCCCACAGACCTGGTCAGCGTTGTGCTCGGTGAGGTCGAGGTGGGCCAGGCCTTCGCCCGCCTGCCCTTCG > 8:58296/1‑149 AACCGGGTCATGCTCAAGCTTAGCGAGGCCACGCCCGCGACGGGCCTGGCCCTGCAGCAACTGCTCGAGCGTGTGTTCCCCACAGACCTGGTCAGCGTTGTGCTCGGTGAGGTCGAGGTGGGCCAGGCCTTCGCCCGCCTGCCCTTCGA < 1:164011/149‑1 AACCGGGTCATGCTCAAGCTTAGCGAGGCCACGCCCGCGACGGGCCTGGCCCTGCAGCAACTGCTCGAGCGTGTGTTCCCCACAGACCTGGTCAGCGTTGTGCTCGGTGAGGTCGAGGTGGGCCAGGCCTTCGCCCGCCTGCCCTTCGA > 8:185117/1‑149 ACCGGGTCATGCTCAAGCTTAGCGAGGCCACGCCCGCGACGGGCCTGGCCCTGCAGCAACTGCTCGAGCGTGTGTTCCCCACAGACCTGGTCAGCGTTGTGCTCGGTGAGGTCGAGGTGGGCCAGGCCTTCGCCCGCCTGCCCTTCGAC < 7:58296/149‑1 TGGCCCACCTCGACCTCACCGAGCACAACGCTGACCAGGTCTGTGGGGAACACACGCTCGAGCAGTTGCTGCAGGGCCAGGCCCGTCGCGGGCGTGGCCTCGCTAAGCTTGAGCATGACCCGGTTG‑CCGGCGGCCAGGGCGCAGGTCAAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5841991‑5841842 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caacCGGGTCATGCTCAAGCTTAGCGAGGCCACGCCCGCGACGGGCCTGGCCCTGCAGCAACTGCTCGAGCGTGTGTTCCCCACAGACCTGGTCAGCGTTGTGCTCGGTGAGGTCGAGGTGGGCCAGGCCTTCGCCCGCCTGCCCTTCGAC > NC_002947/5841870‑5842016 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |