New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5841842 =	44 (0.890)	4 (0.080)	4/248	NT	8.5%	coding (411/1431 nt)	calB	coniferyl aldehyde dehydrogenase
	?	NC_002947	5841870 =	44 (0.920)					coding (439/1431 nt)	calB	coniferyl aldehyde dehydrogenase

AAAGCACTTGCAACGCTGGATGCGCAGCCGCCGACGCCGCGTCGGCCTGGCGTTCCAGCCGGCCAGCGCACAGGTGCGCTATCAACCCTTGGGCGTGGTCGGCGTCATCGTGCCGTGGAACTACCCGTTGTTCCTCGCCATCGGCCCGTTGAC‑CT‑GCGCCCTGGCCGCCGG‑CAACCGGGTCATGCTCAAGCTTAGCGAGGCCACGCCCGCGACGGGCCTGGCCCTGCAGCAACTGCTCGAGCGTGTGTTCCCCACAGACCTGGTCAGCGTTGTGCTCGGTGAGGTCGAGGTGGG  >  NC_002947/5841695‑5841988                                                                                                                                                    |                                                                                                                                                      gtcgaagggcaggcgggcgaaggcctggcccacctcgacctcaccgagcacaacgctgaccaggtctgtggggaacacacgctcgagcagttgctgcagggccaggcccgtcgcgggcgtggcctcgctaagcttgagcatgacccgGt                                                                                                                                                      <  7:58296‑M1/2‑1 (MQ=255)  tcgaagggcaggcgggcgaaggcctggcccacctcgacctcaccgagcacaacgctgaccaggtctgtggggaacacacgctcgagcagttgctgcagggccaggcccgtcgcgggcgtggcctcgctaagcttgagcatgacccgGtt                                                                                                                                                     <  1:164011‑M1/3‑1 (MQ=255)  tcgaagggcaggcgggcgaaggcctggcccacctcgacctcaccgagcacaacgctgaccaggtctgtggggaacacacgctcgagcagttgctgcagggccaggcccgtcgcgggcgtggcctcgctaagcttgagcatgacccgGtt                                                                                                                                                     >  8:185117‑M1/147‑149 (MQ=255)   cgaagggcaggcgggcgaaggcctggcccacctcgacctcaccgagcacaacgctgaccaggtctgtggggaacacacgctcgagcagttgctgcagggccaggcccgtcgcgggcgtggcctcgctaagcttgagcatgacccgGTTg                                                                                                                                                    >  8:58296‑M1/146‑149 (MQ=255)            aaCGCTGGATGCGCAGCCGCCGACGCCGCGGCGGCCTGGCGTTCCAGCCGGCCAGCGCACAGGTGCGCTATCAACCCTTGGGCGTGGTCGGCGTCATCGTGCCGTGGAACTACCCGTTGTTCCTCGCCATCGGCCCGTTGAC‑CT‑GCGcc                                                                                                                                         <  6:51838/149‑1 (MQ=255)               gCTGGATGCGCAGCCGCCGACGCCGCGTCGGCCGGGCGTTCCAGCCGGCCAGCGCACAGGTGCGCTATCAACCCTTGGGCGTGGTCGGCGTCATCGTGCCGTGGCACTACCCGTTCTTCCTCGCCATCGGCCCGTTGAC‑CT‑GCGCCCTg                                                                                                                                      <  6:104905/149‑1 (MQ=255)                cTGGATGCGCAGCCGCCGACGCCGCGTCGGCCTGGCGTTCCAGCCGGCCAGCGCACAGGTGCGCTATCAACCCTTGGGCGTGGTCGGCGTCATCGTGCCGTGGAACTACCCGTTGTTCCTCGCCATCGGCCCGTTGAC‑CT‑GCGCCCTgg                                                                                                                                     <  1:176436/149‑1 (MQ=255)                  cgaaggcctggcccacctcgacctcaccgagcacaacgctgaccaggtctgtggggaacacacgctcgagcagttgctgcagggccaggcccgtcgcgggcgtggcctcgctaagcttgagcatgacccgGTTGAC‑CT‑GCGCCCTGgcc                                                                                                                                   <  5:234636‑M1/19‑1 (MQ=255)                   gATGCGCAGCCGCCGACGCCGCGTCGGCCTGGCGTTCCAGCCGGCCAGCGCACAGGTGCGCTATCAACCCTTGGGCGTGGTCGGCGTCATCGTGCCGTGGAACTACCCGTTGTTCCTCGCCATCGGCCCGTTGAC‑CT‑GCGCCCTGgccg                                                                                                                                  >  3:63523/1‑149 (MQ=255)                   gATGCGCAGCCGCCGACGCCGCGTCGGCCTGGCGTTCCAGCCGACCAGCGCACAGGTGCGCTATCAACCCTTGGGCGTGGTCGGCGTCATCGTGCCGTGGAACTACCCGTTGTTCCTCGCCATCGGCCCGTTGAC‑CT‑GCGCCCTGgccg                                                                                                                                  >  7:288876/1‑149 (MQ=255)                       cgcAGCCGCCGACGCCGCGTCGGCCTGGCGTTCCAGCCGGCCAGCGCACAGGTGCGCTATCAACCCTTGGGCGTGGTCGGCGTCATCGTGCCGTGGAACTACCCGTTGTTCCTCGCCATCGGCCCGTTGAC‑CT‑GCGCCCTGGccgccg                                                                                                                               <  1:143072/148‑1 (MQ=255)                                     ccgcGTCGGCCTGGCGTTCCAGCCGGCCAGCGCACAGGTGCGCTATCAACCCTTGGGCGTGGTCGGCGTCATCGTGCCGTGGAACTACCCGTTGTTCCTCGCCATCGGCCCGTTGAC‑CT‑GCGCCCTGGCCGCCGG‑CAACCGGGTCATGc                                                                                                               >  2:36746/1‑149 (MQ=255)                                      cgcgTCGGCCTGGCGTTCCAGCCGGCCAGCGCACAGGTGCGCTATCAACCCTTGGGCGTGGTCGGCGTCATCGTGCCGTGGAACTACCCGTTGTTCCTCGCCATCGGCCCGTTGAC‑CT‑GCGCCCTGGCCGCCGG‑CAACCGGGTCATGCt                                                                                                              >  6:314388/1‑149 (MQ=255)                                                  gCGTTCCAGCCGGCCAGCGCACAGGTGCGCTATCAACCCTTGGGCGTGGTCGGCGTCATCGTGCCGTGGAACTACCCGTTGTTCCTCGCCATCGGCCCGTTGAC‑CT‑GCGCCCTGGCCGCCGG‑CAACCGGGTCATGCTCAAGCTTAGc                                                                                                    <  4:63523/147‑1 (MQ=255)                                                   cGTTCCAGCCGGCCAGCGCACAGGTGCGCTATCAACCCTTGGGCGTGGTCGGCGTCATCGTGCCGTGGAACTACCCGTTGTTCCTCGCCATCGGCCCGTTGAC‑CT‑GCGCCCTGGCCGCCGG‑CAACCGGGTCATGCTCAAGCTTAGCGAg                                                                                                 <  3:216544/149‑1 (MQ=255)                                                       ccAGCCGGCCAGCGCACAGGTGCGCTATCAACCCTTGGGCGTGGTCGGCGTCATCGTGCCGTGGAACTACCCGTTGTTCCTCGCCATCGGCCCGTTGAC‑CT‑GCGCCCTGGCCGCCGG‑CAACCGGGTCATGCTCAAGCTTAGCGAGGCCa                                                                                             >  7:191418/1‑149 (MQ=255)                                                          gCCGGCCAGCGCACAGGTGCGCTATCAACCCTTGGGCGTGGTCGGCGTCATCGTGCCGTGGAACTACCCGTTGTTCCTCGCCATCGGCCCGTTGAC‑CT‑GCGCCCTGGCCGCCGG‑CAACCGGGTCATGCTCAAGCTTAGCGAGGCCACGc                                                                                          >  3:266673/1‑149 (MQ=255)                                                                cAGCGCACAGGTGCGCTATCAACCCTTGGGCGTGGTCGGCGTCATCGTGCCGTGGAACTACCCGTTGTTCCTCGCCTTCGGCCCGTTGAC‑CT‑GCGCCCTGGCCGCCGG‑CAACCGGGTCATGCTCAAGCTTAGCGAGGCCACGCCCGCGa                                                                                    >  1:228618/1‑149 (MQ=255)                                                                cAGCGCACAGGTGCGCTATCAACCCTTGGGCGTGGTCGGCGTCATCGTGCCGTGGAACTACCCGTTGTTCCTCGCCATCGGCCCGTTGAC‑CT‑GCGCCCTGGCCGCCGG‑CAACCGGGTCATGCTCAAGCTTAGCGAGGCCACGccc                                                                                        <  3:146642/145‑1 (MQ=255)                                                                cAGCGCACAGGTGCGCTATCAACCCTTGGGCGTGGTCGGCGTCATCGTGCCGTGGAACTACCCGTTGTTCCTCGCCATCGGCCCGTTGAC‑CT‑GCGCCCTGGCCGCCGG‑CAACCGGGTCATGCTCAAGCTTAGCGAGGCCACGccc                                                                                        >  4:146642/1‑145 (MQ=255)                                                                    gcACAGGTGCGCTATCAACCCTTGGGCGTGGTCGGCGTCATCGTGCCGTGGAACTACCCGTTGTTCCTCGCCATCGGCCCGTTGAC‑CT‑GCGCCCTGGCCGCCGG‑CAACCGGGTCATGCTCAAGCTTAGCGAGGCCACGCCCGCGACggg                                                                                <  3:123943/149‑1 (MQ=255)                                                                       gggaacacacgctcgagcagttgctgcagggccaggcccgtcgcgggcgtggcctcgctaagcttgagcatgacccgGTTGAC‑CT‑GCGCCCTGGCCGCCGG‑CAACCggg                                                                                                                     >  1:284153‑M1/78‑109 (MQ=255)                                                                       gggaacacacgctcgagcagttgctgcagggccaggcccgtcgcgggcgtggcctcgctaagcttgagaatgacccgGTTGAC‑CT‑GCGCCCTGGCCGCCGG‑CAACCggg                                                                                                                     <  2:284153‑M1/32‑1 (MQ=255)                                                                          gTGCGCTATCAACCCTTGGGCGTGGTCGGCGTCATCGTGCCGTGGAACTACCCGTTGTTCCTCGCCATCGGCCCGTTGAC‑CT‑GCGCCCTGGCCGCCGG‑CAACCGGGTCATGCTCAAGCTTAGCGAGGc                                                                                               <  3:173326/128‑1 (MQ=255)                                                                          gTGCGCTATCAACCCTTGGGCGTGGTCGGCGTCATCGTGCCGTGGAACTACCCGTTGTTCCTCGCCATCGGCCCGTTGAC‑CT‑GCGCCCTGGCCGCCGG‑CAACCGGGTCATGCTCAAGCTTAGCGAGGc                                                                                               >  4:173326/1‑128 (MQ=255)                                                                             cgcTATCAACCCTTGGGCGTGGTCGGCGTCATCGTGCCGTGGAACTACCCGTTGTTCCTCGCCATCGGCCCGTTGAC‑CT‑GCGCCCTGGCCGCCGG‑CAACCGGGTCATGCTCAAGCTTAGCGAGGCCACGCCCGCGACGGGCCTGGCCCt                                                                       <  4:266673/149‑1 (MQ=255)                                                                             cgcTATCAACCCTTGGGCGTGGTCGGCGTCATCGTGCCGTGGAACTACCCGTTGTTCCTCGCCATCGGCCCGTTGAC‑CT‑GCGCCCTGGCCGCCGG‑CAACCGGGTCATGCTCAAGCTTAGCGAGGCCACGCCCGCGACGGGCCTGGCCCt                                                                       <  4:201834/149‑1 (MQ=255)                                                                               cTATCAACCCTTGGGCGTGGTCGGCGTCATCGTGCCGTGGAACTACCCGTTGTTCCTCGCCATCGGCCCGTTGAC‑CT‑GCGCCCTGGCCGCCGG‑CAACCGGGTCATGCTCAAGCTTATCGAGGCCACGCCCGCGACGGGCCTGGCCCTgc                                                                     <  1:36746/149‑1 (MQ=255)                                                                               cTATCAACCCTTGGGCGTGGTCGGCGTCATCGTGCCGTGGAACTACCCGTTGTTCCTCGCCATCGGCCCGTTGAC‑CT‑GCGCCCTGGCCGCCGG‑CAACCGGGTCATGCTCAAGCTTAGCGAGGCCACGCCCGCGACGGGCCTGGCCCTgc                                                                     <  8:288876/149‑1 (MQ=255)                                                                                  tCAACCCTTGGGCGTGGTCGGCGTCATCGTGCCGTGGAACTACCCGTTGTTCCTCGCCATCGGCCCGTTGAC‑CT‑GCGCCCTGGCCGCCGG‑CAACCGGGTCATGCTCAAGCTTAGCGAGGCCACGCCCGCGACGGGCCTGGCCCTgcag                                                                   >  5:160540/1‑148 (MQ=255)                                                                                   cAACCCTTGGGCGTGGTCGGCGTCATCGTGCCGTGGAACTACCCGTTGTTCCTCGCCATCGGCCCGTTGAC‑CT‑GCGCCCTGGCCGCCGG‑CAACCGGGTCATGCTCAAGCTTAGCGAGGCCACGCCCGCGACGGGCCTGGCCCTgcagc                                                                  >  2:283653/1‑148 (MQ=255)                                                                                     aCCCTTGGGCGTGGTCGGCGTCATCGTGCCGTGGAACTACCCGTTGTTCCTCGCCATCGGCCCGTTGAC‑CT‑GCGCCCTGGCCGCCGG‑CAACCGGGTCATGCTCAAGCTTAGCGAGGCCACGCCCGCGACGGGCCTGGCCCTGCAGCAAc                                                               >  7:2389/1‑149 (MQ=255)                                                                                            ggCGTGGTCGGCGTCATCGTGCCGTGGAACTACCCGTTGTTCCTCGCCATCGGCCCGTTGAC‑CT‑GCGCCCTGGCCGCCGG‑CAACCGGGTCATGCTCAAGCTTAGCGAGGCCACGCCCGCGACGGGCCTGGCCCTGCAGCAACTGCTCGa                                                        <  6:160540/149‑1 (MQ=255)                                                                                              cGTGGTCGGCGTCATCGTGCCGTGGAACTACCCGTTGTTCCTCGCCATCGGCCCGTTGAC‑CT‑GCGCCCTGGCCGCCGG‑CAACCGGGTCATGCTCAAGCTTAGCGAGGCCACGCCCGCGACGGGCCTGGCCCTGCAGCAACTGCTCGAGc                                                      <  1:283653/149‑1 (MQ=255)                                                                                                    cGGCGTCATCGTGCCGTGGAACTACCCGTTGTTCCTCGCCATCGGCCCGTTGACGCT‑GCGCCCTGGCCGCCGG‑CAACCGGGTCATGCTCAAGCTTAGCGAGGCCACGCCCGCGACGGGCCTGGCCCTGCAGCAACTGCTCGAGCgtgtg                                                 >  1:241464/1‑149 (MQ=255)                                                                                                         tcgtCGTGCCGTGGAACTACCCGTTGTTCCTCGCCATCGGCCCGTTGAC‑CT‑GCGCCCTGGCCGCCGG‑CAACCGGGTCATGCTCAAGCTTAGCGAGGCCACGCCCGCGACGGGCCTGGCCCTGCAGCAACTGCTCGAGCGTGTGTTcccc                                           <  3:60006/146‑1 (MQ=255)                                                                                                                         cTACCCGTTGTTCCTCGCCATCGGCCCGTTGAC‑CTGGCGCCCTGGCCGCCGG‑CAACCGGGTCATGCTCAAGCTTAGCGAGGCCACGCCCGCGACGGGCCTGGCCCTGCAGCAACTGCTCGAGCGTGTGTTCCCCACAGACCTGGTCAGc                            >  1:47103/1‑149 (MQ=255)                                                                                                                         cTACCCGTTGTTCCTCGCCATCGGCCCGTTGAC‑CT‑GCGCCCTGGCCGCCGG‑CAACCGGGTCATGCTCAAGCTTAGCGAGGCCACGCCCGCGACGGGCCTGGCCCTGCAGCAACTGCTCGAGCgt                                                    >  5:113312/1‑124 (MQ=255)                                                                                                                         cTACCCGTTGTTCCTCGCCATCGGCCCGTTGAC‑CT‑GCGCCCTGGCCGCCGG‑CAACCGGGTCATGCTCAAGCTTAGCGAGGCCACGCCCGCGACGGGCCTGGCCCTGCAGCAACTGCTCGAGCgt                                                    <  6:113312/124‑1 (MQ=255)                                                                                                                            cccGTTGTTCCTCGCCATCGGCCCGTTGAC‑CT‑GCGCCCTGGCCGCCGG‑CAACCGGGTCATGCTCAAGCTTAGCGAGGCCACGCCCGCGACGGGCCTGGCCCTgca                                                                    <  4:241049/105‑1 (MQ=255)                                                                                                                            cccGTTGTTCCTCGCCATCGGCCCGTTGAC‑CT‑GCGCCCTGGCCGCCGG‑CAACCGGGTCATGCTCAAGCTTAGCGAGGCCACGCCCGCGACGGGCCTGGCCCTgca                                                                    >  3:241049/1‑105 (MQ=255)                                                                                                                             ccGTTGTTCCTCGCCATCGGCCCGTTGAC‑CT‑GCGCCCTGGCCGCCGG‑CAACCGGGTCATGCTCAAGCTTAGCGAGGCCACGCCCGCGACGGGCCTGGCCCTGCAGCAACTGCTCGAGCGTGTGTTCCCCACAGACCTGGTCAGCGTtgt                       >  3:99496/1‑149 (MQ=255)                                                                                                                              cGTTGTTCCTCGCCATCGGCCCGTTGAC‑CT‑GCGCCCTGGCCGCCGG‑CAACCGGGTCATGCTCAAGCTTAGCGAGGCCACGCCCGCGACGGGCCTGGCCCTGCAGCAACTGCTCGAGCGTGTGTTCCCCACAGACCTGGTCAGCGTtgtg                      >  5:128840/1‑149 (MQ=255)                                                                                                                                   ttCCTCGCCATCGGCCCGTTGAC‑CT‑GCGCCCTGGCCGCCGG‑CAACCGGGTCATGCTCAAGCTTAGCGAGGCCACGCCCGCGACGGGCCTGGCCCTGCAGCAACTGCTCGAGCGTGTGTTCCCCACAGACCTGGTCAGCGTTGTGCTCg                  <  5:314388/148‑1 (MQ=255)                                                                                                                                     ccTCGCCATCGGCCCGTTGAC‑CT‑GCGCCCTGGCCGCCGG‑CAACCGGGTCATGCTCAAGCTTAGCGAGGCCACGCCCGCGACGGGCCTGGCCCTGCAGCAACTGCTCGAGCGTGTGTTCCCCACAGACCTGGTCAGCGTTGTGCTCGGt                >  6:101816/1‑148 (MQ=255)                                                                                                                                         gCCATCGGCCCGTTGAC‑CT‑GCGCCCTGGCCGCCGG‑CAACCGGGTCATGCTCAAGCTTAGCGAGGCCACGCCCGCGACGGGCCTGGCCCTGCAGCAACTGCTCGAGCGTGTGTTCCCCACAGACCTGGTCAGCGTTGTGCTCGGTGAgg            <  2:241464/148‑1 (MQ=255)                                                                                                                                         gCCATCGGCCCGTTGAC‑CT‑GCGCCCTGGCCGCCGG‑CAACCGGGTCATGCTCAAGCTTAGCGAGGCCACGCCCGCGACGGGCCTGGCCCTGCAGCAACTGCTCGAGCGTGTGTTCCCCACAGACCTGGTCAGCGTTGTGCTCGGTGAg             <  8:2389/147‑1 (MQ=255)                                                                                                                                          ccATCGGCCCGTTGAC‑CT‑GCGCCCTGGCCGCCGG‑CAACCGGGTCATGCTCAAGCTTAGCGAGGCCACGCCCGCGACGGGCCTGGCCCTGCAGCAACTGCTCGAGCGTGTGTTCCCCACAGACCTGGTCAGCGTTGTGCTCGGTGAGGTc          >  1:273065/1‑149 (MQ=255)                                                                                                                                           catgacccgGTTG‑C‑CG‑GCGGCCAGGGCGCAGGTCAACCGGGTCATGCTCAAGCTTAGCGAGGCCACGCCCGCGACGGGCCTGGCCCTGCAGCAACTGCTCGAGCGTGTGTTCCCCACAGACCTGGTCAGCGTTGTGCTCGGTGAGGTc          <  6:234636‑M1/139‑1 (MQ=255)                                                                                                                                            aTCGGCCCGTTGAC‑CT‑GCGCCCTGGCCGCCGG‑CAACCGGGTCATGCTCAAGCTTAGCGAGGCCACGCCCGCGACGGGCCTGGCCCTGCAGCAACTGCTCGAGCGTGTGTTCCCCACAGACCTGGTCAGCGTTGTGCTCGGTGAGGTc          >  3:132794/1‑147 (MQ=255)                                                                                                                                             tCGGCCCGTTGAC‑CT‑GCGCCCTGGCCGCCGG‑CAACCGGGTCATGCTCAAGCTTAGCGAGGCCACGCCCGCGACGGGCCTGGGCCTGCAGCAACTGCTCGAGCGTGTGTTCCCCACAGACCTGGTCAGCGTTGTGCTCGGTGAGGTCGAg       <  7:112758/149‑1 (MQ=255)                                                                                                                                             tCGGCCCGTTGAC‑CT‑GCGCCCTGGCCGCCGG‑CAACCGGGTCATGCTCAAGCTTAGCGAGGCCACGCCCGCGACGGGCCTGGCCCTGCAGCAACTGCTCGAGCGTGTGTTCCCCACAGACCTGGTCAGCGTTGTGCTCGGTGAGGTCGAg       >  5:89061/1‑149 (MQ=255)                                                                                                                                                  ccGTTGAC‑CT‑GCGCCCTGGCCGCCGG‑CAACCGGGTCATGCTCAAGCTTAGCGAGGCCACGCCCGCGACGGGCCTGGCCCTGCAGCAACTGCTCGAGCGTGTGTTCCCCACAGACCTGGTCAGCGTTGTGCTCGGTGAGGTCGAGGTggg  >  7:50963/1‑149 (MQ=255)                                                                                                                                                    |                                                                                                                                                      AAAGCACTTGCAACGCTGGATGCGCAGCCGCCGACGCCGCGTCGGCCTGGCGTTCCAGCCGGCCAGCGCACAGGTGCGCTATCAACCCTTGGGCGTGGTCGGCGTCATCGTGCCGTGGAACTACCCGTTGTTCCTCGCCATCGGCCCGTTGAC‑CT‑GCGCCCTGGCCGCCGG‑CAACCGGGTCATGCTCAAGCTTAGCGAGGCCACGCCCGCGACGGGCCTGGCCCTGCAGCAACTGCTCGAGCGTGTGTTCCCCACAGACCTGGTCAGCGTTGTGCTCGGTGAGGTCGAGGTGGG  >  NC_002947/5841695‑5841988

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.