New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5972766	52 (1.050)	5 (0.110)	5/244	NT	9.7%	coding (55/288 nt)	PP_5725	hypothetical protein
	?	NC_002947	= 5972791	44 (0.940)					coding (80/288 nt)	PP_5725	hypothetical protein

CTACACGCGGCAGAAGCGCCTCGACGGCAGCGCGGGCGGCAACGTCACGGGCGGTTGGGACCGTATCAACAACAAGAAGTATGCGTGAGGTGCGACCATGTCCGAGGCACGCAGCTTCATTAATTCGCACACGCAGTCATATGATTCGCTGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5972615‑5972766 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgctgaTTGGCCGTCATGGGCGTATCGGCCTTCAGCGAATCATATG  <  NC_002947/5972791‑5972752                                                                                                                                                                                                  CTACACGCGTCAGAAGAGCCTCGACGGCAGCGCGGGCTGCAACGTCACGGGCGGTTGGTACCCTATCAACAACAAGAAGTATGCGTGAGGTGCGACCATGTCCGAGGCACGCAGCTTCATTAATTCGCACACGCAGTCATATGATTCGC                                             <  7:166608/149‑1                GCGCCTCGACGGCAGCGCGGGCGGCAACGTCACGGGCGGTTGGGACCGTATCAACAACAAGAAGTATGCGTGAGGTGCGACCATGTCCGAGGCACGCAGCTTCATTAATTCGCACACGCAGTCATATGATTCGC                                             >  2:48180/1‑134                     TCGACGGCAGCGCGGGCGGCAACGTCACGGGCGGTTGGGACCGTATCAACAACAAGAAGTATGCGTGAGGTGCGACCATGTCCGAGGCACGCAGCTTCATTAATTCGCACACGCAGTCATATGATTCGCTGATTGGCCGTCATGGGCG                          >  8:29276/1‑148                               CGCGGGCGGCAACGTCACGGGCGGTTGGGACCGTATCAACAACAAGAAGTATGCGGGAGGTGCGACCATGTCCGAGGCACGCAGCTTCATTAATTCGCACACGCAGTCATATGATTCGCTGA‑AGGCCGGCATGGGCGTATCGGCCTTCA              <  4:304065/149‑1                                     CGGCAACGTCACGGGCGGTTGGGACCGTATCAACAACAAGAAGTATGCGTGAGGTGCGACCATGTCCGAGGCACGCAGCTTCATTAATTCGCACACGCAGTCATATGATTCGCTGATTGGCCGTCATGGGCGTATCGGCCTTCAGCGAA         <  7:29276/149‑1                                         AACGTCACGGGCGGTTGGGACCGTATCAACAACAAGAAGTATGCGTGAGGTGCGACCATGTCCGAGGCACGCAGCTTCATTAATTCGCACACGCAGTCATATGATTCGCTGATTGGCCGTCATGGGCGTATCGGCCTTCAGCGAATCAT     <  2:249197/149‑1                                            GTCACGGGCGGTTGGGACCGTATCAACAACAAGAAGTATGCGTGAGGTGCGACCATGTCCGAGGCACGCAGCTTCATTAATTCGCACACGCAGTCATATGATTCGCTGATTGGCCGTCATGGGCGTATCGGCCTTCAGCGAATCATATG  <  1:127092/149‑1                                                                                                                                                                                                  CTACACGCGGCAGAAGCGCCTCGACGGCAGCGCGGGCGGCAACGTCACGGGCGGTTGGGACCGTATCAACAACAAGAAGTATGCGTGAGGTGCGACCATGTCCGAGGCACGCAGCTTCATTAATTCGCACACGCAGTCATATGATTCGCTGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5972615‑5972766 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgctgaTTGGCCGTCATGGGCGTATCGGCCTTCAGCGAATCATATG  <  NC_002947/5972791‑5972752

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.