New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5972766	52 (1.050)	5 (0.110)	5/244	NT	9.7%	coding (55/288 nt)	PP_5725	hypothetical protein
	?	NC_002947	= 5972791	44 (0.940)					coding (80/288 nt)	PP_5725	hypothetical protein

GCGGCAACGTCACGGGCGGTTGGGACCGTATCAACAACAAGAAGTATGCGTGAGGTGCGACCATGTCCGAGGCACGCAGCTTCATTAATTCGCACACGCAGTCATATGATTCGCTGAAGGCCGATACGCCCATGACGGCCAATCAGCGCGGCAAGTTTGATGTGTTGAATGCGCATATCGTCAATAGTGTGGTGGTAGGTGGTGAACTGGTTATTGTAGGTGATCCAACCACGCCCTCCTGTACAAGTCATGAAGAATTTTTAATGTCTCAGGCAG  >  NC_002947/5972650‑5972925                                                                                                                                              |                                                                                                                                       gcggcAACGTCACGGGCGGTTGGGACCGTATCAACAACAAGAAGTATGCGTGAGGTGCGACCATGTCCGAGGCACGCAGCTTCATTAATTCGCACACGCAGTCATATGATTCGCTGAAGGCCGATACGCCCATGACGGCCAATCAgcgc                                                                                                                                 >  4:84469/1‑149 (MQ=255)              gggCGGTTGGGACCGTATCAACAACAAGAAGTATGCGTGAGGTGCGACCATGTCCGAGGCACGCAGCTTCATTAATTCGCACACGCAGTCATATGATTCGCTGAAGGCCGATACGCCCATGACGGCCAATCAGCGCGGCAAGTTTGAtg                                                                                                                    >  1:193981/1‑149 (MQ=255)                 cGGTTGGGACCGTATCAACAACAAGAAGTATGCGTGAGGTGCGACCATGTCCGAGGCACGCAGCTTCATTAATTCGCACACGCAGTCATATGATTCGCTGAAGGCCGATACGCCCATGACGGCCAATCAGCGCGGCAAGTTTGATgtgt                                                                                                                 <  7:122960/149‑1 (MQ=255)                       ggACCGTATCAACAACAAGAAGTATGCGTGAGGTGCGACCATGTCCGAGGCACGCAGCTTCATTAATTCGCACACGCAGTCATATGATTCGCTGAAGGCCGATACGCCCATGACGGCCAATCAgcgc                                                                                                                                 >  4:114002/1‑127 (MQ=255)                       ggACCGTATCAACAACAAGAAGTATGCGTGAGGTGCGACCATGTCCGAGGCACGCAGCTTCATTAATTCGCACACGCAGTCATATGATTCGCTGAAGGCCGATACGCCCATGACGGCCAATCAgcgc                                                                                                                                 <  3:114002/127‑1 (MQ=255)                       ggACCGTATCAACAACAAGAAGTATGCGTGAGGTGCGACCATGTCCGAGGCACGCAGCTTCATTAATTCGCACACGCAGTCATATGATTCGCTGAAGGCCGATACGCCCATGACGGCCAATCAGCGCGGCAAGTTTGATGTGTTGAATg                                                                                                           >  8:61445/1‑149 (MQ=255)                          ccGTATCAACAACAAGAAGTATGCGTGAGGTGCGACCATGTCCGAGGCACGCAGCTTCATTAATTCGCACACGCAGTCATATGATTCGCTGAAGGCCGATACGCCCATGACGGCCAATCAGCGCGGCAAGTTTGATGTGTTGAATgcgc                                                                                                        <  3:93651/149‑1 (MQ=255)                               tCAACACCCAGAAGTATGCGGGAGGTGCGACCATGTCCGAGGCACGCAGCTTCATTAATTCGCACACGCAGTCATATGATTCGCTGAAGGCCGATACGCCCATGACGGCCAATCAGCGCGGCAAGTTTGATGTGTTGAATGCGCATATc                                                                                                   <  4:222394/149‑1 (MQ=255)                                caacaacaaGAAGTATGCGTGAGGTGCGACCATGTCCGAGGCACGCAGCTTCATTAATTCGCACACGCAGTCATATGATTCGCTGAAGGCCGATACGCCCATGACGGCCAATCAGCGCGGCAAGTTTGATGTGTTGAATGCGCATATCg                                                                                                  >  3:102035/1‑149 (MQ=255)                                 aacaacaaGAAGTATGCGTGAGGTGCGACCATGTCCGAGGCACGCAGCTTCATTAATTCGCACACGCAGTCATATGATTCGCTGAAGGCCGATACGCCCATGACGGCCAATCAGCGCGGCAAGTTTGATGTGTTGAATGCGCATATCGt                                                                                                 >  3:92764/1‑149 (MQ=255)                                      caaGAAGTATGCGTGAGGTGCGACCATGTCCGAGGCACGCAGCTTCATTAATTCGCACACGCAGTCATATGATTCGCTGAAGGCCGATACGCCCATGACGGCCAATCAGCGCGGCAAGTTTGATGTGTTGAATGCGCATATCGTCAAt                                                                                             >  2:113105/1‑148 (MQ=255)                                      caaGAAGTATGCGTGAGGTGCGACCATGTCCGAGGCACGCAGCTTCATTAATTCGCACACGCAGTCATATGATTCGCTGAAGGCCGATACGCCCATGACGGCCAATCAGCGCGGCAAGTTTGATGTGTTGAATGCGCATATCGTCAATa                                                                                            <  1:113105/149‑1 (MQ=255)                                      caaGAAGGCTGCGTGAGGTGCGACCATCTCCGAGGCACGCAGCTTCATTAATTCGCACACGCAGTCATATGATTCGCTGAAGGCCGATACGCCCATGACGGCCAATCAGCGCGGCAAGTTTGATGTGTTGAATGCGCATATCGTCAATa                                                                                            <  6:281506/149‑1 (MQ=255)                                       aagaagTATGCGTGAGGTGCGACCATGTCCGAGGCACGCAGCTTCATTAATTCGCACACGCAGTCATATGATTCGCTGAAGGCCGATACGCCCATGACGGCCAATCAGCGCGGCAAGTTTGATGTGTTGAATGCGCATATCGTCAATAg                                                                                           >  5:127212/1‑149 (MQ=255)                                           agTATGCGTGAGGTGCGACCATGTCCGAGGCACGCAGCTTCATTAATTCGCACACGCAGTCATATGATTCGCTGAAGGCCGATACGCCCATGACGGCCAATCAGCGCGGCAAGTTTGATGTGTTGAATGCGCATATCGTCAATAGtgtg                                                                                       <  4:102035/149‑1 (MQ=255)                                           agTATGCGTGAGGTGCGACCATGTCCGAGGCACGCAGCTTCATTAATTCGCACACGCAGTCATATGATTCGCTGAAGGCCGATACGCCCATGACGGCCAATCAGCGCGGCAAGTTTGATGTGTTGAATGCGCATATCGTCAATAGtgtg                                                                                       <  8:11830/149‑1 (MQ=255)                                              aTGCGTGAGGTGCGACCATGTCCGAGGCACGCAGCTTCATTAATTCGCACACGCAGTCATATGATTCGCTGAAGGCCGATACGCCCATGACGGCCAATCAGCGCGGCAAGTTTGATGTGTTGAATGCGCATATCGTCAATAGTgtggtg                                                                                    >  8:274306/1‑149 (MQ=255)                                                  gTGAGGTGCGACCATGTCCGAGGCACGCAGCTTCATTAATTCGCACACGCAGTCATATGATTCGCTGAAGGCCGATACGCCCATGTCGGCCAATCAGCGCTGCAAGTTTGATGTGTTGAATGCGCATATCGTCAATAGTGTggtggt                                                                                  <  1:26848/147‑1 (MQ=255)                                                  gTGAGGTGCGAAAAAGTCCGAGGCACGCAGCTTCATTAATTCGCACACGCAGTCATATGATTCGCTGAAGGCCGATACGCACATCACGGCCAATCAGCGCGGCAAGATTGATGTGTTGAATGCGCATATCGTCAAAAGTGTggtggt                                                                                  >  2:26848/1‑147 (MQ=255)                                                            aCCATGTCCGAGGCACGCAGCTTCATTAATTCGCACACGCAGTCATATGATTCGCTGAAGGCCGATACGCCCATGACGGCCAATCAGCGCGGCAAGTTTGATGTGTTGAATGCGCATATCGTCAATAGTGTGGTGGTAGGTGGTGAACt                                                                      >  3:77825/1‑149 (MQ=255)                                                                  tCCGAGGCACGCAGCTTCATTAATTCGCACACGCAGTCATATGATTCGCTGAAGGCCGATACGCCCATGACGGCCAATCAGCGCGGCAAGTTTGATGTGTTGAATGCGCATATCGTCAATAGTGTGGTGGTAGGTGGTGAACTGGTTa                                                                 <  4:77825/148‑1 (MQ=255)                                                                    cGAGGCACGCAGCTTCATTAATTCGCACACGCAGTCATATGATTCGCTGAAGGCCGATACGCCCATGACGGCCAATCAGCGCGGCAAGTTTGATGTGTTGAATgcgc                                                                                                        <  6:112516/107‑1 (MQ=255)                                                                    cGAGGCACGCAGCTTCATTAATTCGCACACGCAGTCATATGATTCGCTGAAGGCCGATACGCCCATGACGGCCAATCAGCGCGGCAAGTTTGATGTGTTGAATgcgc                                                                                                        >  5:112516/1‑107 (MQ=255)                                                                    cGAGGCACGCAGCTTCATTAATTCGCACACGCAGTCATATGATTCGCTGAAGGCCGATACGCCCATGACGGCCAATCAGCGCGGCAAGTTTGATGTGTTGAATGCGCATATCGTCAATAGTGTGGTGGTAGGTGGTGAACTGGTTATTg                                                              <  7:61445/149‑1 (MQ=255)                                                                     gAGGCACGCAGCTTCATTAATTCGCACACGCAGTCATATGATTCGCTGAAGGCCGATACGCCCATGACGGCCAATCAGCGCGGCAAGTTTGATGTGTTGAATGCGCATATCGTCAATAGTGTGGTGGTAGGTGGTGAACTGGTTATTGt                                                             <  5:229482/149‑1 (MQ=255)                                                                       ggCACGCAGCTTCATTAATTCGCACACGCAGTCATATGATTCGCTGAAGGCCGATACGCCCATGACGGCCAATCAGCGCGGCAAGTTTGATGTGTTGAATGCGCATATCGTCAATAGTGTGGTGGTAGGTGGTGAACTGGTTATTGTAg                                                           <  7:274306/149‑1 (MQ=255)                                                                         cACGCAGCTTCATTAATTCGCACACGCAGTCATATGATTCGCTGAAGGCCGATACGCCCATGACGGCCAATCAGCGCGGCAAGTTTGATGTGTTGAATGCGCATATCGTCAATAGTGTGGTGGTAGGTGGTGAACTGGTTATTGTAGGt                                                         <  6:127212/149‑1 (MQ=255)                                                                              aGCTTCATTAATTCGCACACGCAGTCATATGATTCGCTGAAGGCCGATACGCCCATGACGGCCAATCAGCGCGGCAAGTTTGATGTGTTGAATGCGCATATCGTCAATAGTGTGGTGGTAGGTGGTGAACTGGTTATTGTAGGTGATcc                                                    <  3:84469/149‑1 (MQ=255)                                                                                    aTTAATTCGCACACGCAGTCATATGATTCGCTGAAGGCCGATACGCCCATGACGGCCAATCAGCGCGGCAAGTTTGATGTGTTGAATGCGCATATCGTCAATAGTGTGGTGGTAGGTGGTGATCTGGTTATTGTAGGTGATCAAACCAc                                              >  4:108086/1‑149 (MQ=255)                                                                                     ttAATTCGCACACGCAGTCATATGATTCGCTGAAGGCCGATACGCCCATGACGGCCAATCAGCGCGGCAAGTTTGATGTGTTGAATGCGCATATCGTCAATAGTGTGGTGGTAGGTGGTGAACTGGTTATTGTAGGTGATCCAAc                                                 >  5:85514/1‑145 (MQ=255)                                                                                     ttAATTCGCACACGCAGTCATATGATTCGCTGAAGGCCGATACGCCCATGACGGCCAATCAGCGCGGCAAGTTTGATGTGTTGAATGCGCATATCGTCAATAGTGTGGTGGTAGGTGGTGAACTGGTTATTGTAGGTGATCCAAc                                                 <  6:85514/145‑1 (MQ=255)                                                                                        aTTCGCACACGCAGTCATATGATTCGCTGAAGGCCGATACGCCCATGACGGCCAATCAGCGCGGCAAGTTTGATGTGTTGAATgcgc                                                                                                        <  2:123695/87‑1 (MQ=255)                                                                                        aTTCGCACACGCAGTCATATGATTCGCTGAAGGCCGATACGCCCATGACGGCCAATCAGCGCGGCAAGTTTGATGTGTTGAATgcgc                                                                                                        >  1:123695/1‑87 (MQ=255)                                                                                        aTTCGCACACGCAGTCATATGATTCGCTGAAGGCCGATACGCCCATGACGGCCAATCAGCGCGGCAAGTTTGATGTGTTGAATGCGCATATCGTCAATAGTGTGGTGGTAGGTGGTGAACTGGTTATTGTAGGTGATCCAACCACGccc                                          >  3:30536/1‑149 (MQ=255)                                                                                           cGCACACGCAGTCATATGATTCGCTGAAGGCCGATACGCCCATGACGGCCAATCAGCGCGGCAAGTTTGATGTGTTGAATGCGCATATCGTCAATAGTGTGGTGGTAGGTGGTGAACTGGTTATTGTAGGTGATCCAACCACGCcctc                                        <  2:98242/148‑1 (MQ=255)                                                                                             cacaCGCAGTCATATGATTCGCTGAAGGCCGATACGCCCATGACGGCCAATCAGCGCGGCAAGTTTGATGTGTTGAATGCGCATATCGTCAATAGTGTGGTGGTAGGTGGTGAACTGGTTATTGTAGGTGATCCAACCACGCCCTCCTg                                     >  7:197044/1‑149 (MQ=255)                                                                                                       cATATGATTCGCTGAAGGCCGATACGCCCATGACGGCCAAtcagcgaatcatatgactgcgtgtgcgaattaatgaagctgcgtgcctcggacatggtcgcacctcacgcatacttcttgttgttgatacggtcccaaccgcccgtgac                           <  1:127092‑M2/149‑110 (MQ=255)                                                                                                         tatGATTCGCTGAAGGCCGATACGCCCATGACGGCCAATCAGCGCGGCAAGTTTGATGTGTTGAATGCGCATATCGTCAATAGTGTGGTGGTAGGTGGTGAACTGGTTATTGTAGGTGATCCAACCACGCCCTCCTGTACAAGTCATg                          >  6:251268/1‑148 (MQ=255)                                                                                                          atGATTCGCTGAAGGCCGATACGCCCATGACGGCCAAtcagcgaatcatatgactgcgtgtgcgaattaatgaagctgcgtgcctcggacatggtcgcacctcacgcatacttcttgttgttgatacggtcccaaccgcccgtgacgtt                        <  2:249197‑M2/149‑113 (MQ=255)                                                                                                          atGATTCGCTGAAGGCCGATACGCCCATGACGGCCAATCAGCGCGGCAAGTTTGATGTGTTGAATGCGCATATCGTCAATAGTGTGGTGGTAGGTGGTGAACTGGTTATTGTAGGTGATCCAACCACGCcctc                                        >  4:205370/1‑133 (MQ=255)                                                                                                          atGATTCGCTGAAGGCCGATACGCCCATGACGGCCAATCAGCGCGGCAAGTTTGATGTGTTGAATGCGCATATCGTCAATAGTGTGGTGGTAGGTGGTGAACTGGTTATTGTAGGTGATCCAACCACGCcctc                                        <  3:205370/133‑1 (MQ=255)                                                                                                            gATTCGCTGAAGGCCGATACGCCCATGACGGCCAATCAGCGCGGCAAGTTTGATGTGTTGAATGCGCATATCGTCAATAGTGTGGTGGTAGGTGGTGAACTGGTTATTGTAGGTGATCCAACCACGCCCTCCTGTAGAAGTCATg                          >  1:130584/1‑145 (MQ=255)                                                                                                              ttCGCTGAAGGCCGATACGCCCATGACGGCCAAtcagcgaatcatatgactgcgtgtgcgaattaatgaagctgcgtgcctcggacatggtcgcacctcacgcatacttcttgttgttgatacggtcccaaccgcccgtgacgttgccg                    <  7:29276‑M2/149‑117 (MQ=255)                                                                                                              ttCGCTGAAGGCCGATACGCCCATGACGGCCAATCAGCGCGGCAAGTTTGATGTGTTGAATGCGCATATCGTCAATAGTGTGGTGGTAGGTGGTGAACTGGTTATTGTAGGTGATCCAACCACGCACTCCTGTACAAGTCATGAAGAAt                    >  8:196938/1‑149 (MQ=255)                                                                                                                 gCTTAAGGCCGTTACGCCCATGACGGCCAATCAGCGCGGCAAGTTTTATGTGTTGAATGCGCATATCGTCAATAGTGTGGTGGTAGGTGGTGAACTGGTTATTGTAGGTGATCCAACCACGCCCTCCTGTACAAGTCATGAAGAAtttt                 <  8:197044/149‑1 (MQ=255)                                                                                                                  cTGAAGGCCGATACGCCCATGACGGCCAATCAGCGCGGCAAGTTTGATGTGTTGAATGCGCATATCGTCTATAGTGTGGTGGTAGGTGGTGAACTGGTTATTGTAGGTGATCCAACCACGCCCTCCTGTACAAGTCATGAAGAAtttt                 >  3:209748/1‑148 (MQ=255)                                                                                                                   tGAAGGCCGATACGCCCATGCCGGCCTcagcgaatcatatgactgcgtgtgcgaattaatgaagctgcgtgcctcggacatggtcgcacctcccgcatacttcttgttgttgatacggtcccaaccgcccgtgacgttgccgcccgcg                <  4:304065‑M2/149‑122 (MQ=255)                                                                                                                       ggCCGATACGCCCATGACGGCCAATCAGCGCGGCAAGTTTGATGTGTTGAATGCGCATATCGTCAATAGTGTGGTGGTAGGTGGTGAACTGGTTATTGTAGGTGATCCAACCACGCCCTCCTGTACAAGTCATGAAGAATTTTTAATGt           <  7:196938/149‑1 (MQ=255)                                                                                                                               cGCCCATGACGGCCAAtcagcgaatcatatgactgcgtgtgcgaattaatgaagctgcgtgcctcggacatggtcgcacctcacgcatacttcttgttgttgatacggtcccaaccgcccgtgacgttgccgcccgcgctgccgtcga    >  8:29276‑M2/1‑16 (MQ=255)                                                                                                                                  ccATGACGGCCAATGAGCGGGGCAAGTTTGTTGTGTTGAATGCGCATATCGTCAATAGTGTGGTGTTAGGTGGTGTACTGGTTTTTGTAGGTGATCCTAGGACGCCCTCCTGTACAAGTCATGAAGAATTTTTaa              <  7:163987/135‑1 (MQ=255)                                                                                                                                  ccATGACGGCCAATCAGCGCGGCAAGTTTGATGTGTTGAATGCGCATATCGTCAATAGTGTGGTGGTAGGTGGTGAACTGGTTATTGTAGGTGATCCAACCACGCCCTCCTGTACAAGTCATGAAGAATTTTTAATGTCTCAGGCAg  >  5:98893/1‑147 (MQ=255)                                                                                                                                  ccATGACGGCCAATCAGCGCGGCAAGTTTGATGTGTTGAATGCGCATATCGTCAATAGTGTGGTGGTAGGTGCTGAACTGGTTATTGTAGGTGATCCAACCACGCCCTCCTGTACAAGTCATGAAGAATTTTTaa              >  8:163987/1‑135 (MQ=255)                                                                                                                                            cAATCAGCGCGGCAAGTTTGATGTGTTGAATGCGCATATCGTCAATAGTGTGGTGGTAGGTGGTGAACTGGTTATTGTAGGTGATCCAACCACGcc                                           >  6:176940/1‑96 (MQ=255)                                                                                                                                            cAATCAGCGCGGCAAGTTTGATGTGTTGAATGCGCATATCGTCAATAGTGTGGTGGTAGGTGGTGAACTGGTTATTGTAGGTGATCCAACCACGcc                                           <  5:176940/96‑1 (MQ=255)                                                                                                                                              |                                                                                                                                       GCGGCAACGTCACGGGCGGTTGGGACCGTATCAACAACAAGAAGTATGCGTGAGGTGCGACCATGTCCGAGGCACGCAGCTTCATTAATTCGCACACGCAGTCATATGATTCGCTGAAGGCCGATACGCCCATGACGGCCAATCAGCGCGGCAAGTTTGATGTGTTGAATGCGCATATCGTCAATAGTGTGGTGGTAGGTGGTGAACTGGTTATTGTAGGTGATCCAACCACGCCCTCCTGTACAAGTCATGAAGAATTTTTAATGTCTCAGGCAG  >  NC_002947/5972650‑5972925

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.