New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	6019248 =	75 (1.520)	5 (0.120)	5/210	NT	9.2%	intergenic (‑49/+96)	dadX/dadA‑II	alanine racemase/D‑amino acid:quinone oxidoreductase
	?	NC_002947	6019324 =	37 (0.910)					intergenic (‑125/+20)	dadX/dadA‑II	alanine racemase/D‑amino acid:quinone oxidoreductase

CTCCCGTTATGGCAATAGCCGGGAAGTGGCCAAGCACGGGCAAAGCGC‑GCCGGCTCACCAGCAGTAACAGCCTGTGCCGGCCCATTTGCGGGCTTGCCCGCTCCCACAGGAACACCACCGCTTTTGAAAGCTGTGCACGACCTGTGGGAGCGGGCAAGCCCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/6019410‑6019248 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cctgtgggagcgggcaagcccgcAAATGGGCCGGCACAGGCTGTTACTGCTGGTGAGCCGGCGCGCTTTGCCCGTGCTTGGCCACTTCCCGGCTATTGCCATAACGGGAGATATCCAGGCCTTCGGCACTGATCTGCGGCTTCTTGCGCGCAATCAGGTC  >  NC_002947/6019324‑6019460                                                                                                                                                                                                                                                                                                               CTCCCGTTATGGCAATAGCCGGGAAGTGGCCAAGCACGGGCAAAGCGC‑GCCGGCTCACCAGCAGTAACAGCCTGTGCCGGCCCATTTGCGGGCTTGCCCGCTCCCACAGGAACACCACCGCTTTTGAAAGCTGTGCACGACCTGTGG                                                                                                                                                           >  3:172215/1‑147  TCCCGTTATGGCAATAGCCGGGAAGTGGCCAAGCACGGGCAAAGCGCGGCCGGCTCACCAGCAGTAACAGCCTGTGCCGGCCCATTTGCGGGCTTGCCCGCTCCCACAGGAACACCACCGCTTTTGAAAGCTGTGCACGACCTGTGG                                                                                                                                                           >  1:233464/1‑147             CAATAGCCGGGAAGTGGCCAAGCACGGGCAAAGCGC‑GCCGGCTCACCAGCAGTAACAGCCTGTGCCGGCCCATTTGCGGGCTTGCCCGCTCCCACAGGAACACCACCGCTTTTGAAAGCTGTGCACGACCTGTGGGAGCGGGCAAGCCC                                                                                                                                             <  2:233464/149‑1              AATAGCCGGGAAGTGGCCAAGCACGGGCAAAGCGC‑GCCGGCTCACCAGCAGTAACAGCCTGTGCCGGCCCATTTGCGGGCTTGCCCGCTCCCACAGGAACACCACCGCTTTTGAAAGCTGTGCACGACCTGTGGGAGCGGGCAAGCCCG                                                                                                                                            >  8:181156/1‑149              AATAGACGGGAAGTGGCCAAGCACGGGCAAAGCGC‑GCCGGCTCACCAGCACTAACAGCCTGTGCCGGCCCATTTGCGGCCTTGCCCGCTCACACAGTAACAAAACCGCTTTAGAAAGCTGTGCACGACCTGTCGGAGCGGGCAAGCCCG                                                                                                                                            >  8:238558/1‑149                    CGGGAAGTGGCAAAGCACGGGCAAAGCGC‑GCCGGCTCACCAGCAGTAACAGCCTGTGCCGGCCCATTTGCGGGCTTGCCCGCTCCCACAGGAACACCACCGCTTTTGAAAGCTGTGCACGACCTGTGG                                                                                                                                                           <  5:32553/128‑1                             GCCAAGCACGGGCAAAGCGC‑GCCGGCTCACCAGCAGTAACAGCCTGTGCCGGCCCATTTGCGGGCTTGCCCGCTCCCACAGGAACACCACCGCTTTTGAAAGCTGTGCACGACCTGTGGGAGCGGGCAAGC                                                                                                                                               <  7:338/131‑1                                                     GGCTCACCAGCAGTAACAGCCTGTGCCGGCCCATTTGCGGGCTTGCCCGCTCCCACAGGAACACCACCGCTTTTGAAAGCTGTGCACGACCTGTGGGAGCGG                                                                                                                                                     <  2:111330/102‑1                                                     GGCTCACCAGCAGTAACAGCCTGTGCCGGCCCATTTGCGGGCTTGCCCGCTCCCACAGGAACACCACCGCTTTTGAAAGCTGTGCACGACCTGTGGGAGCGG                                                                                                                                                     >  1:111330/1‑102                                                                                               TTGCCCGCTCCCACAGGAACACCACCGCTTTTGAAAGCTGTGCACGACCTGTGGGAGCGGGCAAGCCCGCAAATGGGCCGGCACAGGCTGTTACTGCTGGTGAGCCGGCGCGCTTTGCC                                                                                          >  7:169801/1‑119                                                                                               TTGCCCGCTCCCACAGGAACACCACCGCTTTTGAAAGCTGTGCACGACCTGTGGGAGCGGGCAAGCCCGCAAATGGGCCGGCACAGGCTGTTACTGCTGGTGAGCCGGCGCGCTTTGCC                                                                                          <  8:169801/119‑1                                                                                                       TCCCACAGGAACACCACCGCTTTTGAAAGCTGTGCACGACCTGTGGGAGCGGGCAAGCCCGCAAATGGGCCGGCACAGGCTGTTACTGCTGGTGAGCCGGCGCGCTTTGCCCGTGCTTGGCCACTTCCCGGCTATTGCCATAACGG                                                       >  2:38519/1‑146                                                                                                         CCACAGGAACACCACCGCTTTTGAAAGCTGTGCACGACCTGTGGGAGCGGGCAAGCCCGCAAATGGGCCGGCACAGGCTGTTACTGCTGGTGAGCCGGCGCGCTTTG                                                                                            <  2:25389/107‑1                                                                                                         CCACAGGAACACCACCGCTTTTGAAAGCTGTGCACGACCTGTGGGAGCGGGCAAGCCCGCAAATGGGCCGGCACAGGCTGTTACTGCTGGTGAGCCGGCGCGCTTTG                                                                                            >  1:25389/1‑107                                                                                                                                               CTGTGGGAGCGGGCAAGCCCGCAAATGGGCCGGCACAGGCTGTTACTGCTGGTGAGCCGGCGCGCTTTGCCCGTGCTTGGCCACTTCCCGGCTATTGCCATAACGGGA                                                     <  2:182026/108‑1                                                                                                                                               CTGTGGGAGCGGGCAAGCCCGCAAATGGGCCGGCACAGGCTGTTACTGCTGGTGAGCCGGCGCGCTTTGCCCGTGCTTGGCCACTTCCCGGCTATTGCCATAACGGGA                                                     >  1:182026/1‑108                                                                                                                                                    GGAGCGGGCAAGCCCGCAAATGGGCCGGCACAGGCTGTTACTGCTGGTGAGCCGGCGCGCTTTGCCCGTGCTTGGCCACTTCCCGGCTATTGCCATAACGGGAGATATCCAGGCCTTCGGCACTGATCTGCGGCTTCTTGCGCGCAATC       <  4:145208/149‑1                                                                                                                                                      AGCGGGCAAGCCCGCAAATGGGCCGGCACAGGCTGTTACTGCTGGTGAGCCGGCGCGCTTTGCCCGTGCTTGGCCACTTCCCGGCTATTGCCATAACGGGAGATATCCAGGCCTTCGGCACTGATCTGCGGCTTCTTGCGCGCAATCAG     >  8:10295/1‑149                                                                                                                                                         GGGCAAGCCCGCAAATGGGCCGGCACAGGCTGTTACTGCTGGTGAGCCGGCGCGCTTTGCCCGTGCTTGGCCACTTCCCGGCTATTGCCATAACGGGAGATATCCAGGCCTTCGGCACTGATCTGCGGCTTCTTGCGCGCAATCAGGTC  >  3:84424/1‑149                                                                                                                                                                                                                                                                                                               CTCCCGTTATGGCAATAGCCGGGAAGTGGCCAAGCACGGGCAAAGCGC‑GCCGGCTCACCAGCAGTAACAGCCTGTGCCGGCCCATTTGCGGGCTTGCCCGCTCCCACAGGAACACCACCGCTTTTGAAAGCTGTGCACGACCTGTGGGAGCGGGCAAGCCCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/6019410‑6019248 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cctgtgggagcgggcaagcccgcAAATGGGCCGGCACAGGCTGTTACTGCTGGTGAGCCGGCGCGCTTTGCCCGTGCTTGGCCACTTCCCGGCTATTGCCATAACGGGAGATATCCAGGCCTTCGGCACTGATCTGCGGCTTCTTGCGCGCAATCAGGTC  >  NC_002947/6019324‑6019460

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.