New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 71964 = | 59 (1.200) | 3 (0.060) | 3/248 | NT | 5.3% | coding (885/948 nt) | glyQ | glycine‑tRNA ligase subunit alpha |
? | NC_002947 | 72012 = | 50 (1.050) | coding (837/948 nt) | glyQ | glycine‑tRNA ligase subunit alpha |
GCCAGGAAGGCGTCGCCAAGGCTGGCGAGGGCCTTGGGTGGCAGCTCTTCGGTGCCCAGTTCTACCAGGAAATCTTGAGCACTCATTGTGCAGCCTCCAGCTTAGCCAACACTTCGTCACGCAGTTCAGGGGTGGCCATCGGGAAGCCCAGGCGTGCGCGGGCTTGCAGATAGCTTTGCGCCACGTCCCGGGCCAGGGTACGTACACGCAGGATGTAACGCTGGCGCTCGGTTACCGAGATGGCGCGGCGGGCGTCCAGCAGGTTGAAGGTATGCGAT > NC_002947/71819‑72096 | agccaaccgcctgatcaagctggagctgccgctgccgacctatgaaatggtcctgaaggcatcgcataccttcaacctgctggacgcccgccgcgccatctcggtaaccgagcgccagcgttacatcctgcgtgtacgtaccctgGccc < 1:204967‑M1/4‑1 (MQ=255) aGGAAGGCGTCGCCAAGGCTGGCGAGGGCCTTGGGTGGCAGCTCTTCGGTGCCCAGTTCTACCAGGAAATCTTGAGCACTCATTGTGCAGCCTCCAGCTTAGCCAACACTTCGTCACGCAGTTCAGGGGTGGCCATCGGGAAGCCCAgg > 6:70879/1‑149 (MQ=255) ggAAGGCGTCGCCAAGGCTGGCGAGGGCCTTGGGTGGCAGCTCTTCGGTGCCCAGTTCTACCAGGAAATCTTGAGCACTCATTGTGCAGCCTCCAGCTTAGCCAACACTTCGTCACGCAGTTCAGGGGTGGCCATCGGGAAGCCCAGGc < 7:134929/149‑1 (MQ=255) gCGTCGCCAAGGCTGGCGAGGGCCTTGGGTGGCAGCTCTTCGGTGCCCAGTTCTACCAGGAAATCTTGAGCACTCATTGTGCAGCCTCCAGCTTAGCCAACACTTCGTCACGCAGTTCAGGGGTGGCCATCGGGAAGCCCAGGCGTgcg > 6:324298/1‑149 (MQ=255) gTCGCCAAGGCTGGCGAGGGCCTTGGGTGGCAGCTCTTCGGTGCCCAGTTCTACCAGGAAATCTTGAGCACTCATTGTGCAGCCTCCAGCTTAGCCAACACTTCGTCACGCAGTTCAGGGGTGGCCATCGGGAAGCCCAGGCGTGcgcg > 7:102192/1‑149 (MQ=255) tCGCCAAGGCTGGCGAGGGCCTTGGGTGGCAGCTCTTCGGTGCCCAGTTCTACCAGGAAATCTTGAGCACTCATTGTGCAGCCTCCAGCTTAGCCAACACTTCGTCACGCAGTTCAGGGGTGGCCATCGGGAAGCCCAGGCGTGCGCgg > 7:271154/1‑149 (MQ=255) aGGCTGGCGAGGGCCTTGGGTGGCAGCTCTTCGGTGCCCAGTTCTACCAGGAAATCTTGAGCACTCATTGTGCAGCCTCCAGCTTAGCCAACACTTCGTCACGCAGTTCAGGGGTGGCCATCGGGAAGCCCAGGCGTGCGCGGGCTTGc < 8:271154/149‑1 (MQ=255) aGGCTGGCGAGGGCCTTGGGTGGCAGCTCTTCGGTGCCCAGTTCTACCAGGAAATCTTGAGCACTCATTGTGCAGCCTCCAGCTTAGCCAACACTTCGTCACGCAGTTCAGGGGTGGCCATCGGGAAGCCCAGGCGTGCGCGGGCTTGc < 1:23613/149‑1 (MQ=255) ggCTGGCGAGGGCCTTGGGTGGCAGCTCTTCGGTGCCCAGTTCTACCAGGAAATCTTGAGCACTCATTGTGCAGCCTCCAGCTTAGCCAACACTTCGTCACGCAGTTCAGGGGTGGCCATCGGGAAGCCCAGGCGTGCGCGGGCTTGCa < 7:57902/149‑1 (MQ=255) cTTGGGTGGCAGCTCTTCGGTGCCCAGTTCTACCAGGAAATCTTGAGCACTCATTGTGCAGCCTCCAGCTTAGCCAACACTTCGTCACGCAGTTCAGGGGTGGCCATCGGGAAGCCCAGGCGTGCGCGGGCTTGCAGATAGCTTTgcgc > 8:91285/1‑149 (MQ=255) cTTGGGTGGCAGCTCTTCGGTGCCCAGTTCTACCAGGAAATCTTGAGCACTCATTGTGCAGCCTCCAGCTTAGCCAACACTTCGTCACGCAGTTCAGGGGTGGCCATCGGGAAGCCCAGGCGTGCGCGGGCTTGCAGATAGCTTTgcgc < 8:102192/149‑1 (MQ=255) acctatgaaatggtcctgaaggcatcgcaaaccttcaacctgctggacgcccgccgcgccatctcggtaaccgagcgccagcgttacatcctgcgtgtacgtaccctgGCCCAGGCGTGCGCGGGCTTGCAGATAGCTTTGCGCCACGt < 2:61188‑M1/41‑1 (MQ=255) tGGCAGCTCTTCGGTGCCAAGTTCTACCAGGAAATCTTCAGCACTCATTGTGCAGCCTCCAGCTTAGCCAACACTTCGTGACGCAGTTCAGGGGTGGCCATCGGGAAGCCCAGGCGTGCGCGGGCTTGCAGATAGCTTTGCGCCACGTc > 6:150024/1‑149 (MQ=255) gCAGCTCTTCGGTGCCCAGTTCTACCAGGAAATCTTGAGCACTCATTGTGCAGCCTCCAGCTTAGCCAACACTTCGTCACGCAGTTCAGGGGTGGCCATCGGGAAGCCCAGGCGTGCGCGGGCTTGCAGATAGCTTTGCGCCACGTcc < 4:50525/148‑1 (MQ=255) gCAGCTCTTCGGTGCCCAGTTCTACCAGGAAATCTTGAGCACTCATTGTGCAGCCTCCAGCTTAGCCAACACTTCGTCACGCAGTTCAGGGGTGGCCATCGGGAAGCCCAGGCGTGCGCGGGCTTGCAGATAGCTTTGCGCCACGTcc > 3:50525/1‑148 (MQ=255) cGGTGCCCAGTTCTACCAGGAAATCTTGAGCACTCATTGTGCAGCCTCCAGCTTAGCCAACACTTCGTCACGCAGTTCAGGGGTGGCCATCGGGAAGCCCAGGCGTGCGCGGGCTTGCAGATAGCTTTGCGCCACGTCCCGGGCCAgg < 6:79861/148‑1 (MQ=255) tgaaggcatcgcataccttcaacctgctggacgcccgccgcgccatctcggtaaccgagcgccagcgttacatcctgcgtgtacgtaccctgGCCCAGGCGTGCGCGGGCTTGCAGATAGCTTTGCGCCACGTCCCgg > 1:279007‑M1/93‑138 (MQ=255) tgaaggcatcgcataccttcaacctgctggacgcccgccgcgccatctcggtaaccgagcgccagcgttacatcctgcgtgtacgtaccctgGCCCAGGCGTGCGCGGGCTTGCAGATAGCTTTGCGCCACGTCCCgg < 2:279007‑M1/46‑1 (MQ=255) cccAGTTCTACCAGGAAATCTTGAGCACTCATTGTGCAGCCTCCAGCTTAGCCAACACTTCGTCACGCAGTTCAGGGGTGGCCATCGGGAAGCCCAGGCGTGCGCGGGCTTGCAGa > 5:165130/1‑116 (MQ=255) cccAGTTCTACCAGGAAATCTTGAGCACTCATTGTGCAGCCTCCAGCTTAGCCAACACTTCGTCACGCAGTTCAGGGGTGGCCATCGGGAAGCCCAGGCGTGCGCGGGCTTGCAGa < 6:165130/116‑1 (MQ=255) cccAGTTCTACCAGGAAATCTTGAGCACTCATTGTGCAGCCTCCAGCTTAGCCAACACTTCGTCACGCAGTTCAGGGGTGGCCATCGGGAAGCCCAGGCGTGCGCGGGCTTGCAGATAGCTTTGCGCCACGTCCCGGGCCAGGgtacgt < 5:324298/149‑1 (MQ=255) ccAGTTCTACCAGGAAATCTTGAGCACTCATTGTGCAGCCTCCAGCTTAGCCAACACTTCGTCACGCAGTTCAGGGGTGGCCATCGGGAAGCCCAGGCGTGCGCGGGCTTGCAGATAGCTTTGCGCCACGTCCCGGGCCAGGgtacgta < 5:70879/149‑1 (MQ=255) aCCAGGAAATCTTGAGCACTCATTGTGCAGCCTCCAGCTTAGCCAACACTTCGTCACGCAGTTCAGGGGTGGCCATCGGGAAGCCCAGGCGTGCGCGGGCTTGCAGATAGCTTTGCGCCACGTCCCGGGCCAGGGTACGTACACGCAg > 1:196266/1‑148 (MQ=255) cAGGAAATCTTGAGCACTCATTGTGCAGCCTCCAGCTTAGCCAACACTTCGTCACGCAGTTCAGGGGTGGCCATCGGGAAGCCCAGGCGTGCGCGGGCTTGCAGATAGCTTTGCGCCACGTCCCGGGCCAGGgt < 4:18517/134‑1 (MQ=255) cAGGAAATCTTGAGCACTCATTGTGCAGCCTCCAGCTTAGCCAACACTTCGTCACGCAGTTCAGGGGTGGCCATCGGGAAGCCCAGGCGTGCGCGGGCTTGCAGATAGCTTTGCGCCACGTCCCGGGCCAGGgt > 3:18517/1‑134 (MQ=255) aTCTTGAGCACTCATTGTGCAGCCTCCAGCTTAGCCAACACTTCGTCACGCAGTTCAGGGGTGGCCATCGGGAAGCCCAGGCGTGCGCGGGCTTGCAGATAGCTTTGCGCCACGTCCCGGGCCAGGGTACGTACACGCAGGATGTAACg < 2:196266/149‑1 (MQ=255) tCTTGAGCACTCATTGTGCAGCCTCCAGCTTAGCCAACACTTCGTCACGCAGTTCAGGGGTGGCCATCGGGAAGCCCAGGCGTGCGCGGGCTTGCAGa > 8:256509/1‑98 (MQ=255) tCTTGAGCACTCATTGTGCAGCCTCCAGCTTAGCCAACACTTCGTCACGCAGTTCAGGGGTGGCCATCGGGAAGCCCAGGCGTGCGCGGGCTTGCAGa < 7:256509/98‑1 (MQ=255) gAGCACTCATTGTGCAGCCTCCAGCTTAGCCAACACTTCGTCACGCAGTTCAGGGGTGGCCATCGGGAAGCCCAGGCGTGCGCGGGCTTGCAGATAGCTTTGCGCCACGTCCCGGGCCAGGGTACGTACACGCAGGATGTAACGCTg < 7:91285/147‑1 (MQ=255) gAGCACTCATTGTGCAGCCTCCAGCTTAGCCAACACTTCGTCACGCAGTTCAGGGGTGGCCATCGGGAAGCCCAGGCGTGCGCGGGCTTGCAGATAGCTTTGCGCCACGTCCCGGGCCAGGGTACGTACACGCAGGATGTAACGCTg > 2:257824/1‑147 (MQ=255) gAGCACTCATTGTGCAGCCTCCAGCTTAGCCAACACTTCGTCACGCAGTTCAGGGGTGGCCATAGGGAAGCCCAGGCGTGCGCGGGCTTGCAGATAGCTTTGCGCCACGTCCCGGGCCAGGGTACGTACACGCAGGATGTAACGCTGgc > 5:16647/1‑149 (MQ=255) aCTCATTGTGCAGCCTCCAGCTTAGCCAACACTTCGTCACGCAGTTCAGGGGTGGCCATCGGGAAGCCCAGGCGTGCGCGGGCTTGCAGATAGCTTTGCGCCACGTCCCGGGCCAGGGTACGTACACGCAGGATGTAACGCTGGCGCTc > 2:128765/1‑149 (MQ=255) tCATTGTGCAGCCTCCAGCTTAGCCAACACTTCGTCACGCAGTTCAGGGGTGGCCATCGGGAAGCCCAGGCGTGCGCGGGCTTGCAGATAGCTTTGCGCCACGTCCCGGGCCAGGGTACGTACACGCAGGATGTAAc > 3:298306/1‑137 (MQ=255) tCATTGTGCAGCCTCCAGCTTAGCCAACACTTCGTCACGCAGTTCAGGGGTGGCCATCGGGAAGCCCAGGCGTGCGCGGGCTTGCAGATAGCTTTGCGCCACGTCCCGGGCCAGGGTACGTACACGCAGGATGTAAc < 4:298306/137‑1 (MQ=255) tCATTGTGCAGCCTCCAGCTTAGCCAACACTTCGTCACGCAGTTCAGGGGTGGCCATCGGGAAGCCCAGGCGTGCGCGGGCTTGCAGATAGCTTTGCGCCACGTCCCGGGCCAGGGTACGTACACGCAGGATGTAACGCTGGCGCTCgg > 7:18323/1‑149 (MQ=255) tCATTGTGCAGCCTCCAGCTTAGCCAACACTTCGTCACGCAGTTCAGGGGTGGCCATCGGGAAGCCCAGGCGTGCGCGGGCTTGCAGATAGCTTTGCGCCACGTCCCGGGCCAGGGTACGTACACGCAGGATGTAACGCTGGCGCTCgg > 4:284005/1‑149 (MQ=255) cATTGTGCAGCCTCCAGCTTAGCCAACACTTCGTCACGCAGTTCAGGGGTGGCCATCGGGAAGCCCAGGCGTGCGCGGGCTTGCAGATAGCTTTGCGCCACGTCCCGGGCCAGGgt < 6:306858/116‑1 (MQ=255) cATTGTGCAGCCTCCAGCTTAGCCAACACTTCGTCACGCAGTTCAGGGGTGGCCATCGGGAAGCCCAGGCGTGAGCGGGCTTGCAGATAGCTTTGCGCCACGTCCCGGGCCAGGgt > 5:306858/1‑116 (MQ=255) aTTGTGCAGCCTCCAGCTTAGCCAACACTTCGTCACGCAGTTCAGGGGTGGCCATCGGGAAGCCCAGGCGTGCGCGGGCTTGCAGATAGCTTTGCGCCACGTCCCGGGCCAGGGTACGTACACGCAGGATGTAACGCTGGCGCTCgg < 8:18323/147‑1 (MQ=255) aTTGTGCAGCCTCCAGCTTAGCCAACACTTCGTCACGCAGTTCAGGGGTGGCCATCGGGAAGCCCAGGCGTGCGCGGGCTTGCAGATAGCTTTGCGCCACGTCCCGGGCCAGGGTACGTACACGCAGGATGTAACGCTGGCGCTCGGt < 5:150024/148‑1 (MQ=255) tgCAGCCTCCAGCTTAGCCAACACTTCGTCACGCAGTTCAGGGGTGGCCATCGGGAAGCCCAGGCGTGCGCGGGCTTGCAGATAGCTTTGCGCCACGTCCCGGGCCAgg < 8:15948/109‑1 (MQ=255) tgCAGCCTCCAGCTTAGCCAACACTTCGTCACGCAGTTCAGGGGTGGCCATCGGGAAGCCCAGGCGTGCGCGGGCTTGCAGATAGCTTTGCGCCACGTCCCGGGCCAgg > 7:15948/1‑109 (MQ=255) tgCAGCCTCCAGCTTAGCCAACACTTCGTCACGCAGTTCAGGGGTGGCCATCCGGAAGCCCAGGCGTGCGCGGGCTTGCAGATAGCTTTGCGCCACGTCCCGGGCCAGGGTACGTACACGCAGGATGTAACGCTGGCGCTCGGTTAcc < 1:257824/148‑1 (MQ=255) gCCTCCAGCTTAGCCAACACTTCGTCACGCAGTTCAGGGGTGGCCATCGGGAAGCCCAGGCGTGCGCGGGCTTGc < 2:37055/75‑1 (MQ=255) gCCTCCAGCTTAGCCAACACTTCGTCACGCAGTTCAGGGGTGGCCATCGGGAAGCCCAGGCGTGCGCGGGCTTGc > 1:37055/1‑75 (MQ=255) tCCAGCTTAGCCAACACTTCGTCACGCAGTTCAGGGGTGGCCATCGGGAAGCCCAGGCGTGCGCGGGCTTGCAGATAGCTTTGCGCCACGTCCCGGGCCAGGGTACGTACACGCAGGATGTAACGCTGGCGCTCGGTTACCGAGATGgc > 6:164606/1‑149 (MQ=255) cAACACTTCGTCACGCAGTTCAGGGGTGGCCATCGGGAAGCCCAGGCGTGCGCGGGCTTGCAGATAGCTTTGCGCCACGTCCCGGGCCAGGGTACGTACACGCAGGATGTAACGCTGGCGCTCGGTTACCGAGATGGCGCGGCGGGCGt < 3:138812/149‑1 (MQ=255) aaCACTTCGTCACGCAGTTCAGGGGTGGCCATCGGGAAGCCCAGGCGTGCGCGGGCTTGCAGATAGCTTTGCGCCACGTCCCGGGCCAGGGTACGTACACGCAGGATGTAACGCTGGCTCTCGGTTACCGAGATGGCGCGGCGGGCGTc < 1:188089/149‑1 (MQ=255) aaCACTTCGTCACGCAGTTCAGGGGTGGCCATCGGGAAGCCCAGGCGTGCGCGGGCTTGCAGATAGCTTTGCGCCACGTCCCGGGCCAGGGTACGTACACGCAGGATGTAACGCTGGCGCTCGGTTACCGAGATGGCGCGGCGGGCGTc > 6:161546/1‑149 (MQ=255) acacTTCGTCACGCAGTTCAGGGGTGGCCATCGGGAAGCCCAGGCGTGCGCGTGCTTGCAGATAGCTTTGCGCCACGTCCCGGGCCAGGGTACGTACACGCAGGATGTAACGCTGGCGCTCGGTTACCGAGATGGCGCGGCGGGCGTcc < 6:16647/149‑1 (MQ=255) cTTCGTCACGCAGTTCAGGGGTGGCCATCGGGAAGCCCAGGCGTGCGCGGGCTTGCAGATAGCTTTGCGCCACGTCCCGGGCCAGGGTACGTACACGCAGGATGTAACGCTGGCGCTCGGTTACCGAGATGGCGCGGCGGGCGTCcag > 3:39780/1‑148 (MQ=255) aCGCAGTTCAGGGGTGGCCATCGGGAAGCCCAGGCGTGCGCGGGCTTGCAGATAGCTTTGCGCCACGTCCCGGGCCAGGGTACGTACACGCAGGATGTAACGCTGGCGCTCGGTTACCGAGATGGCGCGGCGGGCGTCCAGCAGGtt < 7:234518/147‑1 (MQ=255) aCGCAGTTCAGGGGTGGCCATCGGGAAGCCCAGGCGTGCGCGGGCTTGCAGATAGCTTTGCGCCACGTCCCGGGCCAGGGTACGTACACGCAGGATGTAACGCTGGCGCTCGGTTACCGAGATGGCGCGGCGGGCGTCCAGCAGGtt > 8:234518/1‑147 (MQ=255) aCGCAGTTCAGGGGTGGCCATCGGGAAGCCCAGGCGTGCGCGGGCTTGCAGATAGCTTTGCGCCACGTCCCGGGCCAGGGTACGTACACGCAGGATGTAACGCTGGCGCTCGGTTACCGAGATGGCGCGGCGGGCGTCCAGCAGGTTg > 3:146508/1‑148 (MQ=255) cGCAGTTCAGGGGTGGCCATCGGGAAGCCCAGGCGTGCGCGGGCTTGCAGATAGCTTTGCGCCACGTCCCGGGCCAGGGTACGTACACGCAGGATGTAACGCTGGCGCTCGGTTACCGAGATGGCGCGGCGGGCGTCCAGCAGGTTGaa < 8:49210/149‑1 (MQ=255) gCAGTTCAGGGGTGGCCATCGGGAAGCCCAGGCGTGCGCGGGCTTGCAGATAGCTTTGCGCCACGTCCCGGGCCAGGGTACGTACACGCAGGATGTAACGCTGGCGCTCGGTTACCGAGATGGCGCggcgggc < 4:259542/133‑1 (MQ=255) gCAGTTCAGGGGTGGCCATCGGGAAGCCCAGGCGTGCGCGGGCTTGCAGATAGCTTTGCGCCACGTCCCGGGCCAGGGTACGTACACGCAGGATGTAACGCTGGCGCTCGGTTACCGAGATGGCGCggcgggc > 3:259542/1‑133 (MQ=255) ttCAGGGGTGGCCATCGGGAAGCCCAGGCGTGCGCGGGCTTGCAGATAGCTTTGCGCCACGTCCCGGGCCAGGGTACGTACACGCAGGATGTAACGCTGGCGCTCGGTTACCGAGATGGCGCGGTGGGCGTCCAGCAgg < 4:160707/139‑1 (MQ=255) ttCAGGGGTGGCCATCGGGAAGCCCAGGCGTGCGCGGGCTTGCAGATAGCTTTGCGCCACGTCCCGGGCCAGGGTACGTACACGCAGGATGTAACGCTGGCGCTCGGTTACCGAGATGGCGCGGTGGGCGTCCAGCAgg > 3:160707/1‑139 (MQ=255) tcgggggTGGCCATCGGGAAGCCCAGGCGTGCGCGGGCTTGCAGATAGCTTTGCGCCACGTCCCGGGCCAGGGTACGTACACGCAg < 4:143645/83‑1 (MQ=255) tcgggggTGGCCATCGGGAAGCCCAGGCGTGCGCGGGCTTGCAGATAGCTTTGCGCCACGTCCCGGGCCAGGGTACGTACACGCAg > 3:143645/4‑86 (MQ=255) aGGGGTGGCCATCGGGAAGCCCAGGCGTGCGCGGGCTTGCAGATAGCTTTGCGCCACGTCCCGGGCCAGGGTACGTACACGCAGGATGTAACGCTGGCGCTCGGTTACCGAGATGGCGCGGCGGGCGTCCAGCAGGTTGAAGGTATGCg > 7:295103/1‑149 (MQ=255) gggTGGCCATCGGGAAGCCCAGGCGTGCGCGGGCTTGCAGATAGCTTTGCGCCACGTCCCGGGCCAGGGTACGTACACGCAGGATGTAACGCTGGCGCTCGGTTACCGAGATGGCGCGGCGGGCGTCCAGCAGGTTGAAGGTATGCGAt > 1:202318/1‑149 (MQ=255) | GCCAGGAAGGCGTCGCCAAGGCTGGCGAGGGCCTTGGGTGGCAGCTCTTCGGTGCCCAGTTCTACCAGGAAATCTTGAGCACTCATTGTGCAGCCTCCAGCTTAGCCAACACTTCGTCACGCAGTTCAGGGGTGGCCATCGGGAAGCCCAGGCGTGCGCGGGCTTGCAGATAGCTTTGCGCCACGTCCCGGGCCAGGGTACGTACACGCAGGATGTAACGCTGGCGCTCGGTTACCGAGATGGCGCGGCGGGCGTCCAGCAGGTTGAAGGTATGCGAT > NC_002947/71819‑72096 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |