New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	345396 =	41 (0.830)	4 (0.090)	4/244	NT	8.8%	coding (207/1068 nt)	mutY	A/G‑specific adenine glycosylase
	?	NC_002947	345422 =	44 (0.940)					coding (181/1068 nt)	mutY	A/G‑specific adenine glycosylase

GCCAATGCCGGGCAGCTCGGTAAGCTGCTCGACACTGCGCGGGAATTCGCCGCCATGTTGCTCGACGACGACCTTGGCGGCCTTTTGCAGGTTGCGTGCGCGGGTGTAGTAGCCAAGGCCCGTCCACAGGTGCAGCACTTCGTCCTCCGGTGCCTCGGCCAGGGCTTGCACCGTTGGC‑AGGGCCTGCATGAAGCGGTCGAAGTAATTGAGCACGGTGCTGACCTGGGTCTGCTGCAACATGATTTCCGACACCCACACCCGGTACGGCGTGATGCCCTGTTGCCAGGGCAGGT  >  NC_002947/345249‑345541                                                                                                                                                    |                                                                                                                                                   gCCAATGCCGGGCAGCTCGGTAAGCTGCTCGACACTGCGCGGGAATTCGCCGCCATGTTGCTCGACGACGACCTTGGCGGCCTTTTGCAGGTTGCGTGCGCGGGTGTAGTAGCCAAGGCCCGTCCACAGGTGCAGCACTTCGTCCTCCg                                                                                                                                                   >  6:114718/1‑149 (MQ=255)   tggtatgacgagcacggccggcacgacctgccctggcaacagggcatcacgccgtaccgggtgtgggtgtcggaaatcatgttgcagcagacccaggtcagcaccgtgctcaattacttcgaccgcttcatgcaggccctgccaaCGGt                                                                                                                                                 <  8:250007‑M1/4‑1 (MQ=255)   cAATGCCGGGCAGCTCGGTAAGCTGCTCGACACTGCGCGGGAATTCGCCGCCATGTTGCTCGACGACGACCTTGGCGGCCTTTTGCAGGTTGCGTGCGCGGGTGTAGTAGCCAAGGCCCGTCCACAGGTGCAGCACTTCGTCCTCCGGt                                                                                                                                                 <  8:20591/149‑1 (MQ=255)                        gctgctCGACACTGCGCGGGAATTCGCCGCCATGTTGCTCGACGACGACCTTGGCGGCCTTTTGCAGGTTGCGTGCGCGGGTGTAGTAGCCAAGGCCCGTCCACAGGTGCAGCACTTCGTCCTCCGGTGCCTCGGCCAg                                                                                                                                      <  1:226077/139‑1 (MQ=255)                        gctgctCGACACTGCGCGGGAATTCGCCGCCATGTTGCTCGACGACGACCTTGGCGGCCTTTTGCAGGTTGCGTGCGCGGGTGTAGTAGCCAAGGCCCGTCCACAGGTGCAGCACTTCGTCCTCCGGTGCCTCGGCCAg                                                                                                                                      >  2:226077/1‑139 (MQ=255)                            ctCGACACTGCGCGGGAATTCGCCGCCATGTTGCTCGACGACGACCTTGGCGGCCTTTTGCAGGTTGCGTGCGCGGGTGTAGTAGCCAAGGCCCGTCCACAGGTGCAGCACTTCGTCCTCCGGTGCCTCGGCCAGGGCTTGCACCGTTg                                                                                                                        >  1:148088/1‑149 (MQ=255)                                   cTGCGCGGGAATTCGCCGCCATGTTGCTCGACGACGACCTTGGCGGCCTTTTGCAGGTTGCGTGCGCGGGTGTAGTAGCCAAGGCCCGTCCACAGGTGCAGCACTTCGTCCTCCGGTGCCTCGGCCAGGGCTTGCACCGTTGGC‑AGGGc                                                                                                                >  6:304155/1‑149 (MQ=255)                                   cTGCGCGGGAATTCGCCGCCATGTTGCTCGACGACGACCTTGGCGGCCTTTTGCAGGTTGCGTGCGCGGGTGTAGTAGCCAAGGCCCGTCCACAGGTGCAGCACTTCGTCCTCCGGTGCCTCGGCCAGGGCTTGCACCGTTGGC‑AGGGc                                                                                                                <  5:290402/149‑1 (MQ=255)                                   cTGCGCGGGAATTCGCCGCCATGTTGCTCGACGACGACCTTGGCGGCCTTTTGCAGGTTGCGTGCGCGGGTGTAGTAGCCAAGGCCCGTCCACAGGTGCAGCACTTCGTCCTCCGGTGCCTCGGCCAGGGCTTGCACCGTTGGC‑AGGGc                                                                                                                <  2:148088/149‑1 (MQ=255)                                      cgcgGGAATTCGCCGCCATGTTGCTCGACGACGACCTTGGCGGCCTTTTGCAGGTTGCGTGCGCGGGTGTAGTAGCCAAGGCCCGTCCACAGGTGCAGCACTTCGTCCTCCGGTGCCTCGGCCAGGGCTTGCACCGTTGGC‑AGGGCCt                                                                                                              <  5:114718/148‑1 (MQ=255)                                          ggAATTCGCCGCCATGTTGCTCGACGACGACCTTGGCGGCCTTTTGCAGGTTGCGTGCGCGGGTGTAGTAGCCAAGGCCCGTCCACAGGTGCAGCACTTCGTCCTCCGGTGCCTCGGCCAGGGCTTGCACCGTTGGC‑AGGGCCTGCAt                                                                                                          >  8:9860/1‑148 (MQ=255)                                           gAATTCGCCGCCATGTTGCTCGACGACGACCTTGGCGGCCTTTTGCAGGTTGCGTGCGCGGGTGTAGTAGCCAAGGCCCGTCCACAGGTGCAGCACTTCGTCCTCCGGTGCCTCGGCCAGGGCTTGCACCGTTGGC‑AGGGCCTGCATg                                                                                                         >  7:197315/1‑148 (MQ=255)                                                 gccgccATGTTGCTCGACGACGACCTTGGCGGCCTTTTGCAGGTTGCGTGCGCGGGTGTAGTAGCCAAGGCCCGTCCACAGGTGCAGCACTTCGTCCTCCGGTGCCTCGGCCAGGGCTTGCACCGTTGGC‑AGGGCCTGCATGAAGCGGt                                                                                                  >  7:100051/1‑149 (MQ=255)                                                   cgccATGTTGCTCGACGACGACCTTGGCGGCCTTTTGCAGGTTGCGTGCGCGGGTGTAGTAGCCAAGGCCCGTCCACAGGTGCAGCACTTCGTCCTCCgg                                                                                                                                                  >  2:77241/1‑100 (MQ=255)                                                     cgccgtaccgggttgggtgtcggaaatcatgttgcagcagacccaggtcagcaccgtgctcaattacttcgaccgcttcatgcaggccctgccaaCGGTGCCTCGGCCAGGGCTTGCACCGTTGGC‑Agg                                                                                                                  >  8:222804‑M1/96‑129 (MQ=255)                                                     cgccgtaccgggttgggtgtcggaaatcatgttgcagcagacccaggtcagcaccgtgctcaattacttcgaccgcttcatgcaggccctgccaaCGGTGCCTCGGCCAGGGCTTGCACCGTTGGC‑Agg                                                                                                                  <  7:222804‑M1/34‑1 (MQ=255)                                                          ttGCTCGACGACGACCTTGGCGGCCTTTTGCAGGTTGCGTGCGCGGGTGTAGTAGCCAAGGCCCGTCCACAGGTGCAGCACTTCGTCCTCCGGTGCCTCGGCCAGGGCTTGCACCGTTGGC‑AGGGCCTGCATGAAGCGGTCGAAGTAAt                                                                                         <  8:100051/149‑1 (MQ=255)                                                            gCTCGACGACGACCTTGGCGGCCTTTTGCAGGTTGCGTGCGCGGGTGTAGTAGCCAAGGCCCGTCCACAGGTGCAGCACTTCGTCCTCCGGTGCCTCGGCCAGGGCTTGCACCGTTGGC‑AGGGCCTGCATGAAGCGGTCGAAGTAAtt                                                                                        >  2:142137/1‑148 (MQ=255)                                                                gacgacgacCTTGGCGGCCTTTTGCAGGATGCGTGCGCGGGTGTAGTAGCCAAGGCCCGTCCACAGGTGCAGCACTTCGTCCTCCGGTGCCTCGGCCAGGGCTTGCACCGTTGGC‑AGGGCCTGCATGAAGCGGTCGAAGTAATTGAGCa                                                                                   >  5:31722/1‑149 (MQ=255)                                                                  cgacgacCTTGGCGGCCTTTTGCAGGTTGCGTGCGCGGGTGTAGTAGCCAAGGCCCGTCCACAGGTGCAGCACTTCGTCCTCCGGTGCCTCGGCCAGGGCTTGCACCGTTGGC‑AGGGCCTGCATGAAGCGGTCGAAGTAATTGAGCACg                                                                                 >  4:86076/1‑149 (MQ=255)                                                                   gacgacCTTGGCGGCCTTTTGCAGGTTGCGTGCGCGGGTTTAGTAGCCAAGGCCCGTCCACAGGTTCAGCACTTCGTCCTCCGGTGCCTCGGCCAGGGCTTGCACCGTTGGCAAGGGCCTGCATGAAGCGGTCGAAGTAATTGAGc                                                                                    <  1:38243/146‑1 (MQ=255)                                                                   gacgacCTTGGCGGCCTTTTGCAGGTTGCGTGCGCGGGTGTAGTAGCCAAGGCCCGTCCACAGGTGCAGCACTTCGTCCTCCGGTGCCTCGGCCAGGGCTTGCACCGTTGGC‑AGGGCCTGCATGAAGCGGTCGAAGTAATTGAGc                                                                                    >  2:38243/1‑145 (MQ=255)                                                                        ccTTGGCGGCCTTTTGCAGGTTGCGTGCGCGGGTGTAGTAGCCAAGGCCCGTCCACAGGTGCAGCACTTCGTCCTCCGGTGCCTCGGCCAGGGCTTGCACCGTTGGC‑AGGGCCTGCATGAAGCGGTCGAAGTAATTGAGCACGGTGCt                                                                            >  3:241880/1‑148 (MQ=255)                                                                          ttGGCGGCCTTTTGCAGGTTGCGTGCGCGGGTGTAGTAGCCAAGGCCCGTCCACAGGTGCAGCACTTCGTCCTCCGGTGCCTCGGCCAGGGCTTGCACCGTTGGC‑AGGGCCTGCATGAAGCGGTCGAAGTAATTGAGCACGGTGCTGAc                                                                         <  4:188443/149‑1 (MQ=255)                                                                          ggaaatcatgttgcagcagacccaggtcagcaccgtgctcaattacttcgaccgcttcatgcaggccctgccaaCGGTGCCTCGGCCAGGGCTTGCACCGTTg                                                                                                                        >  5:223050‑M1/75‑103 (MQ=255)                                                                          ggaaatcatgttgcagcagacccaggtcagcaccgtgctcaattacttcgaccgcttcatgcaggccctgccaaCGGTGCCTCGGCCAGGGCTTGCACCGTTg                                                                                                                        <  6:223050‑M1/29‑1 (MQ=255)                                                                                     ttGCAGGTTGCGTGCGCGGGTGTAGTAGCCAAGGCCCGTCCACAGGTGCAGCACTTCGTCCTCCGGTGCCTCGGCCAGGGCTTGCACCGTTGGC‑AGGGCCTGCATGAAGCGGTCGAAGTAATTGAGCACGGTGCTGACCTGGGTctg                                                                <  3:86076/147‑1 (MQ=255)                                                                                      tGCAGGTTGCGTGCGCGGGTGTAGTAGCCAAGGCCCGTCCACAGGTGCAGCACTTCGTCCTCCGGTGCCTCGGCCAGGGCTTGCACCGTTGGC‑AGGGCCTGCATGAAGCGGTCGAAGTAATTGAGCACGGTGCTGACCTGGGTctgct                                                              <  8:197315/148‑1 (MQ=255)                                                                                               cgtgcgCGGGTGTAGTAGCCAAGGCCCGTCCACAGGTGCAGCACTTCGTCCTCCGGTGCCTCGGCCAGGGCTTGCACCGTTGGC‑AGGGCCTGCATGAAGCGGTCGAAg                                                                                             >  7:268520/1‑108 (MQ=255)                                                                                               cgtgcgCGGGTGTAGTAGCCAAGGCCCGTCCACAGGTGCAGCACTTCGTCCTCCGGTGCCTCGGCCAGGGCTTGCACCGTTGGC‑AGGGCCTGCATGAAGCGGTCGAAg                                                                                             <  8:268520/108‑1 (MQ=255)                                                                                               cgtgcgCGGGTGTAGTAGCCAAGGCCCGTCCACAGGTGCAGCACTTCGTCCTCCGGTGCCTCGGCCAGGGCTTGCACCGTTGGC‑AGGGCCTGCATGAAGCGGTCGAAGTAATTGAGCACGGTGCTGACCTGGGTCTGCTGCAACATGa                                                     <  6:31722/148‑1 (MQ=255)                                                                                                  gcgcGGGTGTAGTAGCCAAGGCCCGTCCACAGGTGCAGCACTTCGTCCTCCGGTGCCTCGGCCAGGGCTTGCACCGTTGGC‑AGGGCCTGCATGAAGCGGTCGAAGTAATTGAGCACGGTGCTGACCTGGGTCTGCTGCAACATGATTTc                                                 >  5:9231/1‑149 (MQ=255)                                                                                                    gcgGGTGTAGTAGCCAAGGCCCGTCCACAGGTGCAGCACTTCGTCCTCCGGTGCCTCGGCCAGGGCTTGCACCGTTGGC‑AGGGCCTGCATGAAGCGGTCGAAGTAATTGAGCACGGTGCTGACCTGGGTCTGCTGCAACATGATTTcc                                                >  2:35725/1‑148 (MQ=255)                                                                                                    gcgGGTGTAGTAGCCAAGGCCCGTCCACAGGTGCAGCACTTCGTCCTCCGGTGCCTCGGCCAGGGCTTGCACCGTTGGC‑AGGGCCTGCATGAAGCGGTCGAAGTAATTGAGCACGGTGCTGACCTGGGTCTGCTGCAACATGATTTCCg                                               <  4:241880/149‑1 (MQ=255)                                                                                                      gggTGTAGTAGCCAAGGCCCGTCCACAGGTGCAGCACTTCGTCCTCCGGTGCCTCGGCCAGGGCTTGCACCGTTGGC‑AGGGCCTGCATGAAGCGGTCGAAGTAATTGAGCACGGTGCTGACCTGGGTCTGCTGCAACATGATTTCCGac                                             <  1:142137/149‑1 (MQ=255)                                                                                                          gtagtaGCCAAGGCCCGTCCACAGGTGCAGCACTTCGTCCTCCGGTGCCTCGGCCAGGGCTTGCACCGTTGGC‑AGGGCCTGCATGAAGCGGTCGAAGTAATTGAGCACGGTGCTGACCTGGGTCTGCTGCAACATGATTTCCGacacc                                          >  1:172882/1‑148 (MQ=255)                                                                                                            agtagCCAAGGCCCGTCCACAGGTGCAGCACTTCGTCCTCCGGTGCCTCGGCCAGGGCTTGCACCGTTGGC‑AGGGCCTGCATGAAGCGGTCGAAGTAATTGAGCACGGTGCTGACCTGGGTCTGCTGCAACATGATTTCCGacacccac                                       >  7:169948/1‑149 (MQ=255)                                                                                                             gtagCCAAGGCCCGTCCACAGGTGCAGCACTTCGTCCTCCGGTGCCTCGGCCAGGGCTTGCACCGTTGGC‑AGGGCCTGCATGAAGCGGTCGAAGTAATTGAGCACGGTGCTGACCTGGGGCTGCTGGAACATGATTTCCGacacccaca                                      >  5:263341/1‑149 (MQ=255)                                                                                                                 ccAAGGCCCGTCCACAGGTGCAGCACTTCGTCCTCCGGTGCCTCGGCCAGGGCTTGCACCGTTGGC‑AGGGCCTGCATGAAGCGGTCGAAGTAATTGAGCACGGTGCTGACCTGGGTCTGCTGCAACATGATTTCCGACACCCACACCCg                                  >  8:195240/1‑149 (MQ=255)                                                                                                                  cAAGGCCCGTCCACAGGTGCAGCACTTCGTCCTCCGGTGCCTCGGCCAGGGCTTGCACCGTTGGC‑AGGGCCTGCATGAAGCGGTCGAAGTAATTGAGCACGGTGCTGACCTGGGTCTGCTGCAACATGATTTCCGACACCCACACCCgg                                 >  3:180126/1‑149 (MQ=255)                                                                                                                        ccGTCCACAGGTGCAGCACTTCGTCCTCCGGTGCCTCGGCCAGGGCTTGCACCGTTGGC‑AGGGCCTGCATGAAGCGGTCGAAGTAATTGAGCACGGTGCTGACCTGGGTCTGCTGCAACATGATTTCCGACACCCACACCCGGTACGGc                           >  1:316795/1‑149 (MQ=255)                                                                                                                        ccGTCCACAGGTGCAGCACTTCGTCCTCCGGTGCCTCGGCCAGGGCTTGCACCGTTGGC‑AGGGCCTGCATGAAGCGGTCGAAGTAATTGAGCACGGTGCTGACCTGGGTCTGCTGCAACATGATTTCCGACACCCACACCCGGTACGGc                           >  7:250007/1‑149 (MQ=255)                                                                                                                        ccGTCCACAGGTGCAGCACTTCGTCCTCCGGTGCCTCGGCCAGGGCTTGCACCGTTGGC‑AGGGCCTGCATGAAGCGGTCGAAGTAATTGAGCACGGTGCTGACCTGGGTCTGCTGCAACATGATTTCCGACACCCACACCCGGTACGGc                           >  3:195826/1‑149 (MQ=255)                                                                                                                              acaGGTGCAGCACTTCGTCCTCCGGTGCCTCGGCCAGGGCTTGCACCGTTGGC‑AGGGCCTGCATGAAGCGGTCGAAGTAATTGAGCACGGTGCTGACCTGGGTCTGCTGCAACATGATTTCCGACACCCACACCCGGTACGGCGTGATg                     >  7:217968/1‑149 (MQ=255)                                                                                                                                       gcaCTTCGTCCTCCGGTGCCTCGGCCAGGGCTTGCACCGTTGGC‑AGGGCCTGCATGAAGCGGTCGAAGTAATTGAGCACGGTGCTGACCTGGGTCTGCTGCAACATGATTTCCGacacccacacc                                    >  1:200731/1‑125 (MQ=255)                                                                                                                                       gcaCTTCGTCCTCCGGTGCCTCGGCCAGGGCTTGCACCGTTGGC‑AGGGCCTGCATGAAGCGGTCGAAGTAATTGAGCACGGTGCTGACCTGGGTCTGCTGCAACATGATTTCCGacacccacacc                                    <  2:200731/125‑1 (MQ=255)                                                                                                                                       gcaCTTCGTCCTCCGGTGCCTCGGCCAGGGCTTGCACCGTTGGC‑AGGGCCTGCATGAAGAGGTCGAAGTAATTGAGCACGGTGCTGACCTGGGTCTGCTGCAACATGATTTCCGACACCCACACCCGGTACGGCGTGATGCCCTGTTGc            >  1:281032/1‑149 (MQ=255)                                                                                                                                           ttCGTCCTCCGGTGCCTCGGCCAGGGCTTGCACCGTTGGC‑AGGGCCTGCATGAAGCGGTCGAAGTAATTGAGCACGGTGCTGACCTGGGTCTGCTGCAACATGATTTCCGACACCCACACCCGGTACGGCGTGATGCCCTGTTGCCAgg        >  1:294115/1‑149 (MQ=255)                                                                                                                                              gTCCTCCGGTGCCTCGGCCAGGGCTTGCACCGTTGGC‑AGGGCCTGCATGAAGCGGTCGAAGTAATTGAGCACGGTGCTGACCTGGGTCTGCTGCAACATGATTTCCGACACCCACACCCGGTACGGCGTGATGCCCTGTTGCCAGGGCa     <  1:35725/149‑1 (MQ=255)                                                                                                                                               tcctccGGTGCCTCGGCCAGGGCTTGCACCGTTGGC‑AGGGCCTGCATGAAGCGGTCGAAGTAATTGAGCACGGTGCTGACCTGGGTCTGCTGCAACATGATTTCCGACACCCACACCCGGTACGGCGTGATGCCCTGTTGCCAGGGCAg    <  2:316795/149‑1 (MQ=255)                                                                                                                                                 ctccGGTGCCTCGGCCAGGGCTTGCACCGTTGGC‑AGGGCCTGCATGAAGCGGTCGAAGTAATTGAGCACGGTGCTGACCTGGGTCTGCTGCAACATGATTTCCGACACCCACACCCGGTACGGCGTGATGCCCTGTTGCCAGGGCAGGt  >  2:121199/1‑149 (MQ=255)                                                                                                                                                    |                                                                                                                                                   GCCAATGCCGGGCAGCTCGGTAAGCTGCTCGACACTGCGCGGGAATTCGCCGCCATGTTGCTCGACGACGACCTTGGCGGCCTTTTGCAGGTTGCGTGCGCGGGTGTAGTAGCCAAGGCCCGTCCACAGGTGCAGCACTTCGTCCTCCGGTGCCTCGGCCAGGGCTTGCACCGTTGGC‑AGGGCCTGCATGAAGCGGTCGAAGTAATTGAGCACGGTGCTGACCTGGGTCTGCTGCAACATGATTTCCGACACCCACACCCGGTACGGCGTGATGCCCTGTTGCCAGGGCAGGT  >  NC_002947/345249‑345541

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.