New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	345396 =	41 (0.830)	4 (0.090)	4/244	NT	8.8%	coding (207/1068 nt)	mutY	A/G‑specific adenine glycosylase
	?	NC_002947	345422 =	44 (0.940)					coding (181/1068 nt)	mutY	A/G‑specific adenine glycosylase

CTCGACACTGCGCGGGAATTCGCCGCCATGTTGCTCGACGACGACCTTGGCGGCCTTTTGCAGGTTGCGTGCGCGGGTGTAGTAGCCAAGGCCCGTCCACAGGTGCAGCACTTCGTCCTCCGGTGCCTCGGCCAGGGCTTGCACCGTTGGC‑AGGGCCTGCATGAAGCGGTCGAAGTAATTGAGCACGGTGCTGACCTGGGTCTGCTGCAACATGATTTCCGACACCCACACCCGGTACGGCGTGATGCCCTGTTGCCAGGGCAGGTCGTGCCGGCCGTGCTCGTCATACCA  >  NC_002947/345276‑345566                                                                                                                                                   |                                                                                                                                                  ctCGACACTGCGCGGGAATTCGCCGCCATGTTGCTCGACGACGACCTTGGCGGCCTTTTGCAGGTTGCGTGCGCGGGTGTAGTAGCCAAGGCCCGTCCACAGGTGCAGCACTTCGTCCTCCGGTGCCTCGGCCAGGGCTTGCACCGTTg                                                                                                                                                 >  1:148088/1‑149 (MQ=255)        cTGCGCGGGAATTCGCCGCCATGTTGCTCGACGACGACCTTGGCGGCCTTTTGCAGGTTGCGTGCGCGGGTGTAGTAGCCAAGGCCCGTCCACAGGTGCAGCACTTCGTCCTCCGGTGCCTCGGCCAGGGCTTGCACCGTTGGC‑AGGGc                                                                                                                                         >  6:304155/1‑149 (MQ=255)        cTGCGCGGGAATTCGCCGCCATGTTGCTCGACGACGACCTTGGCGGCCTTTTGCAGGTTGCGTGCGCGGGTGTAGTAGCCAAGGCCCGTCCACAGGTGCAGCACTTCGTCCTCCGGTGCCTCGGCCAGGGCTTGCACCGTTGGC‑AGGGc                                                                                                                                         <  2:148088/149‑1 (MQ=255)        cTGCGCGGGAATTCGCCGCCATGTTGCTCGACGACGACCTTGGCGGCCTTTTGCAGGTTGCGTGCGCGGGTGTAGTAGCCAAGGCCCGTCCACAGGTGCAGCACTTCGTCCTCCGGTGCCTCGGCCAGGGCTTGCACCGTTGGC‑AGGGc                                                                                                                                         <  5:290402/149‑1 (MQ=255)           cgcgGGAATTCGCCGCCATGTTGCTCGACGACGACCTTGGCGGCCTTTTGCAGGTTGCGTGCGCGGGTGTAGTAGCCAAGGCCCGTCCACAGGTGCAGCACTTCGTCCTCCGGTGCCTCGGCCAGGGCTTGCACCGTTGGC‑AGGGCCt                                                                                                                                       <  5:114718/148‑1 (MQ=255)               ggAATTCGCCGCCATGTTGCTCGACGACGACCTTGGCGGCCTTTTGCAGGTTGCGTGCGCGGGTGTAGTAGCCAAGGCCCGTCCACAGGTGCAGCACTTCGTCCTCCGGTGCCTCGGCCAGGGCTTGCACCGTTGGC‑AGGGCCTGCAt                                                                                                                                   >  8:9860/1‑148 (MQ=255)                gAATTCGCCGCCATGTTGCTCGACGACGACCTTGGCGGCCTTTTGCAGGTTGCGTGCGCGGGTGTAGTAGCCAAGGCCCGTCCACAGGTGCAGCACTTCGTCCTCCGGTGCCTCGGCCAGGGCTTGCACCGTTGGC‑AGGGCCTGCATg                                                                                                                                  >  7:197315/1‑148 (MQ=255)                      gccgccATGTTGCTCGACGACGACCTTGGCGGCCTTTTGCAGGTTGCGTGCGCGGGTGTAGTAGCCAAGGCCCGTCCACAGGTGCAGCACTTCGTCCTCCGGTGCCTCGGCCAGGGCTTGCACCGTTGGC‑AGGGCCTGCATGAAGCGGt                                                                                                                           >  7:100051/1‑149 (MQ=255)                          cgccgtaccgggttgggtgtcggaaatcatgttgcagcagacccaggtcagcaccgtgctcaattacttcgaccgcttcatgcaggccctgccaaCGGTGCCTCGGCCAGGGCTTGCACCGTTGGC‑Agg                                                                                                                                           >  8:222804‑M1/96‑129 (MQ=255)                          cgccgtaccgggttgggtgtcggaaatcatgttgcagcagacccaggtcagcaccgtgctcaattacttcgaccgcttcatgcaggccctgccaaCGGTGCCTCGGCCAGGGCTTGCACCGTTGGC‑Agg                                                                                                                                           <  7:222804‑M1/34‑1 (MQ=255)                               ttGCTCGACGACGACCTTGGCGGCCTTTTGCAGGTTGCGTGCGCGGGTGTAGTAGCCAAGGCCCGTCCACAGGTGCAGCACTTCGTCCTCCGGTGCCTCGGCCAGGGCTTGCACCGTTGGC‑AGGGCCTGCATGAAGCGGTCGAAGTAAt                                                                                                                  <  8:100051/149‑1 (MQ=255)                                 gCTCGACGACGACCTTGGCGGCCTTTTGCAGGTTGCGTGCGCGGGTGTAGTAGCCAAGGCCCGTCCACAGGTGCAGCACTTCGTCCTCCGGTGCCTCGGCCAGGGCTTGCACCGTTGGC‑AGGGCCTGCATGAAGCGGTCGAAGTAAtt                                                                                                                 >  2:142137/1‑148 (MQ=255)                                     gacgacgacCTTGGCGGCCTTTTGCAGGATGCGTGCGCGGGTGTAGTAGCCAAGGCCCGTCCACAGGTGCAGCACTTCGTCCTCCGGTGCCTCGGCCAGGGCTTGCACCGTTGGC‑AGGGCCTGCATGAAGCGGTCGAAGTAATTGAGCa                                                                                                            >  5:31722/1‑149 (MQ=255)                                       cgacgacCTTGGCGGCCTTTTGCAGGTTGCGTGCGCGGGTGTAGTAGCCAAGGCCCGTCCACAGGTGCAGCACTTCGTCCTCCGGTGCCTCGGCCAGGGCTTGCACCGTTGGC‑AGGGCCTGCATGAAGCGGTCGAAGTAATTGAGCACg                                                                                                          >  4:86076/1‑149 (MQ=255)                                        gacgacCTTGGCGGCCTTTTGCAGGTTGCGTGCGCGGGTTTAGTAGCCAAGGCCCGTCCACAGGTTCAGCACTTCGTCCTCCGGTGCCTCGGCCAGGGCTTGCACCGTTGGCAAGGGCCTGCATGAAGCGGTCGAAGTAATTGAGc                                                                                                             <  1:38243/146‑1 (MQ=255)                                        gacgacCTTGGCGGCCTTTTGCAGGTTGCGTGCGCGGGTGTAGTAGCCAAGGCCCGTCCACAGGTGCAGCACTTCGTCCTCCGGTGCCTCGGCCAGGGCTTGCACCGTTGGC‑AGGGCCTGCATGAAGCGGTCGAAGTAATTGAGc                                                                                                             >  2:38243/1‑145 (MQ=255)                                             ccTTGGCGGCCTTTTGCAGGTTGCGTGCGCGGGTGTAGTAGCCAAGGCCCGTCCACAGGTGCAGCACTTCGTCCTCCGGTGCCTCGGCCAGGGCTTGCACCGTTGGC‑AGGGCCTGCATGAAGCGGTCGAAGTAATTGAGCACGGTGCt                                                                                                     >  3:241880/1‑148 (MQ=255)                                               ttGGCGGCCTTTTGCAGGTTGCGTGCGCGGGTGTAGTAGCCAAGGCCCGTCCACAGGTGCAGCACTTCGTCCTCCGGTGCCTCGGCCAGGGCTTGCACCGTTGGC‑AGGGCCTGCATGAAGCGGTCGAAGTAATTGAGCACGGTGCTGAc                                                                                                  <  4:188443/149‑1 (MQ=255)                                               ggaaatcatgttgcagcagacccaggtcagcaccgtgctcaattacttcgaccgcttcatgcaggccctgccaaCGGTGCCTCGGCCAGGGCTTGCACCGTTg                                                                                                                                                 >  5:223050‑M1/75‑103 (MQ=255)                                               ggaaatcatgttgcagcagacccaggtcagcaccgtgctcaattacttcgaccgcttcatgcaggccctgccaaCGGTGCCTCGGCCAGGGCTTGCACCGTTg                                                                                                                                                 <  6:223050‑M1/29‑1 (MQ=255)                                                          ttGCAGGTTGCGTGCGCGGGTGTAGTAGCCAAGGCCCGTCCACAGGTGCAGCACTTCGTCCTCCGGTGCCTCGGCCAGGGCTTGCACCGTTGGC‑AGGGCCTGCATGAAGCGGTCGAAGTAATTGAGCACGGTGCTGACCTGGGTctg                                                                                         <  3:86076/147‑1 (MQ=255)                                                           tGCAGGTTGCGTGCGCGGGTGTAGTAGCCAAGGCCCGTCCACAGGTGCAGCACTTCGTCCTCCGGTGCCTCGGCCAGGGCTTGCACCGTTGGC‑AGGGCCTGCATGAAGCGGTCGAAGTAATTGAGCACGGTGCTGACCTGGGTctgct                                                                                       <  8:197315/148‑1 (MQ=255)                                                                    cgtgcgCGGGTGTAGTAGCCAAGGCCCGTCCACAGGTGCAGCACTTCGTCCTCCGGTGCCTCGGCCAGGGCTTGCACCGTTGGC‑AGGGCCTGCATGAAGCGGTCGAAg                                                                                                                      <  8:268520/108‑1 (MQ=255)                                                                    cgtgcgCGGGTGTAGTAGCCAAGGCCCGTCCACAGGTGCAGCACTTCGTCCTCCGGTGCCTCGGCCAGGGCTTGCACCGTTGGC‑AGGGCCTGCATGAAGCGGTCGAAg                                                                                                                      >  7:268520/1‑108 (MQ=255)                                                                    cgtgcgCGGGTGTAGTAGCCAAGGCCCGTCCACAGGTGCAGCACTTCGTCCTCCGGTGCCTCGGCCAGGGCTTGCACCGTTGGC‑AGGGCCTGCATGAAGCGGTCGAAGTAATTGAGCACGGTGCTGACCTGGGTCTGCTGCAACATGa                                                                              <  6:31722/148‑1 (MQ=255)                                                                       gcgcGGGTGTAGTAGCCAAGGCCCGTCCACAGGTGCAGCACTTCGTCCTCCGGTGCCTCGGCCAGGGCTTGCACCGTTGGC‑AGGGCCTGCATGAAGCGGTCGAAGTAATTGAGCACGGTGCTGACCTGGGTCTGCTGCAACATGATTTc                                                                          >  5:9231/1‑149 (MQ=255)                                                                         gcgGGTGTAGTAGCCAAGGCCCGTCCACAGGTGCAGCACTTCGTCCTCCGGTGCCTCGGCCAGGGCTTGCACCGTTGGC‑AGGGCCTGCATGAAGCGGTCGAAGTAATTGAGCACGGTGCTGACCTGGGTCTGCTGCAACATGATTTcc                                                                         >  2:35725/1‑148 (MQ=255)                                                                         gcgGGTGTAGTAGCCAAGGCCCGTCCACAGGTGCAGCACTTCGTCCTCCGGTGCCTCGGCCAGGGCTTGCACCGTTGGC‑AGGGCCTGCATGAAGCGGTCGAAGTAATTGAGCACGGTGCTGACCTGGGTCTGCTGCAACATGATTTCCg                                                                        <  4:241880/149‑1 (MQ=255)                                                                           gggTGTAGTAGCCAAGGCCCGTCCACAGGTGCAGCACTTCGTCCTCCGGTGCCTCGGCCAGGGCTTGCACCGTTGGC‑AGGGCCTGCATGAAGCGGTCGAAGTAATTGAGCACGGTGCTGACCTGGGTCTGCTGCAACATGATTTCCGac                                                                      <  1:142137/149‑1 (MQ=255)                                                                               gtagtaGCCAAGGCCCGTCCACAGGTGCAGCACTTCGTCCTCCGGTGCCTCGGCCAGGGCTTGCACCGTTGGC‑AGGGCCTGCATGAAGCGGTCGAAGTAATTGAGCACGGTGCTGACCTGGGTCTGCTGCAACATGATTTCCGacacc                                                                   >  1:172882/1‑148 (MQ=255)                                                                                 agtagCCAAGGCCCGTCCACAGGTGCAGCACTTCGTCCTCCGGTGCCTCGGCCAGGGCTTGCACCGTTGGC‑AGGGCCTGCATGAAGCGGTCGAAGTAATTGAGCACGGTGCTGACCTGGGTCTGCTGCAACATGATTTCCGacacccac                                                                >  7:169948/1‑149 (MQ=255)                                                                                  gtagCCAAGGCCCGTCCACAGGTGCAGCACTTCGTCCTCCGGTGCCTCGGCCAGGGCTTGCACCGTTGGC‑AGGGCCTGCATGAAGCGGTCGAAGTAATTGAGCACGGTGCTGACCTGGGGCTGCTGGAACATGATTTCCGacacccaca                                                               >  5:263341/1‑149 (MQ=255)                                                                                      ccAAGGCCCGTCCACAGGTGCAGCACTTCGTCCTCCGGTGCCTCGGCCAGGGCTTGCACCGTTGGC‑AGGGCCTGCATGAAGCGGTCGAAGTAATTGAGCACGGTGCTGACCTGGGTCTGCTGCAACATGATTTCCGACACCCACACCCg                                                           >  8:195240/1‑149 (MQ=255)                                                                                       cAAGGCCCGTCCACAGGTGCAGCACTTCGTCCTCCGGTGCCTCGGCCAGGGCTTGCACCGTTGGC‑AGGGCCTGCATGAAGCGGTCGAAGTAATTGAGCACGGTGCTGACCTGGGTCTGCTGCAACATGATTTCCGACACCCACACCCgg                                                          >  3:180126/1‑149 (MQ=255)                                                                                             ccGTCCACAGGTGCAGCACTTCGTCCTCCGGTGCCTCGGCCAGGGCTTGCACCGTTGGC‑AGGGCCTGCATGAAGCGGTCGAAGTAATTGAGCACGGTGCTGACCTGGGTCTGCTGCAACATGATTTCCGACACCCACACCCGGTACGGc                                                    >  3:195826/1‑149 (MQ=255)                                                                                             ccGTCCACAGGTGCAGCACTTCGTCCTCCGGTGCCTCGGCCAGGGCTTGCACCGTTGGC‑AGGGCCTGCATGAAGCGGTCGAAGTAATTGAGCACGGTGCTGACCTGGGTCTGCTGCAACATGATTTCCGACACCCACACCCGGTACGGc                                                    >  1:316795/1‑149 (MQ=255)                                                                                             ccGTCCACAGGTGCAGCACTTCGTCCTCCGGTGCCTCGGCCAGGGCTTGCACCGTTGGC‑AGGGCCTGCATGAAGCGGTCGAAGTAATTGAGCACGGTGCTGACCTGGGTCTGCTGCAACATGATTTCCGACACCCACACCCGGTACGGc                                                    >  7:250007/1‑149 (MQ=255)                                                                                                   acaGGTGCAGCACTTCGTCCTCCGGTGCCTCGGCCAGGGCTTGCACCGTTGGC‑AGGGCCTGCATGAAGCGGTCGAAGTAATTGAGCACGGTGCTGACCTGGGTCTGCTGCAACATGATTTCCGACACCCACACCCGGTACGGCGTGATg                                              >  7:217968/1‑149 (MQ=255)                                                                                                            gcaCTTCGTCCTCCGGTGCCTCGGCCAGGGCTTGCACCGTTGGC‑AGGGCCTGCATGAAGCGGTCGAAGTAATTGAGCACGGTGCTGACCTGGGTCTGCTGCAACATGATTTCCGacacccacacc                                                             <  2:200731/125‑1 (MQ=255)                                                                                                            gcaCTTCGTCCTCCGGTGCCTCGGCCAGGGCTTGCACCGTTGGC‑AGGGCCTGCATGAAGCGGTCGAAGTAATTGAGCACGGTGCTGACCTGGGTCTGCTGCAACATGATTTCCGacacccacacc                                                             >  1:200731/1‑125 (MQ=255)                                                                                                            gcaCTTCGTCCTCCGGTGCCTCGGCCAGGGCTTGCACCGTTGGC‑AGGGCCTGCATGAAGAGGTCGAAGTAATTGAGCACGGTGCTGACCTGGGTCTGCTGCAACATGATTTCCGACACCCACACCCGGTACGGCGTGATGCCCTGTTGc                                     >  1:281032/1‑149 (MQ=255)                                                                                                                ttCGTCCTCCGGTGCCTCGGCCAGGGCTTGCACCGTTGGC‑AGGGCCTGCATGAAGCGGTCGAAGTAATTGAGCACGGTGCTGACCTGGGTCTGCTGCAACATGATTTCCGACACCCACACCCGGTACGGCGTGATGCCCTGTTGCCAgg                                 >  1:294115/1‑149 (MQ=255)                                                                                                                 cctgccaacggtgcaagccctggccgaggcaccgTTGGC‑AGGGCCTGCATGAAGCGGTCGAAGTAATTGAGCACGGTGCTGACCTGGGTCTGCTGCAACATGATTTCCGACACCCA‑ACCCGGTACGGCg                                                   <  7:222804‑M2/95‑1 (MQ=255)                                                                                                                 cctgccaacggtgcaagccctggccgaggcaccgTTGGC‑AGGGCCTGCATGAAGCGGTCGAAGTAATTGAGCACGGTGCTGACCTGGGTCTGCTGCAACATGATTTCCGACACCCA‑ACCCGGTACGGCg                                                   >  8:222804‑M2/35‑129 (MQ=255)                                                                                                                   gTCCTCCGGTGCCTCGGCCAGGGCTTGCACCGTTGGC‑AGGGCCTGCATGAAGCGGTCGAAGTAATTGAGCACGGTGCTGACCTGGGTCTGCTGCAACATGATTTCCGACACCCACACCCGGTACGGCGTGATGCCCTGTTGCCAGGGCa                              <  1:35725/149‑1 (MQ=255)                                                                                                                    tcctccGGTGCCTCGGCCAGGGCTTGCACCGTTGGC‑AGGGCCTGCATGAAGCGGTCGAAGTAATTGAGCACGGTGCTGACCTGGGTCTGCTGCAACATGATTTCCGACACCCACACCCGGTACGGCGTGATGCCCTGTTGCCAGGGCAg                             <  2:316795/149‑1 (MQ=255)                                                                                                                      ctccGGTGCCTCGGCCAGGGCTTGCACCGTTGGC‑AGGGCCTGCATGAAGCGGTCGAAGTAATTGAGCACGGTGCTGACCTGGGTCTGCTGCAACATGATTTCCGACACCCACACCCGGTACGGCGTGATGCCCTGTTGCCAGGGCAGGt                           >  2:121199/1‑149 (MQ=255)                                                                                                                      caacggtgcaagccctggccgaggcaccgTTGGC‑AGGGCCTGCATGAAGCGGTCGAAGTAATTGAGCACGGTGCTGACCTGGGTCTGCTGCAACATGATTTcc                                                                         >  5:223050‑M2/30‑103 (MQ=255)                                                                                                                      caacggtgcaagccctggccgaggcaccgTTGGC‑AGGGCCTGCATGAAGCGGTCGAAGTAATTGAGCACGGTGCTGACCTGGGTCTGCTGCAACATGATTTcc                                                                         <  6:223050‑M2/74‑1 (MQ=255)                                                                                                                          GGTGCCTCGGCCAGGGCTTGCACCGTTGGC‑AGGGCCTGCATGAAGCGGTCGAAGTAATTGAGCACGGTGCTGACCTGGGTCTGCTGCAACATGATTTCCGACACCCACACCCGGTACGGCGTGATGCCCTGTTGCCAGGGCAGGTCGTg                       >  2:172882‑M1/1‑149 (MQ=255)                                                                                                                                tCGGCCAGGGCTTGCACCGTTGGC‑AGGGCCTGCATGAAGCGGTCGAAGTAATTGAGCACGGTGCTGACCTGGGTCTGCTGCAACATGATTTc                                                                          <  5:128065/92‑1 (MQ=255)                                                                                                                                tCGGCCAGGGCTTGCACCGTTGGC‑AGGGCCTGCATGAAGCGGTCGAAGTAATTGAGCACGGTGCTGACCTGGGTCTGCTGCAACATGATTTc                                                                          >  6:128065/1‑92 (MQ=255)                                                                                                                                    ccAGGGCTTGCACCGTTGGC‑AGGGCCTGCATGAAGCGGTCGAAGTAATTGAGCACGGTGCTGACCTGGGTCTGCTGCAACATGATTTCCGACACCCACACCCGGTACGGCGTGATGCCCTGTTGCCAGGGCAGGTCGTGCCGGCCGTGc             <  5:304155/149‑1 (MQ=255)                                                                                                                                      aGGGCTTGCACCGTTGGC‑AGGGCCTGCATGAAGCGGTCGAAGTAATTGAGCACGGTGCTGACCTGGGTCTGCTGCAACATGATTTCCGACACCCACACCCGGTACGGCGTGATGCCCTGTTGCCAGGGCAGGTCGTGCCGGCCGTGCTc           <  7:9860/149‑1 (MQ=255)                                                                                                                                        ggCTTGCACCGTTGGC‑AGGGCCTGCATGAAGCGGTCGAAGTAATTGAGCACGGTGCTGACCTGGGTCTGCTGCAACATGATTTCCGACACCCACACCCGGTACGGCGTGATGCCCTGTTGCCAGGGCAGGTCGTGCCGGCCGTGCTCGt         <  1:123834/149‑1 (MQ=255)                                                                                                                                          cTTGCACCGTTGGC‑AGGGCCTGCATGAAGCGGTCGAAGTAATTGAGCACGGTGCTGACCTGGGTCTGCTGCAACATGATTTCCGACACCCACACCCGGTACGGCGTGATGCCCAGTTGCCAGGGCAGGTCGTGCCGGCCGTGCTCGTCa       <  1:206570/149‑1 (MQ=255)                                                                                                                                               accgTTGGC‑AGGGCCTGCATGAAGCGGTCGAAGTAATTGAGCACGGTGCTGACCTGGGTCTGCTGCAACATGATTTCCGACACCCACACCCGGTACGGCGTGATGCCCTGTTGCCAGGGCAGGTCGTGCCGGCCGTGCTCGTCATACCa  <  8:250007‑M2/145‑1 (MQ=255)                                                                                                                                                   |                                                                                                                                                  CTCGACACTGCGCGGGAATTCGCCGCCATGTTGCTCGACGACGACCTTGGCGGCCTTTTGCAGGTTGCGTGCGCGGGTGTAGTAGCCAAGGCCCGTCCACAGGTGCAGCACTTCGTCCTCCGGTGCCTCGGCCAGGGCTTGCACCGTTGGC‑AGGGCCTGCATGAAGCGGTCGAAGTAATTGAGCACGGTGCTGACCTGGGTCTGCTGCAACATGATTTCCGACACCCACACCCGGTACGGCGTGATGCCCTGTTGCCAGGGCAGGTCGTGCCGGCCGTGCTCGTCATACCA  >  NC_002947/345276‑345566

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.