New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	670029 =	33 (0.670)	4 (0.090)	3/244	NT	10.2%	coding (1471/2355 nt)	pbpC	peptidoglycan glycosyltransferase
	?	NC_002947	670078 =	39 (0.830)					coding (1520/2355 nt)	pbpC	peptidoglycan glycosyltransferase

CTGGGCGGTGCCGGCAGCCGGCTGGAGGACCTGGTCGGCGGCTACGCGGCGCTGGCGCGGGGTGGCAACAGTGCGCAGGTGCGCTTGCAGCCACAGGCCCCCCTGGTGGAGCACCGGTTGCTGTCACCGGGGGCGGCGTGGATCATCCGGCGTATTCTCAGCGGCCAGGCGCGCCCGGACCGCGACCCGCACGCCGAACTGGTGCAGCGCCCGCTACTGGCCTGGAAAACCGGCACCAGCTACGGCTTTCGCGATGCCTGGTCGATTGGCGTGGGGCCGCGCTACCTGATC  >  NC_002947/669882‑670172                                                                                                                                                    |                                                                                                                                                cTGCGCGGGGCCGGCAGCCTGCTGGAGGACCGGGGCGGCGGCTACGCGGCGCTGGCGCGGGGGGGCAACAGTGCGCAGGGGCGCGTGCAGCCACAGGCCCCCCTGGTGGAGCACCGGTTGCTGTCACCGGGGGCGGCGTGGATCATCCg                                                                                                                                                <  6:237281/149‑1 (MQ=255)    ggCGGTGCCGGCAGCCGGCTGGAGGACCTGGTCGGCGGCTACGCGGCGCTGGCGCGGGGTGGCAACAGTGCGCAGGTGCGCTTGCAGTCACAGGCCCCCCTGGTGGAGCACCGGTTTCTGTCACCGGGGGCGGCGTGGATCTTCCgg                                                                                                                                               <  1:216138/147‑1 (MQ=255)    ggCGGTGCCGGCAGCCGGCTGGAGGACCTGGTCGGCGGCTACGCGGCGCTGGCGCGGGGTGGCAACAGTGCGCAGGTGCGCTTGCAGCCACAGGCCCCCCTGGTGGAGCACCGGTTGCTGTCACCGGGGGCGGCGTGGATCATCCGGc                                                                                                                                              <  2:44369/148‑1 (MQ=255)         tgcccaggcaccggtgtaccgtcggggcggccaatccatatgccgatcaggtagcgcggccccacgccaatcgaccaggcatcgcgaaagccgtagctggtgccggttttccaggccagtagcgggcgctgcaccagttc                                                                                                                                                 <  8:102766‑M1/1‑1 (MQ=255)         tgcccaggcaccggtgtaccgtcggggcggccaatccatatgccgatcaggtagcgcggccccacgccaatcgaccaggcatcgcgaaagccgtagctggtgccggttttccaggccagtagcgggcgctgcaccagttc                                                                                                                                                 >  7:102766‑M1/140‑140 (MQ=255)             ggCAGCCGGCTGGAGGACCTGGTCGGCGGCTACGCGGCGCTGGCGCGGGGTGGCAACAGTGCGCAGGTGCGCTTGCAGCCACAGGCCCCCCTGGTGGAGCACCGGTTGCTGTCACCGGGGGCGGCGTGGATCATCCGGCGTATTCTCAg                                                                                                                                    <  2:52512/149‑1 (MQ=255)                    ggCTGGAGGACCTGGTCGGCGGCTACGCGGCGCTGGCGCGGGGTGGCAACAGTGCGCAGGTGCGCTTGCAGCCACAGGCCCCCCTGGTGGAGCACCGGTTGCTGTCACCGGGGGCGGCGTGGATCATCCGGCGTATTCTCAGCGGCCAg                                                                                                                             >  7:248729/1‑149 (MQ=255)                      cTGGAGGACCTGGTCGGCGGCTACGCGGCGCTGGCGCGGGGTGGCAACAGTGCGCAGGTGCGCTTGCAGCCACAGGCCCCCCTGGTGGAGCACCGGTTGCTGTCACCGGGGGCGTCGTGGATCATCCGGCGTATTCTCAGCGGCCAGgc                                                                                                                           <  2:130194/149‑1 (MQ=255)                      cTGGAGGACCTGGTCGGCGGCTACGCGGCGCTGGCGCGGGGTGGCAACAGTGCGCAGGTGCGCTTGCAGCCACAGGCCCCCCTGGTGGAGCACCGGTTGCTGTCACCGGGGGCGGCGTGGATCATCCGGCGTATTCTCAGCGGCCAGgc                                                                                                                           <  8:248729/149‑1 (MQ=255)                         gaggaCCTGGTCGGCGGCTACGCGGCGCTGGCGCGGGGTGGCAACAGTGCGCAGGTGCGCTTGCAGCCACAGGCCCCCCTGGTGGAGCACCGGTTGCTGTCACCGGGGGCGGCGTGGATCATCCGGCGTATTCTCAGCGGCCAGgcgcg                                                                                                                        >  8:9036/1‑149 (MQ=255)                                ggggcggccaatccatacgccgatcaggtagcgcggccccacgccaatcgaccaggcatcgcgaaagccgtagctggtgccggttttccaggccagtagcgggcgctgcaccagttCGGc                                                                                                                                              <  2:100222‑M1/4‑1 (MQ=255)                                ggggcggccaatccatacgccgatcaggtagcgcggccccaccccaatcgaccaggcatcgcgaaagccgtagctggtgccggttttccaggccagtagcgggcgctgcaccagttCGGc                                                                                                                                              >  1:100222‑M1/117‑120 (MQ=255)                                           tACGCGGCGCTGGCGCGGGGTGGCAACAGTGCGCAGGTGCGCTTGCAGCCACAGGCCCCCCTGGTGGAGCACCGGTTGCTGTCACCGGGGGCGGCGTGGATCATCCGGCGTATTCTCAGCGGCCAGGCGCGCCCGGACCGCGACCCGCa                                                                                                      >  3:123249/1‑149 (MQ=255)                                                  gccgatcaggtagcgcggccccacgccaatcgaccaggcatcgcgaaagccgtagctggtgccggttttccaggccagtagcgggcgctgcaccagttCGGCGTATTCTCAGCGGCCAGGCGCGCCCGGACCGCGACCCGCACGCCGaa                                                                                               >  1:33582‑M1/99‑149 (MQ=255)                                                   ccgatcaggtagcgcggccccacgccaatcgaccaggcatcgcgaaagccgtagctggtgccggttttccaggccagtagcgggcgctgcaccagttCGGCGTATTCTCAGCGGCCAGGCGCGCCCGGACCGCGACCCGCACGCCGAAc                                                                                              >  7:83107‑M1/98‑149 (MQ=255)                                                            gggTGGCAACAGTGCGCAGGTGCGCTTGCAGCCACAGGCCCCCCTGGTGGAGCACCGGTTGCTGTCACCGGGGGCGGCGTGGATCATCCGGCGTATTCTCAGCGGCCAGGCGCGCCCGGACCGCGACCCGCACGCCGAACTGGTGCAgc                                                                                     <  4:123249/149‑1 (MQ=255)                                                                     cAGTGCGCAGGTGCGCTTGCAGCCACAGGCCCCCCTGGTGGAGCACCGGTTGCTGTCACCGGGGGCGGCGTGGATCATCCGGCGTATTCTCAGCGGCCAGGCGCGCCCGGACCGCGACCCGCACGCCGAACTGGTGCAGCGCCCGCTAc                                                                            <  7:9036/149‑1 (MQ=255)                                                                      ccacgccaatcgaccaggcatcgcgaaagccgtagctggtgccggttttccaggccagtagcgggcgctgcaccagttCGGCGTATTCTCAGCGGCCAGGCGCGCCCGGACCGCGACCCGCACGCCGAAc                                                                                              >  5:93285‑M1/79‑130 (MQ=255)                                                                      ccacgccaatcgaccaggcatcgcgaaagccgtagctggtgccggttttccaggccagtagcgggcgctgcaccagttCGGCGTATTCTCAGCGGCCAGGCGCGCCCGGACCGCGACCCGCACGCCGAAc                                                                                              <  6:93285‑M1/52‑1 (MQ=255)                                                                           gcAGGTGCGCTTGCAGCCACAGGCCCCCCTGGTGGAGCACCGGTTGCTGTCACCGGGGGCGGCGTGGATCATCCGGCGTATTCTCAGCGGCCAGGCGCGCCCGGACCGCGACCCGCACGc                                                                                                   <  7:152927/120‑1 (MQ=255)                                                                           gcAGGTGCGCTTGCAGCCACAGGCCCCCCTGGTGGAGCACCGGTTGCTGTCACCGGGGGCGGCGTGGATCATCCGGCGTATTCTCAGCGGCCAGGCGCGCCCGGACCGCGACCCGCACGc                                                                                                   >  8:152927/1‑120 (MQ=255)                                                                             aGGTGCGCTTGCAGCCACAGGCCCCCCTGGTGGAGCACCGGTTGCTGTCACCGGGGGCGGCGTGGATCATCCGGCGTATTCTCAGCGGCCAGGCGCGCCCGGACCGCGACCCGCACGCCGAACTGGTGCAGCGCCCGCTACTGGCCTg                                                                     >  4:126718/1‑148 (MQ=255)                                                                                       gCAGCCACAGGCCCCCCTGGTGGAGCACCGGTTGCTGTCACCGGGGGCGGCGTGGATCATCCGGCGTATTCTCAGCGGCCAGGCGCGCCCGGACCGCGACCCGCACGCCGAACTGGTGCAGCGCCCg                                                                                <  4:157216/127‑1 (MQ=255)                                                                                       gCAGCCACAGGCCCCCCTGGTGGAGCACCGGTTGCTGTCACCGGGGGCGGCGTGGATCATCCGGCGTATTCTCAGCGGCCAGGCGCGCCCGGACCGCGACCCGCACGCCGAACTGGTGCAGCGCCCg                                                                                >  3:157216/1‑127 (MQ=255)                                                                                       gCAGCCACAGGCCCCCCTGGTGGAGCACCGGTTGCTGTCACCGGGGGCGGCGTGGATCATCCGGCGTATTCTCAGCGGCCAGGCGCGCCCGGACCGCGACCCGCACGCCGAACTGGTGCAGCGCCCGCTACTGGCCTGGAAAACCGGc                                                           <  6:22984/148‑1 (MQ=255)                                                                                             acaGGCCCCCCTGGTGGAGCACCGGTTGCTGTCACCGGGGGCGGCGTGGATCATCCGGCGTATTCTCAGCGGCCAGGCGCGCCCGGACCGCGACCCGCACGCCGAACTGGTGCAGCGCCCGCTACTGGCCTGGAAAACCGGCACCAGc                                                     >  4:149930/1‑148 (MQ=255)                                                                                             acaGGCCCCCCTGGTGGAGCACCGGTTGCTGTCACCGGGGGCGGCGTGGATCATCCGGCGTATTCTCAGCGGCCAGGCGCGCCCGGACCGCGACCCGCACGCCGAACTGGTGCAGCGCCCGCTACTGGCCTGGAAAACCGGCACCAGc                                                     >  7:107871/1‑148 (MQ=255)                                                                                                          gtggAGCACCGGTTGCTGTCACCGGGGGCGGCGTGGATCATCCGGCGTATTCTCAGCGGCCAGGCGCGCCCGGACcgc                                                                                                              <  4:92316/78‑1 (MQ=255)                                                                                                          gtggAGCACCGGTTGCTGTCACCGGGGGCGGCGTGGATCATCCGGCGTATTCTCAGCGGCCAGGCGCGCCCGGACcgc                                                                                                              >  3:92316/1‑78 (MQ=255)                                                                                                          gtggAGCACCGGTTGCTGTCACCGGGGGCGGCGTGGATCATCCGGCGTATTCTCAGCGGCCAGGCGCGCCCGGACCGCGACCCGCACGCCGAACTGGTGCAGCGCCCGCTACTGGCCTGGAAAACCGGCACCAGCTACGGCTTTcgc                                         <  3:42448/147‑1 (MQ=255)                                                                                                               gCACCGGTTGCTGTCACCGGGGGCGGCGTGGATCATCCGGCGTATTCTCAGCGGCCAGGCGCGCCCGGACCGCGACCCGCACGCCGAACTGGTGCAGCGCCCGCt                                                                              <  5:93455/105‑1 (MQ=255)                                                                                                               gCACCGGTTGCTGTCACCGGGGGCGGCGTGGATCATCCGGCGTATTCTCAGCGGCCAGGCGCGCCCGGACCGCGACCCGCACGCCGAACTGGTGCAGCGCCCGCt                                                                              >  6:93455/1‑105 (MQ=255)                                                                                                                     gTTGCTGTCACCGGGGGCGGCGTGGATCATCCGGCGTATTCTCAGCGGCCAGGCGCGCCCGGACCGCGACCCGCACGCCGAACTGGTGCAGCGCCCGCTACTGGCCTGGAAAACCGGCACCAGCTACGGCTTTCGCGATGCGTGGTCGa                            >  8:209153/1‑149 (MQ=255)                                                                                                                          tGTCACCGGGGGCGGCGTGGATCATCCGGCGTATTCTCAGCGGCCAGGCGCGCCCGGACCGCGACCCGCACGCCGAACTGGTGCAGCGCCCGCTACTGGCCTGGAAAACCGGCACCAGCTACGGCTTTCGCGATGCCTGGt                               <  3:259190/141‑1 (MQ=255)                                                                                                                          tGTCACCGGGGGCGGCGTGGATCATCCGGCGTATTCTCAGCGGCCAGGCGCGCCCGGACCGCGACCCGCACGCCGAACTGGTGCAGCGCCCGCTACTGGCCTGGAAAACCGGCACCAGCTACGGCTTTCGCGATGCCTGGt                               >  4:259190/1‑141 (MQ=255)                                                                                                                          tGTCACCGGGGGCGGCGTGGATCATCCGGCGTATTCTCAGCGGCCAGGCGCGCCCGGACCGCGACCCGCACGCCGAACTGGTGCAGCGCCCGCTACTGGCCTGGAAAACCGGCACCAGCTACGGCTTTCGCGATGCCTGGTCGATTGGc                       >  8:12815/1‑149 (MQ=255)                                                                                                                            tCACCGGGGGCGGCGTGGATCATCCGGCGTATTCTCAGCGGCCAGGCGCGCCCGGACCGCGACCCGCACGCCGAACTGGTGCAGCGCCCGCTACTGGCCTGGAAAACCGGCACCAGCTACGGCTTTCGCGATGCCTGGTCGATTGGCGt                     >  1:59079/1‑149 (MQ=255)                                                                                                                                        gcgTGGATCATCCGGCGTATTCTCAGCGGCCAGGCGCGCCCGGACCGCGACCCGCACGCCGAACTGGTGCAGCGCCCGCTACTGGCCTGGAAAACCGGCACCAGCTACGGCTTTCGCGATGCCTgg                                >  4:21060/1‑126 (MQ=255)                                                                                                                                        gcgTGGATCATCCGGCGTATTCTCAGCGGCCAGGCGCGCCCGGACCGCGACCCGCACGCCGAACTGGTGCAGCGCCCGCTACTGGCCTGGAAAACCGGCACCAGCTACGGCTTTCGCGATGCCTgg                                <  3:21060/126‑1 (MQ=255)                                                                                                                                        gcgTGGATCATCCGGCGTATTCTCAGCGGCCAGGCGCGCCCGGACCGCGACCCGCACGCCGAACTGGTGCAGCGCCCGCTACTGGCCTGGAAAACCGGCACCAGCTACGGCTTTCGCGATGCCTGGTCGATTGGCGTGGGGCCGCGCTa         <  6:135202/149‑1 (MQ=255)                                                                                                                                        gcgTGGATCATCCGGCGTATTCTCAGCGGCCAGGCGCGCCCGGACCGCGACCCGCACGCCGAACTGGTGCAGCGCCCGCTACTGGCCTGGAAAACCGGCACCAGCTACGGCTTTCGCGATGCCTGGTCGATTGGCGTGGGGCCGCGCTa         >  8:150604/1‑149 (MQ=255)                                                                                                                                         cgTGGATCATCCGGCGTATTCTCAGCGGCCAGGCGCGCCCGGACCGCGACCCGCACGCCGAACTGGTGCAGCGCCCGCTACTGGCCTGGAAAACCGGCACCAGCTACGGCTTTCGCGATGCCTGGTCGATTGGCGTGGGGCCGCGCTAc        <  7:150604/149‑1 (MQ=255)                                                                                                                                             gATCATCCGGCGTATTCTCAGCGGCCAGGCGCGCCCGGACCGCGACCCGCACGCCGAACTGGTGCAGCGCCCGCTACTGGCCTGGAAAACCGGCACCAGCTACGGCTTTCGCGATGCCTGGTCGATTGGCGTGGGGCCGCGCTACCTGa    >  3:185628/1‑149 (MQ=255)                                                                                                                                              atcatcCGGCGTATTCTCAGCGGCCAGGCGCGCCCGGACCGCGACCCGCACGCCGAACTGGTGCAGCGCCCGCTACTGGCCTGGAAAACCGGCACCAGCTACGGCTTTCGCGATGCCTGGTCGATTGGCGTGGGGCCGCGCTACCTGAt   <  8:107871/149‑1 (MQ=255)                                                                                                                                               tcatcCGGCGTATTCTCAGCGGCCAGGCGCGCCCGGACCGCGACCCGCACGCCGAACTGGTGCAGCGCCCGCTACTGGCCTGGAAAACCGGCACCAGCTACGGCTTTCGCGATGCCTGGTCGATTGGCGTGGGGCCGCGCTACCTGATc  >  7:231005/1‑149 (MQ=255)                                                                                                                                                  tcCGGCGTATTCTCAGCGGCCAGGCGCGCCCGGACCGCGACCCGCACGCCGAACTGGTGCAGCGCCCGCTACTGGCCTGGAAAACCGGCACCAGCTACGGCTTTCGCGATGCCTGGTCGATTGGCGTGGGGCcgc             <  2:119416/135‑1 (MQ=255)                                                                                                                                                  tcCGGCGTATTCTCAGCGGCCAGGCGCGCCCGGACCGCGACCCGCACGCCGAACTGGTGCAGCGCCCGCTACTGGCCTGGAAAACCGGCACCAGCTACGGCTTTCGCGATGCCTGGTCGATTGGCGTGGGGCcgc             >  1:119416/1‑135 (MQ=255)                                                                                                                                                    |                                                                                                                                                CTGGGCGGTGCCGGCAGCCGGCTGGAGGACCTGGTCGGCGGCTACGCGGCGCTGGCGCGGGGTGGCAACAGTGCGCAGGTGCGCTTGCAGCCACAGGCCCCCCTGGTGGAGCACCGGTTGCTGTCACCGGGGGCGGCGTGGATCATCCGGCGTATTCTCAGCGGCCAGGCGCGCCCGGACCGCGACCCGCACGCCGAACTGGTGCAGCGCCCGCTACTGGCCTGGAAAACCGGCACCAGCTACGGCTTTCGCGATGCCTGGTCGATTGGCGTGGGGCCGCGCTACCTGATC  >  NC_002947/669882‑670172

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.