New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	670029 =	33 (0.670)	4 (0.090)	3/244	NT	10.2%	coding (1471/2355 nt)	pbpC	peptidoglycan glycosyltransferase
	?	NC_002947	670078 =	39 (0.830)					coding (1520/2355 nt)	pbpC	peptidoglycan glycosyltransferase

CGCTGGCGCGGGGTGGCAACAGTGCGCAGGTGCGCTTGCAGCCACAGGCCCCCCTGGTGGAGCACCGGTTGCTGTCACCGGGGGCGGCGTGGATCATCCGGCGTATTCTCAGCGGCCAGGCGCGCCCGGACCGCGACCCGCACGCCGAACTGGTGCAGCGCCCGCTACTGGCCTGGAAAACCGGCACCAGCTACGGCTTTCGCGATGCCTGGTCGATTGGCGTGGGGCCGCGCTACCTGATCGGCGTATGGATTGGCCGCCCCGACGGTACACCGGTGCCTGGGCA  >  NC_002947/669931‑670216                                                                                                                                                    |                                                                                                                                           gccgatcaggtagcgcggccccacgccaatcgaccaggcatcgcgaaagccgtagctggtgccggttttccaggccagtagcgggcgctgcaccagttCGGCGTATTCTCAGCGGCCAGGCGCGCCCGGACCGCGACCCGCACGCCGaa                                                                                                                                           >  1:33582‑M1/99‑149 (MQ=255)  ccgatcaggtagcgcggccccacgccaatcgaccaggcatcgcgaaagccgtagctggtgccggttttccaggccagtagcgggcgctgcaccagttCGGCGTATTCTCAGCGGCCAGGCGCGCCCGGACCGCGACCCGCACGCCGAAc                                                                                                                                          >  7:83107‑M1/98‑149 (MQ=255)           gggTGGCAACAGTGCGCAGGTGCGCTTGCAGCCACAGGCCCCCCTGGTGGAGCACCGGTTGCTGTCACCGGGGGCGGCGTGGATCATCCGGCGTATTCTCAGCGGCCAGGCGCGCCCGGACCGCGACCCGCACGCCGAACTGGTGCAgc                                                                                                                                 <  4:123249/149‑1 (MQ=255)                    cAGTGCGCAGGTGCGCTTGCAGCCACAGGCCCCCCTGGTGGAGCACCGGTTGCTGTCACCGGGGGCGGCGTGGATCATCCGGCGTATTCTCAGCGGCCAGGCGCGCCCGGACCGCGACCCGCACGCCGAACTGGTGCAGCGCCCGCTAc                                                                                                                        <  7:9036/149‑1 (MQ=255)                     ccacgccaatcgaccaggcatcgcgaaagccgtagctggtgccggttttccaggccagtagcgggcgctgcaccagttCGGCGTATTCTCAGCGGCCAGGCGCGCCCGGACCGCGACCCGCACGCCGAAc                                                                                                                                          <  6:93285‑M1/52‑1 (MQ=255)                     ccacgccaatcgaccaggcatcgcgaaagccgtagctggtgccggttttccaggccagtagcgggcgctgcaccagttCGGCGTATTCTCAGCGGCCAGGCGCGCCCGGACCGCGACCCGCACGCCGAAc                                                                                                                                          >  5:93285‑M1/79‑130 (MQ=255)                            aGGTGCGCTTGCAGCCACAGGCCCCCCTGGTGGAGCACCGGTTGCTGTCACCGGGGGCGGCGTGGATCATCCGGCGTATTCTCAGCGGCCAGGCGCGCCCGGACCGCGACCCGCACGCCGAACTGGTGCAGCGCCCGCTACTGGCCTg                                                                                                                 >  4:126718/1‑148 (MQ=255)                                      gCAGCCACAGGCCCCCCTGGTGGAGCACCGGTTGCTGTCACCGGGGGCGGCGTGGATCATCCGGCGTATTCTCAGCGGCCAGGCGCGCCCGGACCGCGACCCGCACGCCGAACTGGTGCAGCGCCCg                                                                                                                            <  4:157216/127‑1 (MQ=255)                                      gCAGCCACAGGCCCCCCTGGTGGAGCACCGGTTGCTGTCACCGGGGGCGGCGTGGATCATCCGGCGTATTCTCAGCGGCCAGGCGCGCCCGGACCGCGACCCGCACGCCGAACTGGTGCAGCGCCCg                                                                                                                            >  3:157216/1‑127 (MQ=255)                                      gCAGCCACAGGCCCCCCTGGTGGAGCACCGGTTGCTGTCACCGGGGGCGGCGTGGATCATCCGGCGTATTCTCAGCGGCCAGGCGCGCCCGGACCGCGACCCGCACGCCGAACTGGTGCAGCGCCCGCTACTGGCCTGGAAAACCGGc                                                                                                       <  6:22984/148‑1 (MQ=255)                                            acaGGCCCCCCTGGTGGAGCACCGGTTGCTGTCACCGGGGGCGGCGTGGATCATCCGGCGTATTCTCAGCGGCCAGGCGCGCCCGGACCGCGACCCGCACGCCGAACTGGTGCAGCGCCCGCTACTGGCCTGGAAAACCGGCACCAGc                                                                                                 >  7:107871/1‑148 (MQ=255)                                            acaGGCCCCCCTGGTGGAGCACCGGTTGCTGTCACCGGGGGCGGCGTGGATCATCCGGCGTATTCTCAGCGGCCAGGCGCGCCCGGACCGCGACCCGCACGCCGAACTGGTGCAGCGCCCGCTACTGGCCTGGAAAACCGGCACCAGc                                                                                                 >  4:149930/1‑148 (MQ=255)                                                         gtggAGCACCGGTTGCTGTCACCGGGGGCGGCGTGGATCATCCGGCGTATTCTCAGCGGCCAGGCGCGCCCGGACCGCGACCCGCACGCCGAACTGGTGCAGCGCCCGCTACTGGCCTGGAAAACCGGCACCAGCTACGGCTTTcgc                                                                                     <  3:42448/147‑1 (MQ=255)                                                              gCACCGGTTGCTGTCACCGGGGGCGGCGTGGATCATCCGGCGTATTCTCAGCGGCCAGGCGCGCCCGGACCGCGACCCGCACGCCGAACTGGTGCAGCGCCCGCt                                                                                                                          <  5:93455/105‑1 (MQ=255)                                                              gCACCGGTTGCTGTCACCGGGGGCGGCGTGGATCATCCGGCGTATTCTCAGCGGCCAGGCGCGCCCGGACCGCGACCCGCACGCCGAACTGGTGCAGCGCCCGCt                                                                                                                          >  6:93455/1‑105 (MQ=255)                                                                    gTTGCTGTCACCGGGGGCGGCGTGGATCATCCGGCGTATTCTCAGCGGCCAGGCGCGCCCGGACCGCGACCCGCACGCCGAACTGGTGCAGCGCCCGCTACTGGCCTGGAAAACCGGCACCAGCTACGGCTTTCGCGATGCGTGGTCGa                                                                        >  8:209153/1‑149 (MQ=255)                                                                         tGTCACCGGGGGCGGCGTGGATCATCCGGCGTATTCTCAGCGGCCAGGCGCGCCCGGACCGCGACCCGCACGCCGAACTGGTGCAGCGCCCGCTACTGGCCTGGAAAACCGGCACCAGCTACGGCTTTCGCGATGCCTGGt                                                                           <  3:259190/141‑1 (MQ=255)                                                                         tGTCACCGGGGGCGGCGTGGATCATCCGGCGTATTCTCAGCGGCCAGGCGCGCCCGGACCGCGACCCGCACGCCGAACTGGTGCAGCGCCCGCTACTGGCCTGGAAAACCGGCACCAGCTACGGCTTTCGCGATGCCTGGt                                                                           >  4:259190/1‑141 (MQ=255)                                                                         tGTCACCGGGGGCGGCGTGGATCATCCGGCGTATTCTCAGCGGCCAGGCGCGCCCGGACCGCGACCCGCACGCCGAACTGGTGCAGCGCCCGCTACTGGCCTGGAAAACCGGCACCAGCTACGGCTTTCGCGATGCCTGGTCGATTGGc                                                                   >  8:12815/1‑149 (MQ=255)                                                                           tCACCGGGGGCGGCGTGGATCATCCGGCGTATTCTCAGCGGCCAGGCGCGCCCGGACCGCGACCCGCACGCCGAACTGGTGCAGCGCCCGCTACTGGCCTGGAAAACCGGCACCAGCTACGGCTTTCGCGATGCCTGGTCGATTGGCGt                                                                 >  1:59079/1‑149 (MQ=255)                                                                                       gcgTGGATCATCCGGCGTATTCTCAGCGGCCAGGCGCGCCCGGACCGCGACCCGCACGCCGAACTGGTGCAGCGCCCGCTACTGGCCTGGAAAACCGGCACCAGCTACGGCTTTCGCGATGCCTgg                                                                            <  3:21060/126‑1 (MQ=255)                                                                                       gcgTGGATCATCCGGCGTATTCTCAGCGGCCAGGCGCGCCCGGACCGCGACCCGCACGCCGAACTGGTGCAGCGCCCGCTACTGGCCTGGAAAACCGGCACCAGCTACGGCTTTCGCGATGCCTgg                                                                            >  4:21060/1‑126 (MQ=255)                                                                                       gcgTGGATCATCCGGCGTATTCTCAGCGGCCAGGCGCGCCCGGACCGCGACCCGCACGCCGAACTGGTGCAGCGCCCGCTACTGGCCTGGAAAACCGGCACCAGCTACGGCTTTCGCGATGCCTGGTCGATTGGCGTGGGGCCGCGCTa                                                     >  8:150604/1‑149 (MQ=255)                                                                                       gcgTGGATCATCCGGCGTATTCTCAGCGGCCAGGCGCGCCCGGACCGCGACCCGCACGCCGAACTGGTGCAGCGCCCGCTACTGGCCTGGAAAACCGGCACCAGCTACGGCTTTCGCGATGCCTGGTCGATTGGCGTGGGGCCGCGCTa                                                     <  6:135202/149‑1 (MQ=255)                                                                                        cgTGGATCATCCGGCGTATTCTCAGCGGCCAGGCGCGCCCGGACCGCGACCCGCACGCCGAACTGGTGCAGCGCCCGCTACTGGCCTGGAAAACCGGCACCAGCTACGGCTTTCGCGATGCCTGGTCGATTGGCGTGGGGCCGCGCTAc                                                    <  7:150604/149‑1 (MQ=255)                                                                                            gATCATCCGGCGTATTCTCAGCGGCCAGGCGCGCCCGGACCGCGACCCGCACGCCGAACTGGTGCAGCGCCCGCTACTGGCCTGGAAAACCGGCACCAGCTACGGCTTTCGCGATGCCTGGTCGATTGGCGTGGGGCCGCGCTACCTGa                                                >  3:185628/1‑149 (MQ=255)                                                                                             atcatcCGGCGTATTCTCAGCGGCCAGGCGCGCCCGGACCGCGACCCGCACGCCGAACTGGTGCAGCGCCCGCTACTGGCCTGGAAAACCGGCACCAGCTACGGCTTTCGCGATGCCTGGTCGATTGGCGTGGGGCCGCGCTACCTGAt                                               <  8:107871/149‑1 (MQ=255)                                                                                              tcatcCGGCGTATTCTCAGCGGCCAGGCGCGCCCGGACCGCGACCCGCACGCCGAACTGGTGCAGCGCCCGCTACTGGCCTGGAAAACCGGCACCAGCTACGGCTTTCGCGATGCCTGGTCGATTGGCGTGGGGCCGCGCTACCTGATc                                              >  7:231005/1‑149 (MQ=255)                                                                                                gttcggcgtgcgggtcgcggtccgggcgcgcctggccgctgagaatacgccgAACTGGTGCAGCGCCCGCTACTGGCCTGGAAAACCGGCACCAGCTACGGCTTTCGCGATGCCTGGTCGATTGGCGTgg                                                               >  5:93285‑M2/53‑130 (MQ=255)                                                                                                gttcggcgtgcgggtcgcggtccgggcgcgcctggccgctgagaatacgccgAACTGGTGCAGCGCCCGCTACTGGCCTGGAAAACCGGCACCAGCTACGGCTTTCGCGATGCCTGGTCGATTGGCGTgg                                                               <  6:93285‑M2/78‑1 (MQ=255)                                                                                                gttcggcgtgcgggtcgcggtccgggcgcgcctggccgctgagaatacgccgAACTGGTGCAGCGCCCGCTACTGGCCTGGAAAACCGGCACCAGCTACGGCTTTCGCGATGCCTGGTCGATTGGCGTGGGGCCGCGCTACCTGATCgg                                            >  7:83107‑M2/53‑149 (MQ=255)                                                                                                 ttcggcgtgcgggtcgcggtccgggcgcgcctggccgctgagaatacgccgAACTGGTGCAGCGCCCGCTACTGGCCTGGAAAACCGGCACCAGCTACGGCTTTCGCGATGCCTGGTCGATTGGCGTGGGGCCGCGCTACCTGATCGGc                                           >  1:33582‑M2/52‑149 (MQ=255)                                                                                                 tcCGGCGTATTCTCAGCGGCCAGGCGCGCCCGGACCGCGACCCGCACGCCGAACTGGTGCAGCGCCCGCTACTGGCCTGGAAAACCGGCACCAGCTACGGCTTTCGCGATGCCTGGTCGATTGGCGTGGGGCcgc                                                         >  1:119416/1‑135 (MQ=255)                                                                                                 tcCGGCGTATTCTCAGCGGCCAGGCGCGCCCGGACCGCGACCCGCACGCCGAACTGGTGCAGCGCCCGCTACTGGCCTGGAAAACCGGCACCAGCTACGGCTTTCGCGATGCCTGGTCGATTGGCGTGGGGCcgc                                                         <  2:119416/135‑1 (MQ=255)                                                                                                          ttCTCAGCGGCCAGGCGCGCCCGGACCGCGACCCGCACGCCGAACTGGTGCAGCGCCCGCTACTGGCCTGGAAAACCGGCACCAGCTACGGCTTTCGCGATGCCTGGTCGATTGGCGTGGGGCCGCGCTACCTGATCGGCGTATGGAt                                   <  7:283841/148‑1 (MQ=255)                                                                                                           tctcAGCGGCCAGGCGCGCCCGGACCGCGACCCGCACGCCGAACTGGTGCAGCGCCCGCTACTGGCCTGGAAAACCGGCACCAGCAACGGCTTTCGCGATGCCTGGTGGATTGGCGTGGGGCCGCGCTACCGGATCGGCGTATGGATTg                                 >  1:235552/1‑149 (MQ=255)                                                                                                               aGCGGCCAGGCGCGCCCGGACCGCGACCCGCACGCCGAACTGGTGCAGCGCCCGCTACTGGCCTGGAAAACCGGCACCAGCTACGGCTTTCGCGATGCCTGGTCGATTGGCGTGGGGCCGCGCTAcc                                                   <  2:267648/127‑1 (MQ=255)                                                                                                               aGCGGCCAGGCGCGCCCGGACCGCGACCCGCACGCCGAACTGGTGCAGCGCCCGCTACTGGCCTGGAAAACCGGCACCAGCTACGGCTTTCGCGATGCCTGGTCGATTGGCGTGGGGCCGCGCTACCTGATCGGCGTATGGATTGgcc                              <  2:59079/148‑1 (MQ=255)                                                                                                               aGCGGCCAGGCGCGCCCGGACCGCGACCCGCACGCCGAACTGGTGCAGCGCCCGCTACTGGCCTGGAAAACCGGCACCAGCTACGGCTTTCGCGATGCCTGGTCGATTGGCGTGGGGCCGCGCTACCTGATCGGCGTATGGATTGgc                               <  7:89033/147‑1 (MQ=255)                                                                                                                   gCCAGGCGCGCCCGGACCGCGACCCGCACGCCGAACTGGTGCAGCGCCCGCTACTGGCCTGGAAAACCGGCACCAGCTACGGCTTTCGCGATGCCTgg                                                                            <  4:74066/98‑1 (MQ=255)                                                                                                                   gCCAGGCGCGCCCGGACCGCGACCCGCACGCCGAACTGGTGCAGCGCCCGCTACTGGCCTGGAAAACCGGCACCAGCTACGGCTTTCGCGATGCCTgg                                                                            >  3:74066/1‑98 (MQ=255)                                                                                                                     cAGGCGCGCCCGGACCGCGACCCGCACGCCGAACTGGTGCAGCGCCCGCTACTGGCCTGGAAAACCGGCACCAGCTACGGCTTTCGCGATGCCTGGTCGATTGGCGTGGGGCCGCGCTACCTGATCGGCGTATGGATTGGCCGCCCCGa                       >  6:89053/1‑149 (MQ=255)                                                                                                                       ggCGCGCCCGGACCGCGACCCGCACGCCGAACTGGTGCAGCGCCCGCTACTGGCCTGGAAAACCGGCACCAGCTACGGCTTTCGCGATGCCTGGTCGATTGGCGTGGGGCCGCGCTACCTGATCGGCGTATGGATTGGCCGCCCCGACg                     <  3:126718/149‑1 (MQ=255)                                                                                                                          gcgcCCGGACCGCGACCCGCACGCCGAACTGGTGCAGCGCCCGCTACTGGCCTGGAAAACCGGCACCAGCTACGGCTTTCGCGATGCCTGGTCGATTGGCGTGGGGCCGCGCTACCTGATCGGCGTATGGATTGGCCGCCCCGACGGTa                  >  5:219959/1‑149 (MQ=255)                                                                                                                                    cgcgACCCGCACGCCGAACTGGTGCAGCGCCCGCTACTGGCCTGGAAAACCGGCTCCAGCTACGGCTTTCGCGATGCCTGGTCGATTGGCGTGGGGCCGCGCTACCTGATCGGCGTATGGATTGGCCGCCCCGACGGTACACCGGTGcc        >  8:74838/1‑149 (MQ=255)                                                                                                                                      cgACCCGCACGCCGAACTGGTGCAGCGCCCGCTACTGGCCTGGAAAACCGGCACCAGCTACGGCTTTCGCGATGCCTGGTCGATTGGCGTGGGGCCGCGCTACCTGATCGGCGTATGGATTGGCCGCCCCGACGGTACACCGGTGCCTg      <  6:219959/149‑1 (MQ=255)                                                                                                                                        aCCCGCACGCCGAACTGGTGCAGCGCCCGCTACTGGCCTGGAAAACCGGCACCAGCTACGGCTTTCGCGATGCCTGGTCGATTGGCGTGGGGCCGCGCTACCTGATCGGCGTATGGATTGGCCGCCCCGACGGTACACCGGTGCCTggg    <  7:209153/149‑1 (MQ=255)                                                                                                                                                gccgAACTGGTGCAGCGCCCGCTACTGGCCTGGAAAACCGGCACCAGCTACGGCTTTCGCGATGCCTGGTCGATTGGGGTGGGGCCGCGCTACCTGATCGGCGTATGGATTGGCCGcccc                         >  1:100222‑M2/5‑120 (MQ=255)                                                                                                                                                gccgAACTGGTGCAGCGCCCGCTACTGGCCTGGAAAACCGGCACCAGCTACGGCTTTCGCGATGCCTGGTCGATTGGCGTGGGGCCGCGCTACCTGATCGGCGTATGGATTGGCCGcccc                         <  2:100222‑M2/116‑1 (MQ=255)                                                                                                                                                   gAACTGGTGCAGCGCCCGCTACTGGCCTGGAAAACCGGCACCAGCTACGGCTTTCGCGATGCCTGGTCGATTGGCGTGGGGCCGCGCTACCTGATCGGCATATGGATTGGCCGCCCCGACGGTACACCGGTGCCTGGGCa  >  7:102766‑M2/2‑140 (MQ=255)                                                                                                                                                   gAACTGGTGCAGCGCCCGCTACTGGCCTGGAAAACCGGCACCAGCTACGGCTTTCGCGATGCCTGGTCGATTGGCGTGGGGCCGCGCTACCTGATCGGCATATGGATTGGCCGCCCCGACGGTACACCGGTGCCTGGGCa  <  8:102766‑M2/139‑1 (MQ=255)                                                                                                                                                    aaCTGGTGCAGCGCCCGCTACTGGCCTGGAAAACCGGCACCAGCTACGGCTTTCGCGATGCCTGGTCGATTGGCGTGGGGCCGCGCTACCTGATCGGCGTATGGATTGGCCGCCCCGAc                      <  5:80770/119‑1 (MQ=255)                                                                                                                                                    aaCTGGTGCAGCGCCCGCTACTGGCCTGGAAAACCGGCACCAGCTACGGCTTTCGCGATGCCTGGTCGATTGGCGTGGGGCCGCGCTACCTGATCGGCGTATGGATTGGCCGCCCCGAc                      >  6:80770/1‑119 (MQ=255)                                                                                                                                                    |                                                                                                                                           CGCTGGCGCGGGGTGGCAACAGTGCGCAGGTGCGCTTGCAGCCACAGGCCCCCCTGGTGGAGCACCGGTTGCTGTCACCGGGGGCGGCGTGGATCATCCGGCGTATTCTCAGCGGCCAGGCGCGCCCGGACCGCGACCCGCACGCCGAACTGGTGCAGCGCCCGCTACTGGCCTGGAAAACCGGCACCAGCTACGGCTTTCGCGATGCCTGGTCGATTGGCGTGGGGCCGCGCTACCTGATCGGCGTATGGATTGGCCGCCCCGACGGTACACCGGTGCCTGGGCA  >  NC_002947/669931‑670216

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.