New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	741470 =	NA (NA)	7 (0.150)	7/248	NT	10.9%	intergenic (+70/‑430)	PP_t12/PP_0635	tRNA‑Thr/group II intron‑encoding maturase
	?	NC_002947	2069163 =	59 (1.200)					intergenic (+10/‑464)	PP_t19/PP_1846	tRNA‑Ser/group II intron‑encoding maturase

CACGCCGGTGTAGCTCAGTCGGTAGAGCAGCGCACTCGTAACGCGAAGGTCGCAGGTTCGATTCCTGTCTCCGGCACCAGAATCAGT‑‑TGGTCTATGGCGA‑‑TTTCTCGCTACCTGGCACCAATAGAAGCCCGCCTTGTGCGGGCTTTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCGTAAGCGCAACCCGCTTGGTTGTGGTGGCCAAGTGGGTGACTTGGAGGTGAAAGTCCTCTACACACCCGGCAAGGGGAAGTGTTAGCCGGAGGCAAGGGTGTCGCGGGTGAC  >  NC_002947/741322‑741609                                                                                                                                                         |                                                                                                                                            cacGCCGGTGTAGCTCAGTCGGTAGAGCAGCGCACTCGTAACGCGAAGGTCGCAGGTTCGATTCCTGTCTCCGGCACCAGAATCAGT‑‑TGGTCTATGGCGA‑‑TTTCTCGCTACCTGGCACCAATAGAAGCCCGCCTTGTGCGGGCtttttt                                                                                                                                             <  8:85762/149‑1 (MQ=255) cacGCCGGTGTAGCTCAGTCGGTAGAGCAGCGCACTCGTAACGCGAAGGTCGCAGGTTCGATTCCTGTCTCCGGCACCAGAATCAGT‑‑TGGTCTATGGCGA‑‑TTTCTCGCTACCTGGCACCAATAGAAGCCCGCCTTGTGCGGGCtttttt                                                                                                                                             >  7:152082/1‑149 (MQ=255) cacGCCGGTGTAGCTCAGTCGGTAGAGCAGCGCACTCGTAACGCGAAGGTCGCAGGTTCGATTCCTGTCTCCGGCACCAGAATCAGT‑‑TGGTCTATGGCGA‑‑TTTCTCGCTACCTGGCACCAATAGAAGCCCGCCTTGTGCGGGCtttttt                                                                                                                                             <  3:238700/149‑1 (MQ=255)    gCCGGTGTAGCTCAGTCGGTAGAGCAGCGCACTCGTAACGCGAAGGTCGCAGGTTCGATTCCTGTCTCCGGCACCAGAATCAGT‑‑TGGTCTATGGCGA‑‑TTTCTCGCTACCTGGCACCAATAGAAGCCCGCCTTGTGCGGGCTTTTTtgtg                                                                                                                                          >  6:160501/1‑149 (MQ=255)    gCCGGTGTAGCTCAGTCGGTAGAGCAGCGCACTCGTAACGCGAAGGTCGCAGGTTCGATTCCTGTCTCCGGCACCAGAATCAGT‑‑TGGTCTATGGCGA‑‑TTTCTCGCTACCTGGCACCAATAGAAGCCCGCCTTGTGCGGGCTTTTTtgtg                                                                                                                                          <  5:160501/149‑1 (MQ=255)    gCCGGTGTAGCTCAGTCGGTAGAGCAGCGCACTCGTAACGCGAAGGTCGCAGGTTCGATTCCTGTCTCCGGCACCAGAATCAGT‑‑TGGTCTATGGCGA‑‑TTTCTCGCTACCTGGCACCAATAGAAGCCCGCCTTGTGCGGGCTTTTTtgtg                                                                                                                                          >  4:127364/1‑149 (MQ=255)    gCCGGTGTAGCTCAGTCGGTAGAGCAGCGCACTCGTAACGCGAAGGTCGCAGGTTCGATTCCTGTCTCCGGCACCAGAATCAGT‑‑TGGTCTATGGCGA‑‑TTTCTCGCTACCTGGCACCAATAGAAGCCCGCCTTGTGCGGGCTTTTTtgt                                                                                                                                           >  7:183735/1‑148 (MQ=255)    gCCGGTGTAGCTCAGTCGGTAGAGCAGCGCACTCGTAACGCGAAGGTCGCAGGTTCGATTCCTGTCTCCGGCACCAGAATCAGT‑‑TGGTCTATGGCGA‑‑TTTCTCGCTACCTGGCACCAATAGAAGCCCGCCTTGTGCGGGCTTTTTtgt                                                                                                                                           <  8:183735/148‑1 (MQ=255)          gtAGCTCAGTCGGTAGAGCAGCGCACTCGTAACGCGAAGGTCGCAGGTTCGATTCCTGTCTCCGGCACCAGAATCAGT‑‑TGGTCTATGGCGA‑‑TTTCTCGCTACCTGGCACCAATAGAAGCCCGCCTTGTGCGGGCTTTTTTGTGTgcgc                                                                                                                                     >  6:291382/1‑148 (MQ=255)             gCTCAGTCGGTAGAGCAGCGCACTCGTAACGCGAAGGTCGCAGGTTCGATTCCTGTCTCCGGCACCAGAATCAGT‑‑TGGTCTATGGCGA‑‑TTTCTCGCTACCTGGCACCAATAGAAGCCCGCCTTGTGCGGGCTTTTTTGTGTGCGCCAg                                                                                                                                  <  3:127364/148‑1 (MQ=255)              cTCAGTCGGTAGAGCAGCGCACTCGTAACGCGAAGGTCGCAGGTTCGATTCCTGTCTCCGGCACCAGAATCATTAGTGGTATATGGCGAAGTTTCTCGCTACATGGCACAAATAGAAGCCCGCCTTGTGCGGGCTTTTTTTTGTgcgc                                                                                                                                     >  1:256457/1‑148 (MQ=255)              cTCAGTCGGTAGAGCAGCGCACTCGTAACGCGAAGGTCGCAGGTTCGATTCCTGTCTCCGGCACCAGAATCAGT‑‑TGGTCTATGGCGA‑‑TTTCTCGCTACCTGGCACCAATAGAAGCCCGCCTTGTGCGGGCTTTTTTGTGTGCGCCAgg                                                                                                                                 >  5:270713/1‑148 (MQ=255)                cAGTCGGTAGAGCAGCGCACTCGTAACGCGAAGGTCGCAGGTTCGATTCCTGGCGCCGGCACCAGAATCAGT‑‑TGGTCTATGGCGA‑‑TTTCTCGCTACCTGGCACCAATAGAAGCCCGCCTTGTGCGGGCTTTTTTGTGTGCGCCAGGCAt                                                                                                                              >  2:65269/1‑149 (MQ=255)                 aGTCGGTAGAGCAGCGCACTCGTAACGCGAAGGTCGCAGGTTCGATTCCTGTCTCCGGCACCAGAATCAGT‑‑TGGTCTATGGCGA‑‑TTTCTCGCTACCTGGCACCAATAGAAGCCCGCCTTGTGCGGGCTTTTTTGTGTGCGCCAGGCATg                                                                                                                             <  8:152082/149‑1 (MQ=255)                     ggTAGAGCAGCGCACTCGTAACGCGAAGGTCGCAGGTTCGATTCCTGTCTCCGGCACCAGAATCAGT‑‑TGGTCTATGGCGA‑‑TTTCTCGCTACCTGGCACCAATAGAAGCCCGCCTTGTGCGGGCTTTTTTGTGTGCGCCAGGCATGgcgc                                                                                                                         >  2:81095/1‑149 (MQ=255)                       tAGAGCAGCGCACTCGTAACGCGAAGGTCGCAGGTTCGATTCCTGTCTCCGGCACCAGAATCAGT‑‑TGGTCTATGGCGA‑‑TTTCTCGCTACCTGGCACCAATAGAAGCCCGCCTTGTGCGGGCtttttt                                                                                                                                             >  3:296933/1‑127 (MQ=255)                       tAGAGCAGCGCACTCGTAACGCGAAGGTCGCAGGTTCGATTCCTGTCTCCGGCACCAGAATCAGT‑‑TGGTCTATGGCGA‑‑TTTCTCGCTACCTGGCACCAATAGAAGCCCGCCTTGTGCGGGCtttttt                                                                                                                                             <  4:296933/127‑1 (MQ=255)                         gagCAGCGCACTCGTAACGCGAAGGTCGCAGGTTCGATTCCTGTCTCCGGCACCAGAATCAGT‑‑TGGTCTATGGCGA‑‑TTTCTCGCTACCTGGCACCAATACAAGCCCGCCTTGTGCGGGCTTTTTTGTGTGCGCCAGGCATGGCGCGTTg                                                                                                                     >  5:100043/1‑149 (MQ=255)                          agcagcGCACTCGTAACGCGAAGGTCGCAGGTTCGATTCCTGTCTCCGGCACCAGAATCAGT‑‑TGGTCTATGGCGA‑‑TTTCTCGCTACCTGGCACCAATAGAAGCCCGCCTTGTGCGGGCTTTTTTGTGTGCGCCAGGCATGGCGCGTTgc                                                                                                                    >  2:179320/1‑149 (MQ=255)                            cagcGCACTCGTAACGCGAAGGTCGCAGGTTCGATTCCTGTCTCCGGCACCAGAATCAGT‑‑TGGTCTATGGCGA‑‑TTTCTCGCTACCTGGCACCAATAGAAGCCCGCCTTGTGCGGGCTTTTATGTGTGCGCCAGGCATGGCGCGTTgcgc                                                                                                                  <  1:179320/149‑1 (MQ=255)                                gcACTCGTAACGCGAAGGTCGCAGGTTCGATTCCTGTCTCCGGCACCAGAATCAGT‑‑TGGTCTATGGCGA‑‑TTTCTCGCTACCTGGCACCAATAGAAGCCCGCCTTGTGCGGGCTTTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCGTaa                                                                                                              <  5:278260/149‑1 (MQ=255)                                 cACTCGTAACGCGAAGGTCGCAGGTTCGATTCCTGTCTCCGGCACCAGAATCAGT‑‑TGGTCTATGGCGA‑‑TTTCTCGCTACCTGGCACCAATAGAAGCCCGCCTTGTGCGGGCTTTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCGTAAg                                                                                                             >  7:212518/1‑149 (MQ=255)                                    tCGTAACGCGAAGGTCGCAGGTTCGATTCCTGTCTCCGGCACCAGAATCAGT‑‑TGGTCTATGGCGA‑‑TTTCTCGCTACCTGGCACCAATAGAAGCCCGCCTTGTGCGGGCTTTTTTGTGTGCGCCAGGCATGGCGCGTTgcgc                                                                                                                  >  8:299504/1‑141 (MQ=255)                                    tCGTAACGCGAAGGTCGCAGGTTCGATTCCTGTCTCCGGCACCAGAATCAGT‑‑TGGTCTATGGCGA‑‑TTTCTCGCTACCTGGCACCAATAGAAGCCCGCCTTGTGCGGGCTTTTTTGTGTGCGCCAGGCATGGCGCGTTgcgc                                                                                                                  <  7:299504/141‑1 (MQ=255)                                    tCGTAACGCGAAGGTCGCAGGTTCGATTCCTGTCTCCGGCACCAGAATCAGT‑‑TGGTCTATGGCGA‑‑TTTCTCGCTACCTGGCACCAATAGAAGCCCGCCTTGTGCGGGCTTTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCGTAAgcg                                                                                                           >  6:327316/1‑148 (MQ=255)                                       tAACGCGAAGGTCGCAGGTTCGATTCCTGTCTCCGGCACCAGAATCAGT‑‑TGGTCTATGGCGA‑‑TTTCTCGCTACCTGGCACCAATAGAAGCCCGCCTTGTGCGGGCTTTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCGTAAGCGCAAc                                                                                                       >  4:173885/1‑149 (MQ=255)                                           gcgAAGGTCGCAGGTTCGATTCCTGTCTCCGGCACCAGAATCAGT‑‑TGGTCTATGGCGA‑‑TTTCTCGCTACCTGGCACCAATAGAAGCCCGCCTTGTGCGGGCTTTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCGTAAGCGCAACCCGc                                                                                                   >  5:303012/1‑149 (MQ=255)                                             gAAGGTCGCAGGTTCGATTCCTGTCTCCGGCACCAGAATCAGT‑‑TGGTCTATGGCGA‑‑TTTCTCGCTACCTGGCACCAATAGAAGCCCGCCTTGTGCGGGCTTTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCGTAAgc                                                                                                            >  5:6844/1‑138 (MQ=255)                                             gAAGGTCGCAGGTTCGATTCCTGTCTCCGGCACCAGAATCAGT‑‑TGGTCTATGGCGA‑‑TTTCTCGCTACCTGGCACCAATAGAAGCCCGCCTTGTGCGGGCTTTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCGTAAgc                                                                                                            <  6:6844/138‑1 (MQ=255)                                                 gTCGCAGGTTCGATTCCTGTCTCCGGCACCAGAATCAGT‑‑TGGTCTATGGCGA‑‑TTTCTCGCTACCTGGCACCAATAGAAGCCCGCCTTGTGCGGGCTTTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCGTAAGCGCAACCCGCTTGGtt                                                                                             >  2:27532/1‑149 (MQ=255)                                                  tCGCAGGTTCGATTCCTGTCTCCGGCACCAGAATCAGT‑‑TGGTCTATGGCGA‑‑TTTCTCGCTACCTGGCACCAATAGAAGCCCGCCTTGTGCGGGCTTTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCGTAAGCGCAACCCGCTTGGTtg                                                                                            >  1:230785/1‑149 (MQ=255)                                                    gCAGGTTCGATTCCTGTCTCCGGCACCAGAATCAGT‑‑TGGTCTATGGCGA‑‑TTTCTCGCTACCTGGCACCAATAGAAGCCCGCCTTGTGCGGGCTTTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCGTAAGCGCAACCCGCTTGGTtgt                                                                                           <  8:64342/148‑1 (MQ=255)                                                      aGGTTCGATTCCTGTCTCCGGCACCAGAATCAGT‑‑TGGTCTATGGCGA‑‑TTTCTCGCTACCTGGCACCAATAGAAGCCCGCCTTGTGCGGGCTTTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCGTAAGCGCTACCCGCTTGGTTgtggt                                                                                        <  3:68454/149‑1 (MQ=255)                                                      aGGTTCGATTCCTGTCTCCGGCACCAGAATCAGT‑‑TGGTCTATGGCGA‑‑TTTCTCGCTACCTGGCACCAATAGAAGCCCGCCTTGTGCGGGCTTTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCGTAAGCGCAACCCGCTTGGTTgtggt                                                                                        <  2:256457/149‑1 (MQ=255)                                                      aGGTTCGATTCCTGTCTCCGGCACCAGAATCAGT‑‑TGGTCTATGGCGA‑‑TTTCTCGCTACCTGGCACCAATAGAAGCCCGCCTTGTGCGGGCTTTTTTGTGTGCGCCAGACATGGCGCGTTGCGCGTAAGCGCAACCCGCTTGGTTgtggt                                                                                        >  4:157398/1‑149 (MQ=255)                                                      aGGTTAGATTCCTGTCTCCGTCACCAGAATCAGT‑‑TGGTCTATGGCGA‑‑TTTCTCTCTACCTGGCACCAATAGAAGCCCGCCTTGTGCGGGCTTTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCGTAAGCGCAACCCGCTTGGTTgtggt                                                                                        <  7:280349/149‑1 (MQ=255)                                                         ttCGATTCCTGTCTCCGGCACCAGAATCAGT‑‑TGGTCTATGGCGA‑‑TTTCTCGCTACCTGGCACCAATAGAAGCCCGCCTTGTGCGGGCTTTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCTTACGCGCAAcgcg                                                                                                    <  4:56462/134‑1 (MQ=255)                                                         ttCGATTCCTGTCTCCGGCACCAGAATCAGT‑‑TGGTCTATGGCGA‑‑TTTCTCGCTACCTGGCACCAATAGAAGCCCGCCTTGTGCGGGCTTTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCTTACGCGCAAcgcg                                                                                                    >  3:56462/1‑134 (MQ=255)                                                         ttCGATTCCTGTCTCCGGCACCAGAATCAGT‑‑TGGTCTATGGCGA‑‑TTTCTCGCTACCTGGCACCAATAGAAGCCCGCCTTGTGCGGGCTTTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCGTAAGCGCAACCCGCTTGGTTGTGGTGGc                                                                                     <  6:303012/149‑1 (MQ=255)                                                         ttCGATTCCTGTCTCCGGCACCAGAATCAGT‑‑TGGTCTATGGCGA‑‑TTTCTCGCTACCTGGCACCAATAGAAGCCCGCCTTGTGCGGGCTTTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCGTAAGCGCAACCCGCTTGGTTGTGGTGGc                                                                                     >  3:17193/1‑149 (MQ=255)                                                               tCCTGTCTCCGGCACCAGAATCAGT‑‑TGGTCTATGGCGA‑‑TTTCTCGCTACCTGGCACCAATAGAAGCCCGCCTTGTGCGGGCTTTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCGTAAGCGCAACCCGCTTGGTTGTGGTGGCCAAGTg                                                                               >  7:265513/1‑149 (MQ=255)                                                                  tGTCTCCGGCACCAGAATCAGT‑‑TGGTCTATGGCGA‑‑TTTCTCGCTACCTGGCACCAATAGAAGCCCGCCTTGTGCGGGCTTTTTTTTGTGCGCCAGGCATGGCGCGTTGCGCGTAAGCGCAACCCGCTTGGTTGTGGTGGCCAAGTGGGt                                                                            >  7:114482/1‑149 (MQ=255)                                                                  tGTCTCCGGCACCAGAATCAGT‑‑TGGTCTATGGCGA‑‑TTTCTCGCTACCTGGCACCAATAGAAGCCCGCCTTGTGCGGGCTTTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCGTAAGCGCAACCCGCTTGGTTGTGGTGGCCAAGTGGGt                                                                            >  4:77021/1‑149 (MQ=255)                                                                    tctcCGGCACCAGAATCAGT‑‑TGGTCTATGGCGA‑‑TTTCTCGCTACCTGGCACCAATAGAAGCCCGCCTTGTGCGGGCTTTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCGTAAGCGCAACCCGCTTGGTTGTGGTGGCCAAGTGGGt                                                                            <  1:81095/147‑1 (MQ=255)                                                                        cGGCACCAGAATCAGT‑‑TGGTCTATGGCGA‑‑TTTCTCGCTACCTGGCACCAATAGAAGCCCGCCTTGTGCGGGCTTTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCGTAAGCGCAACCCGCTTGGTTGTGGTGGCCAAGt                                                                                >  4:173614/1‑139 (MQ=255)                                                                        cGGCACCAGAATCAGT‑‑TGGTCTATGGCGA‑‑TTTCTCGCTACCTGGCACCAATAGAAGCCCGCCTTGTGCGGGCTTTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCGTAAGCGCAACCCGCTTGGTTGTGGTGGCCAAGt                                                                                <  3:173614/139‑1 (MQ=255)                                                                             ccAGAATCAGT‑‑TGGTCTATGGCGA‑‑TTTCTCGCTACCTGGCACCAATAGAAGCCCGCCTTGTGCGGGCTTTTTTGTGTGCGGCAGGCATGGCGCGTTGCGCGTAAGCGCAACCCGCTTGGTTGTGGTGGCCAAGTGGGTGACTTGGAGGt                                                                 <  4:239906/149‑1 (MQ=255)                                                                               aGAATCAGT‑‑TGGTCTATGGCGA‑‑TTTCTCGCTACCTGGCACCAATAGAAGCCCGCCTTGTGCGGGCTTTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCGTAAGCGCAACCCGCTTGGTTGTGGTGGCCAAGt                                                                                <  6:95311/132‑1 (MQ=255)                                                                               aGAATCAGT‑‑TGGTCTATGGCGA‑‑TTTCTCGCTACCTGGCACCAATAGAAGCCCGCCTTGTGCGGGCTTTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCGTAAGCGCAACCCGCTTGGTTGTGGTGGCCAAGt                                                                                >  5:95311/1‑132 (MQ=255)                                                                               aGAATCAGT‑‑TGGTCTATGGCGA‑‑TTTCTCGCTACCTGGCACCAATAGAAGCCCGCCTTGTGCGGGCTTTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCGTAAGCGCAACCCGCTTGGTTGTGGTGGCCAAGTGGGTGACTTGGAGGTg                                                                >  8:153773/1‑148 (MQ=255)                                                                                  aTCAGT‑‑TGGTCTATGGCGA‑‑TTTCTCGCTACCTGGCACCATTAGAAGCCCGCCTTGTGCGGGCTTTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCGTAAGCGCAACCCGCTTGGTTGTGGTGGCCAAGTGGGTGACTTGGAGGTGAAAg                                                            <  6:100043/149‑1 (MQ=255)                                                                                       t‑‑tGGTCTATGGCGA‑‑TTTCTCGCTACCTGGCACCAATAGAAGCCCGCCTTGTGCGGGCTTTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCGTAAGCGCAACCCGCTTGGTTGTGGTGGCCAAGTGGGTg                                                                           >  6:93940/1‑129 (MQ=255)                                                                                       t‑‑tGGTCTATGGCGA‑‑TTTCTCGCTACCTGGCACCAATAGAAGCCCGCCTTGTGCGGGCTTTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCGTAAGCGCAACCCGCTTGGTTGTGGTGGCCAAGTGGGTg                                                                           <  5:93940/129‑1 (MQ=255)                                                                                       t‑‑tGGTCTATGGCGA‑‑TTTCTCGCTACCTGGCACCAATAGAAGCCCGCCTTGTGCGGGCTTTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCGTAAGCGCAACCCGCTTGGTTGTGGTGGCCAAGTGGGTGACTTGGAg                                                                   <  1:207410/137‑1 (MQ=255)                                                                                       t‑‑tGGTCTATGGCGA‑‑TTTCTCGCTACCTGGCACCAATAGAAGCCCGCCTTGTGCGGGCTTTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCGTAAGCGCAACCCGCTTGGTTGTGGTGGCCAAGTGGGTGACTTGGAg                                                                   >  2:207410/1‑137 (MQ=255)                                                                                       t‑‑tGGTCTATGGCGA‑‑TTTCTCGCTACCTGGCACCAATAGAAGCCCGCCTTGTGCGGGCTTTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCGTAAGCGCAACCCGCTTGGTTGTGGTGGCCAAGTGGGTGACTTGGAGGTGAAAGTc                                                          >  8:130697/1‑146 (MQ=255)                                                                                       t‑‑tGGTCTATGGCGA‑‑TTTCTCGCTACCTGGCACCAATAGAAGCCCGCCTTGTGCGGGCTTTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCGTAAGCGCAACCCGCTTGGTTGTGGTGGCCAAGTGGGTGACTTGGAGGTGAAAGTc                                                          <  7:130697/146‑1 (MQ=255)                                                                                       t‑‑tGGTCTATGGCGA‑‑TTTCTCGCTACCTGGCACCAATAGAAGCCCGCCTTGTGCGGGCTTTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCGTAAGCGCAACCCGCTTGGTTGTGGTGGCCAAGTGGGTGACTTGGAGGTGAAAGTCctc                                                       <  5:291382/149‑1 (MQ=255)                                                                                       t‑‑tGGTCTATGGCGA‑‑TTTCTCGCTACCTGGCACCAATAGAAGCCCGCCTTGTGCGGGCTTTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCGTAAGCGCAACCCGCTTGGTTGTGGTGGCCAAGTGGGTGACTTGGAGGTGAAAGTCctc                                                       >  7:74489/1‑149 (MQ=255)                                                                                       t‑‑tGGTCTATGGCGA‑‑TTTCTCGCTACCTGGCACCAATAGAAGCCCGCCTTGTGCGGGCTTTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCGTAAGCGCAACCCGCTTGGTTGTGGTGGCCAAGTGGGTGACTTGGAGGTGAAAGTCctc                                                       <  3:10977/149‑1 (MQ=255)                                                                                       t‑‑tGGTCTATGGCGA‑‑TTTCTCGCTACCTGGCACCAATAGAAGCCCGCCTTGTGCGGGCTTTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCGTAAGCGCAACCCGCTTGGTTGTGGTGGCCAAGTGGGTGACTTGGAGGTGAAAGTCctc                                                       >  4:149258/1‑149 (MQ=255)                                                                                            gTCTATGGCGA‑‑TTTCTCGCTACCTGGCACCAATAGAAGCCCGCCTTGTGCGGGCTTTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCGTAAGCGCAACCCGCTTGGTTGTGGTGGCCAAGTGGGTGACTTGGAGGTGAAAGTCCTCTa                                                     <  3:149258/148‑1 (MQ=255)                                                                                            gTCTATGGCGA‑‑TTTCTCGCTACCTGGCACCAATAGAAGCCCGCCTTGTGCGGGCTTTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCGTAAGCGCAACCCGCTTGGTTGTGGTGGCCAAGTGGGTGACTTGGAGGTGAAAGTCCTCTa                                                     <  4:17193/148‑1 (MQ=255)                                                                                                 tGGCGA‑‑TTTCTCGCTACCTGGCACCAATAGAAGCCCGCCTTGTGCGGGCTTTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCGTAAGCGCAACCCGCTTGGTTGTGGTGGCCAAGTGGGTGACTTGGAGGTGAAAGTCCTCTacac                                                  <  5:327316/146‑1 (MQ=255)                                                                                                   gCGA‑‑TTTCTCGCTACCTGGCACCAATAGAAGCCCGCCTTGTGCGGGCTTTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCGTAAGCGCAACCCGCTTGGTTGTGGTGGCCAAGTGGGTGACTTGGAGGTGAAAGTCCTCTaca                                                   <  5:219691/143‑1 (MQ=255)                                                                                                   gCGA‑‑TTTCTCGCTACCTGGCACCAATAGAAGCCCGCCTTGTGCGGGCTTTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCGTAAGCGCAACCCGCTTGGTTGTGGTGGCCAAGTGGGTGACTTGGAGGTGAAAGTCCTCTaca                                                   >  6:219691/1‑143 (MQ=255)                                                                                                     gA‑‑TTTCTCGCTACCTGGCACCAATAGAAGCCCGCCTTGTGCGGGCTTTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCGTAAGCGCAACCCGCTTGGTTGTGGTGGCCAAGTGGGTGACTTGGAGGTGAAAGTCCTCTACACACCCgg                                            >  5:288045/1‑148 (MQ=255)                                                                                                            ctcGCTACCTGGCACCAATAGAAGCCCGCCTTGTGCGGGCTTTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCGTAAGCGCAACCCGCTTGGTTGTGGTGGCCAAGTGGGTGACTTGGAGGTGAAAGTCCTCTa                                                     >  1:34683/1‑134 (MQ=255)                                                                                                            ctcGCTACCTGGCACCAATAGAAGCCCGCCTTGTGCGGGCTTTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCGTAAGCGCAACCCGCTTGGTTGTGGTGGCCAAGTGGGTGACTTGGAGGTGAAAGTCCTCTa                                                     <  2:34683/134‑1 (MQ=255)                                                                                                            ctcGCTACCTGGCACCAATAGAAGCCCGCCTTGTGCGGGCTTTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCGTAAGCGCAACCCGCTTGGTTGTGGTGGCCAAGTGGGTGACTTGGAGGTGAAAGTCCTCTACACACCCGGCAAgg                                       <  1:65269/148‑1 (MQ=255)                                                                                                             tcGCTACCTGGCACCAATAGAAGCCCGCCTTGTGCGGGCTTTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCGTAAGCGCAACCCGCTTGGTTGTGGTGGCCAAGTGGGTGACTTGGAGGTGAAAGTCctc                                                       >  4:114498/1‑131 (MQ=255)                                                                                                             tcGCTACCTGGCACCAATAGAAGCCCGCCTTGTGCGGGCTTTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCGTAAGCGCAACCCGCTTGGTTGTGGTGGCCAAGTGGGTGACTTGGAGGTGAAAGTCctc                                                       <  3:114498/131‑1 (MQ=255)                                                                                                               gCTACCTGGCACCAATAGAAGCCCGCCTTGTGCGGGCTTTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCGTAAGCGCAACCCGCTTGGTTGTGGTGGCCAAGTGGGTGACTTGGAGGTGAAAGTCCTCTACACACCCGGCAAggg                                      <  8:114482/146‑1 (MQ=255)                                                                                                               gCTACCTGGCACCAATAGAAGCCCGCCTTGTGCGGGCTTTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCGTAAGCGCAACCCACTTGGTTGTGGTGGCCAAGTGGGTGACTTGGAGGTGAAAGTCCTCTACACACCCGGCAAGGGGaa                                   <  5:5884/149‑1 (MQ=255)                                                                                                                 tACCTGGCACCAATAGAAGCCCGCCTTGTGCGGGCTTTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCGTAAGCGCAACCCGCTTGGTTGTGGTGGCCAAGTGGGTGACTTGGAGGTGa                                                               <  5:24117/119‑1 (MQ=255)                                                                                                                 tACCTGGCACCAATAGAAGCCCGCCTTGTGCGGGCTTTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCGTAAGCGCAACCCGCTTGGTTGTGGTGGCCAAGTGGGTGACTTGGAGGTGa                                                               >  6:24117/1‑119 (MQ=255)                                                                                                                   ccTGGCACCAATAGAAGCCCGCCTTGTGCGGGCTTTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCGTAAGCGCAACCCGCTTGGTTGTGGTGGCCAAGTGGGTGACTTGGAGGTGAAAGTCCTCTACACACCCGGCAAGGGGAAgtg                                <  8:212518/148‑1 (MQ=255)                                                                                                                       gCACCAATAGAAGCCCGCCTTGTGCGGGCTTTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCGTAAGCGCAACCCGCTTGGTTGTGGTGGCCAAGTGGGTGACTTGGAGGTGAAAGTCCTCTACACACCCGGCAAGGGGAAGTGTTa                             <  2:230785/147‑1 (MQ=255)                                                                                                                       gCACCAATAGAAGCCCGCCTTGTGCGGGCTTTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCGTAAGCGCAACCCGCTTGGTTGTGGTGGCCAAGTGGGTGACTTGGAGGTGAAAGTCCTCTACACACCCGGCAAGGGGAAGTGTTa                             <  3:173885/147‑1 (MQ=255)                                                                                                                          ccAATAGAAGCCCGCCTTGTGCGGGCTTTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCGTAAGCGCAACCCGCTTGGTTGTGGTGGCCAAGTGGGTGACTTGGAGGTGAAAGTCCTCTACACACCCGGCAAGGGGAAGTGTTAGCCgg                        >  5:169325/1‑149 (MQ=255)                                                                                                                           cAATAGAAGCCCGCCTTGTGCGGGCTTTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCGTAAGCGCAACCCGCTTGGTTGTGGTGGCCAAGTGGGTGACTTGGAGGTGAAAGTCCTCTACACACCCGGCAAGGGGAAGTGTTAGCCg                         >  7:71328/1‑147 (MQ=255)                                                                                                                             aTAGAAGCCCGCCTTGTGCGGGCTTTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCGTAAGCGCAACCCGCTTGGTTGTGGTGGCCAAGTGGGTGACTTGGAGGTGAAAGTCCTCTACACACCCGGCAAGGGGAAGTGTTAGCCGGAgg                     >  3:230949/1‑149 (MQ=255)                                                                                                                              tAGAAGCCCGCCTTGTGCGGGCTTTTTTGTGTGCGCCAGGCATCGCGCGTTGCGCGTAAGCGCAACCCGCTTGGTTGTGGTGGCCAAGTGGGTGACTTGGAGGTGAAAGTCCTCTACACACCCGGCAAGGGGAAGTGTTAGCCGGAGGc                    <  6:288045/149‑1 (MQ=255)                                                                                                                               aGAAGCCCGCCTTGTGCGGGCTTTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCGTAAGCGCAACCCGCTTGGTTGTGGTGGCCAAGTGGGTGACTTGGAGGTGAAAGTCCTCTACACACCCGGCAAgggg                                     >  8:10586/1‑131 (MQ=40)                                                                                                                               aGAAGCCCGCCTTGTGCGGGCTTTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCGTAAGCGCAACCCGCTTGGTTGTGGTGGCCAAGTGGGTGACTTGGAGGTGAAAGTCCTCTACACACCCGGCAAgggg                                     <  7:10586/131‑1 (MQ=40)                                                                                                                                  aGCCCGCCTTGTGCGGGCTTTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCGTAAGCGCAACCCGCTTGGTTGTGGTGGCCAAGTGGGTGACTTGGAGGTGAAAGTCCTCTACACACCCGGCAAGGGGAAGTGTTAGCCGGAGGCAAgg                <  7:153773/149‑1 (MQ=38)                                                                                                                                   gCCCGCCTTGTGCGGGCTTTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCGTAAGCGCAACCCGCTTGGTTGTGGTGGCCAAGTGGGTGACTTGGAGGTGAAAGTCCTCTACACACCCGGCAAGGGGAAGTGTTAGCCGGAGGCAAggg               >  6:284822/1‑149 (MQ=37)                                                                                                                                   gCCCGCCTTGTGCGGGCTTTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCGTAAGCGCAACCCGCTTGGTTGTGGTGGCCAAGTGGGTGACTTGGAGGTGAAAGTCCTCTACACACCCGGCAAGGGGAAGTGTTAGCCGGAGGCAAggg               >  3:116779/1‑149 (MQ=37)                                                                                                                                      cGCCTTGTGCGGGCTTTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCGTAAGCGCAACCCGCTTGGTTGTGGTGGCCAAGTGGGTGACTTGGAGGTGAAAGTCCTCTACACACCCGGCAAggg                                      <  7:100627/123‑1 (MQ=38)                                                                                                                                      cGCCTTGTGCGGGCTTTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCGTAAGCGCAACCCGCTTGGTTGTCGTGGCCAAGTGGGTGACTTGGAGGTGAAAGTCCTCTACACACCCGGCAAggg                                      >  8:100627/1‑123 (MQ=38)                                                                                                                                            gtgCGGGCTTTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCGTAAGCGCAACCCGCTTGGTTGTGGTGGCCAAGTGGGTGACTTGGAGGTGAAAGTCCTCTACACACCCGGCAAGGGGAAGTGTTAGCCGGAGGCAAGGGTGTCGCgg       <  5:284822/148‑1 (MQ=32)                                                                                                                                             tgCGGGCTTTTTTGTGTGCGCCAGTCATGGCGCGTTGCGCGTAAGCGCAACCCGCTTGGTTGTGGTGGCCAAGTGGGTGACTTGGAGGTGAAAGTCCTCTACACACCCGGCAAGGGGAAGTGTTAGCCGGAGGCAAGGGTGTCGCGGGt     <  3:157398/149‑1 (MQ=17)                                                                                                                                              gCGGGCTTTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCGTAAGCGCAACCCGCTTGGTTGTGGTGGCAAAGTGGGTGACTTGGAGGTGAAAGTCCTCTACACACCCGGCAAGGGGAAGTGTTAGCCGGAGGCAAGGGTGTCGCGGGt     >  2:144209/1‑148 (MQ=17)                                                                                                                                                gggCTTTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCGTAAGCGCAACCCGCTTGGTTGTGGTGGCCAAGTGGGTGACTTGGAGGTGAAAGTCCTCTACACACCCGGCAAGGGGAAGTGTTAGCCGGAGGCAAGGGTGTCGCGGGTGAc  >  3:35296/1‑149 (MQ=32)                                                                                                                                                gggCTTTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCGTAAGCGCAACCCGCTTGGTTGTGGTGGCCAAGTGGGTGACTTGGAGGTGAAAGTCCTCTACACACCCGGCAAGGGGAAGTGTTAGCCGGAGGCAAGGGTGTCGCGGGTGAc  >  3:230525/1‑149 (MQ=32)                                                                                                                                                         |                                                                                                                                            CACGCCGGTGTAGCTCAGTCGGTAGAGCAGCGCACTCGTAACGCGAAGGTCGCAGGTTCGATTCCTGTCTCCGGCACCAGAATCAGT‑‑TGGTCTATGGCGA‑‑TTTCTCGCTACCTGGCACCAATAGAAGCCCGCCTTGTGCGGGCTTTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCGTAAGCGCAACCCGCTTGGTTGTGGTGGCCAAGTGGGTGACTTGGAGGTGAAAGTCCTCTACACACCCGGCAAGGGGAAGTGTTAGCCGGAGGCAAGGGTGTCGCGGGTGAC  >  NC_002947/741322‑741609

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.