New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	936444 =	45 (0.910)	3 (0.060)	3/246	NT	6.5%	coding (9178/18933 nt)	PP_0806	surface adhesion protein
	?	NC_002947	936481 =	43 (0.910)					coding (9141/18933 nt)	PP_0806	surface adhesion protein

CTTCCACCTGGGTATCTGCCGGTGCGGTACCGGAAACGCTGGAGCCGTCACCGGCCACCACCACGCCGCTCGGGCTTTCGGGCAGCGGTGTATCGGCAACGGTCACGCTGACCCCTGCCGAGGTATTGCCGGCGGCATCGGTCTGCACCAGCACGAGGTTCTCACCTGCGGCCAGCGGTGCCTCCAGGTCAATCACGAAGGTGCCATTTGGCGCCACGGTGCCAGTACCGATGACTGCGCCCTGGGCATCACGCACTTCCACTGTGGCACCGGGCTCGCCACGGCCAGACAC  >  NC_002947/936300‑936591                                                                                                                                                 |                                                                                                                                                    gccgacgtggtggcaagcgatggcagcctggccgtgtctggccgtggcgagcccggtgccacagtggaagtgcgtgatgcccagggcgcagtcatcggtactggcaccgtggcgccaaatggcaccttcgtgattgacctggagGCAcc                                                                                                                                                 <  7:125932‑M1/5‑1 (MQ=255)  ttCCACCTGGGTATCTGCCGGTGCGGTACCGGAAACGCTGGAGCCGTCACCGGCCACCACCACGCCGCTCGGGCTTTCGGGCAGCGGTGTATCGGCAACGGTCACGCTGACCCCTGCCGAGGTATTGCCGGCGGCATCGGTCTGCAc                                                                                                                                                  >  1:290095/1‑147 (MQ=255)    ccACCTGGGTATCTGCCGGTGCGGTACCGGAAACGCTGGAGCCGTCACCGGCCACCACCACGCCGCTCGGGCTTTCGGGCAGCGGTGTATCGGCAACGGTCACGCTGACCCCTGCCGAGGTATTGCCGGCGGCATCGGTCTGCACCa                                                                                                                                                <  5:290249/147‑1 (MQ=255)      aCCTGGGTATCTGCCGGTGCGGTACCGGAAACGCTGGAGCCGTCACCGGCCACCACCACGCCGCTCGGGCTTTCGGGCAGCGGTGTATCGGCAACGGTCACGCTGACCCCTGCCGAGGTATTGCCGGCGGCATCGGTCTGCACCAGCAc                                                                                                                                            >  4:247082/1‑149 (MQ=255)        cTGGGTATCTGCCGGTGCGGTACCGGAAACGCTGGAGCCGTCACCGGCCACCACCACGCCGCTCGGGCTTTCGGGCAGCGGTGTATCGGCAACGGTCACGCTGACCCCTGCCGAGGTATTGCCGGCGGCATCGGTCTGCACCAGCACGa                                                                                                                                          <  7:241249/149‑1 (MQ=255)           ggTATCTGCCGGTGCGGTACCGGAAACGCTGGAGCCGTCACCGGCCACCACCACGCCGCTCGGGCTTTCGGGCAGCGGTGTATCGGCAACGGTCACGCTGACCCCTGCCGAGGTATTGCCGGCGGCATCGGTCTGCACCAGCACGAGGt                                                                                                                                       >  1:30005/1‑149 (MQ=255)                cTGCCGGTGCGGTACCGGAAACGCTGGAGCCGTCACCGGCCACCACCACGCCGCTCGGGCTTTCGGGCAGCGGTGTATCGGCAACGGTCACGCTGACCCCTGCCGAGGTATTGCCGGCGGCATCGGTCTGCACCAGCACGAGGTtctc                                                                                                                                   <  7:245278/148‑1 (MQ=255)                   ccGGTGCGGTACCGGAAACGCTGGAGCCGTCACCGGCCACCACCACGCCGCTCGGGCTTTCGGGCAGCGGTGTATCGGCAACGGTCACGCTGACCCCTGCCGAGGTATTGCCGGCGGCATCGGTCTGCACCAGCACGAGGTTCTCa                                                                                                                                  <  2:170114/146‑1 (MQ=255)                     ggTGCGGTACCGGAAACGCTGGAGCCGTCACCGGCCACCACCACGCCGCTCGGGCTTTCGGGCAGCGGTGTATCGGCAACGGTCACGCTGACCCCTGCCGAGGTATTGCCGGCGGCATCGGTCTGCACCAGCACGAGGTTCTCACCTGc                                                                                                                             >  8:31564/1‑149 (MQ=255)                              ccGGAAACGCTGGAGCCGTCACCGGCCACCACCACGCCGCTCGGGCTTTCGGGCAGCGGTGTATCGGCAACGGTCACGCTGACCCCTGCCGAGGTATTGCCGGCGGCATCGGTCTGCACCAGCACGAGGTTCTCACCTGCGGCCAGCg                                                                                                                     <  7:31564/148‑1 (MQ=255)                                ggAAACGCTGGAGCCGTCACCGGCCACCACCACGCCGCTCGGGCTTTCGGGCAGCGGTGTATCGGCAACGGTCACGCTGACCCCTGCCGAGGTATTGCCGGCGGCATCGGTCTGCACCAGCACGAGGTTCTCACCTGCGGCCAGCGGTg                                                                                                                  >  4:85533/1‑149 (MQ=255)                                ggAAACGCTGGAGCCGTCACCGGCCACCACCACGCCGCTCGGGCTTTCGGGCAGCGGTGTATCGGCAACGGTCACGCTGACCCCTGCCGAGGTATTGCCGGCGGCATCGGTCTGCACCAGCACGAGGTTCTCACCTGCGGCCAGCGGTg                                                                                                                  >  6:150084/1‑149 (MQ=255)                                 gAAACGCTGGAGCCGTCACCGGCCACCACCACGCCGCTCGGGCTTTCGGGCAGCGGTGTATCGGCAACGGTCACGCTGACCCCTGCCGAGGTATTGCCGGCGGCATCGGTCTGCACCAGCACGAGGTTCTCACCTGCGGCCAGCGGTGc                                                                                                                 <  6:284356/149‑1 (MQ=255)                                 gAAACGCTGGAGCCGTCACCGGCCACCACCACGCCGCTCGGGCTTTCGGGCAGCGGTGTATCGGCAACGGTCACGCTGACCCCTGCCGAGGTATTGCCGGCGGCATCGGTCTGCACCAGCACGAGGTTCTCACCTGCGGCCAGCGGTGc                                                                                                                 >  5:70062/1‑149 (MQ=255)                                   aaCGCTGGAGCCGTCACCGGCCACCACCACGCCGCTCGGGCTTTCGGGCAGCGGTGTATCGGCAACGGTCACGCTGACCCCTGCCGAGGTATTGCCGGCGGCATCGGTCTGCACCAGCACGAGGTTCTCACCTGCGGCCAGCGGTGCCt                                                                                                               <  5:257758/149‑1 (MQ=255)                                         gccgtggcgagcccggtgccacagtggaagtgcgtgatgcccagggcgcagtcatcggtactggcaccgtggcgccaaatggcaccttcgtgattgacctggagGCACCAGCACGAGGTTCTCACCTGCGGCCAGCGGTGCCTCCa                                                                                                            >  2:197542‑M1/105‑146 (MQ=255)                                             ccGTCACCGGCCACCACCACGCCGCTCGGGCTTTCGGGCAGCGGTGTATCGGCAACGGTCACGCTGACCCCTGCCGAGGTATTGCCGGCGGCATCGGTCTGCACCAGCACGAGGTTCTCACCTGCGGCCAGCGGTGCCTCCAGGTCAAt                                                                                                     <  3:85533/149‑1 (MQ=255)                                               gTCACCGGCCACCACCACGCCGCTCGGGCTTTCGGGCAGCGGTGTATCGGCAACGGTCACGCTGACCCCTGCCGAGGTATTGCCGGCGGCATCGGTCTGCACCAGCACGAGGTTCTCACCTGCGGCCAGCGGTGCCTCCAGGTCAATCa                                                                                                   <  6:70062/149‑1 (MQ=255)                                                tCACCGGCCACCACCACGCCGCTCGGGCTTTCGGGCAGCGGTGTATCGGCAACGGTCACGCTGACCCCTGCCGAGGTATTGCCGGCGGCATCGGTCTGCACCAGCACGAGGTTCTCACCTGCGGCCAGCGGTGCCTCCAGGTCAATCAc                                                                                                  >  5:290409/1‑149 (MQ=255)                                                  aCCGGCCACCACCACGCCGCTCGGGCTTTCGGGCAGCGGTGTATCGGCAACGGTCACGCTGACCCCTGCCGAGGTATTGCCGGCGGCATCGGTCTGCACCAGCACGAGGTTCTCACCTGCGGCCAGCGGTGCCTCCAGGTCAATCACg                                                                                                 >  3:51798/1‑148 (MQ=255)                                                           caccacGCCGCTCGGGCTTTCGGGCAGCGGTGTATCGGCAACGGTCACGCTGACCCCTGCCGAGGTATTGCCGGCGGCATCGGTCTGCACCAGCACGAGGTTCTCACCTGCGGACAGCGGTGCCTCCAGGTCAATCACGAAGGTGCCAt                                                                                       >  5:93839/1‑149 (MQ=255)                                                                cgccgcTCGGGCTTTCGGGCAGCGGTGTATCGGCAACGGTCACGCTGACCCCTGCCGAGGTATTGCCGGCGGCATCGGTCTGCACCAGCACGAGGTTCTCACCTGCGGCCAGCGGTGCCTCCAGGTCAATCACGAAGGTGCCATTTGgc                                                                                  <  3:247082/149‑1 (MQ=255)                                                                      tCGGGCTTTCGGGCAGCGGTGTATCGGCAACGGTCACGCTGACCCCTGCCGAGGTATTGCCGGCGGCATCGGTCTGCACCAGCACGAGGTTCTCACCTGCGGCCAGCGGTGCCTCCAGGTCAATCACGAAGGTGCCATTTGGCGCCACg                                                                            >  8:69565/1‑149 (MQ=255)                                                                        gggCTTTCGGGCAGCGGTGTATCGGCAACGGTCACGCTGACCCCTGCCGAGGTATTGCCGGCGGCATCGGTCTGCACCAGCACGAGGTTCTCACCTGCGGCCAGCGGTGCCTCCAGGTCAATCACGAAGGTGCCATTTGGCGCCACg                                                                            <  6:93839/147‑1 (MQ=255)                                                                        gggCTTTCGGGCAGCGGTGTATCGGCAACGGTCACGCTGACCCCTGCCGAGGTATTGCCGGCGGCATCGGTCTGCACCAGCACGAGGTTCTCACCTGCGGCCAGCGGTGCCTCCAGGTCAATCACGAAGGTGCCATTTGGCGCCACGGt                                                                          <  2:30005/149‑1 (MQ=255)                                                                         ggCTTTCGGGCAGCGGTGTATCGGCAACGGTCACGCTGACCCCTGCCGAGGTATTGCCGGCGGCATCGGTCTGCACCAGCACGAGGTTCTCACCTGCGGCCAGCGGTGCCTCCAGGTCAATCACGaa                                                                                               <  4:84374/127‑1 (MQ=255)                                                                         ggCTTTCGGGCAGCGGTGTATCGGCAACGGTCACGCTGACCCCTGCCGAGGTATTGCCGGCGGCATCGGTCTGCACCAGCACGAGGTTCTCACCTGCGGCCAGCGGTGCCTCCAGGTCAATCACGaa                                                                                               >  3:84374/1‑127 (MQ=255)                                                                          gCTTTCGGGCAGCGGTGTATCGGCAACGGTCACGCTGACCCCTGCCGAGGTATTGCCGGCGGCATCGGTCTGCACCAGCACGAGGTTCTCACCTGCGGCCAGCGGTGCCTCCAGGTCAATCACGAAGGTGCCATTTGGCGCCACGGTGc                                                                        <  7:110058/149‑1 (MQ=255)                                                                                  cagggcgcagtcatcggtactggcaccgtggcgccaaatggcaccttcgtgattgacctggagGCACCAGCACGAGGTTCTCACCTGCGGCCAGCGGTGc                                                                                                                 >  8:162680‑M1/64‑100 (MQ=255)                                                                                  cagggcgcagtcatcggtactggcaccgtggcgccaaatggcaccttcgtgattgacctggagGCACCAGCACGAGGTTCTCACCTGCGGCCAGCGGTGc                                                                                                                 <  7:162680‑M1/37‑1 (MQ=255)                                                                                    aGCGGTGTATCGGCAACGGTCACGCTGACCCCTGCCGAGGTATTGCCGGCGGCATCGGTCTGCACCAGCACGAGGTTCTCACCTGCGGCCAGCGGTGCCTCCAGGTCAATCACGAAGGTGCCATTTGGCGCCACGGTGCCAGTACCGAt                                                              >  6:253458/1‑149 (MQ=255)                                                                                      cGGTGTATCGGCAACGGTCACGCTGACCCCTGCCGAGGTATTGCCGGCGGCATCGGTCTGCACCAGCACGAGGTTCTCACCTGCGGCCAGCGGTGCCTCCAGGTCCATCACGAAGGTGCCATTTGGCGCCACGGTGCCAGTACCGATGa                                                            <  7:69565/149‑1 (MQ=255)                                                                                        gtgtATGGGCAACTGTCACGCTGACCCAGGCCTAGGTATGGCCGTCGGCATCGGGCTGCACCAGCTCGATGGTCTCACCTGCGGCCAGCGGTGCCTCCAGGTCAATCACGAAGGTGCCATTTGGCGCCACGGTGCCAGTACCGATGACt                                                          <  7:263317/149‑1 (MQ=255)                                                                                        gtgtATCGGCAACGGTCACGCTGACCCCTGCCGAGGTATTGCCGGCGGCATCGGTCTGCACCAGCACGAGGTTCTCACCTGCGGCCAGCGGTGCCTCCAGGTCAATCACGAAGGTGCCATTTGGCGCCACGGTGCCAGTACCGATGACt                                                          >  7:266032/1‑149 (MQ=255)                                                                                           tATCGGCAACGGTCACGCTGACCCCTGCCGAGGTATTGCCGGCGGCATCGGTCTGCACCAGCACGAGGTTCTCACCTGCGGCCAGCGGTGCCTCCAGGTCAATCACGAAGGTGCCATTTGGCGCCACGGTGCCAGTACCGATGACTgc                                                        <  4:51798/148‑1 (MQ=255)                                                                                                gCAACGGTCACGCTGACCCCTGCCGAGGTATTGCCGGCGGCATCGGTCTGCACCAGCACGAGGTTCTCCCCTGCGGCCAGCGGTGCCTCCAGGTCAATCACGAAGGTGCCATTTGGCGCCACGGTGCCAGTACCGAGGACTGCGCCCTg                                                  >  7:160530/1‑149 (MQ=255)                                                                                                gCAACGGTCACGCTGACCCCTGCCGAGGTATTGCCGGCGGCATCGGTCTGCACCAGCACGAGGTTCTCACCTGCGGCCAGCGGTGCCTCCAGGTCAATCACGAAGGTGCCATTTGGCGCCCCGGTGCCAGTACCGATGACTGCGCCCTg                                                  <  8:257406/149‑1 (MQ=255)                                                                                                gCAACGGTCACGCTGACCCCTGCCGAGGTATTGCCGGCGGCATCGGTCTGCACCAGCACGAGGTTCTCACCTGCGGCCAGCGGTGCCTCCAGGTCAATCACGAAGGTGCCATTTGGCGCCACGGTGCCAGTACCGATGACTGCGCCCTg                                                  >  4:142052/1‑149 (MQ=255)                                                                                                  aaCGGTCACGCTGACCCCTGCCGAGGTATTGCCGGCGGCATCGGTCTGCACCAGCACGAGGTTCTCACCTGCGGCCAGCGGTGCCTCCAGGTCAATCACGAAGGTGCCATTTGGCGCCACGGTGCCAGTACCGATGACTGCGCCCTggg                                                <  8:266032/149‑1 (MQ=255)                                                                                                     ggTCACGCTGACCCCTGCCGAGGTATTGCCGGCGGCATCGGTCTGCACCAGCACGAGGTTCTCACCTGCGGCCAGCGGTGCCTCCAGGTCAATCACGAAGGTGCCATTTGGCGCCACGGTGCCa                                                                      <  3:123665/124‑1 (MQ=255)                                                                                                     ggTCACGCTGACCCCTGCCGAGGTATTGCCGGCGGCATCGGTCTGCACCAGCACGAGGTTCTCACCTGCGGCCAGCGGTGCCTCCAGGTCAATCACGAAGGTGCCATTTGGCGCCACGGTGCCa                                                                      >  4:123665/1‑124 (MQ=255)                                                                                                     ggTCACGCTGACCCCTGCCGAGGTATTGCCGGCGGCATCGGTCTGCACCAGCACGAGGTTCTCACCTGCGGCCAGCGGTGCCTCCAGGTCAATCACGAAGGTGCCATTTGGCGCCACGGTGCCAGTACCGATGACTGCGCCCTGGGCAt                                             >  6:165798/1‑149 (MQ=255)                                                                                                                ccccTGCCGAGGTATTGCCGGCGGCATCGGTCTGCACCAGCACGAGGTTCTCACCTGCGGCCAGCGGTGCCTCCAGGTCAATCACGAAGGTGCCATTTGGCGCCACGGTGCCAGTACCGATGACTGCGCCCTGGGCATCACGCACTTc                                   >  7:137951/1‑148 (MQ=255)                                                                                                                 cccTGCCGAGGTATTGCCGGCGGCATCGGTCTGCACCAGCACGAGGTTCTCACCTGCGGCCAGCGGTGCCTCCAGGTCAATCACGAAGGTGCCATTTGGCGCCACGGTGCCAGTACCGATGACTGCGCCCTGGGCATCACGCACTTCCa                                 <  5:253458/149‑1 (MQ=255)                                                                                                                    tGCCGAGGTATTGCCGGCGGCATCGGTCTGCACCAGCACGAGGTTCTCACCTGCGGCCAGCGGTGCCTCCAGGTCAATCACGAAGGTGCCATTTGGCGCCACGGTGCCAGTACCGAt                                                              >  3:177381/1‑117 (MQ=255)                                                                                                                    tGCCGAGGTATTGCCGGCGGCATCGGTCTGCACCAGCACGAGGTTCTCACCTGCGGCCAGCGGTGCCTCCAGGTCAATCACGAAGGTGCCATTTGGCGCCACGGTGCCAGTACCGAt                                                              <  4:177381/117‑1 (MQ=255)                                                                                                                      ccGAGGTATTGCCGGCGGCATCGGTCTGCACCAGCACGAGGTTCTCACCTGCGGCCAGCGGTGCCTCCAGGTCAATCACGAAGGTGCCATTTGGCGCCACGGTGCCAGTACCGATGACTGCGCCCTGGGCATCACGCACTTCCACtgtg                            <  8:137951/149‑1 (MQ=255)                                                                                                                         aGGTATTGCCGGCGGCATCGGTCTGCACCAGCACGAGGTTCTCACCTGCGGCCAGCGGTGCCTCCAGGTCAATCACGAAGGTGCCATTTGGCGCCACGGTGCCAGTACCGATGACTGCGCCCTGGGCATCACGCACTTCCACTGTGGCa                         >  8:125932/1‑149 (MQ=255)                                                                                                                                gCCGGCGGCATCGGTCTGCACCAGCACGAGGTTCTCACCTGCGGCCAGCGGTGCCTCCAGGTCAATCACGAAGGTGCCATTTGGCGCCACGGTGCCAGTACCGATGACTGCGCCCTGGGCATCACGCACTTCCACTGTGGCACCGGGc                   <  3:142052/148‑1 (MQ=255)                                                                                                                                gCCGGCGGCATCGGTCTGCACCAGCACGAGGTTCTCACCTGCGGCCAGCGGTGCCTCCAGGTCAATCACGAAGGTGCCATTTGGCGCCACGGTGCCAGTACCGATGACTGCGCCCTGGGCATCACGCACTTCCACTGTGGCACCGGGCt                  >  7:247577/1‑149 (MQ=255)                                                                                                                                             gTCTGCACCAGCACGAGGTTCTCACCTGCGGCCAGCGGTGCCTCCAGGTCAATCACGAAGGTGCCATTTGGCGCCACGGTGCCAGTACCGATGACTGCGCCCTGGGCATCACGCACTTCCACTGTGGCACCGGGCTCGCCACGGCCAGa     >  5:252286/1‑149 (MQ=255)                                                                                                                                                tGCACCAGCACGAGGTTCTCACCTGCGGCCAGCGGTGCCTCCAGGTCAATCACGAAGGTGCCATTTGGCGCCACGGTGCCAGTACCGATGACTGCGCCCTGGGCATCACGCACTTCCACTGTGGCACCGGGCTCGCCACGGCCAGacac  >  3:296199/1‑149 (MQ=255)                                                                                                                                                 |                                                                                                                                                    CTTCCACCTGGGTATCTGCCGGTGCGGTACCGGAAACGCTGGAGCCGTCACCGGCCACCACCACGCCGCTCGGGCTTTCGGGCAGCGGTGTATCGGCAACGGTCACGCTGACCCCTGCCGAGGTATTGCCGGCGGCATCGGTCTGCACCAGCACGAGGTTCTCACCTGCGGCCAGCGGTGCCTCCAGGTCAATCACGAAGGTGCCATTTGGCGCCACGGTGCCAGTACCGATGACTGCGCCCTGGGCATCACGCACTTCCACTGTGGCACCGGGCTCGCCACGGCCAGACAC  >  NC_002947/936300‑936591

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.