New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	936444 =	45 (0.910)	3 (0.060)	3/246	NT	6.5%	coding (9178/18933 nt)	PP_0806	surface adhesion protein
	?	NC_002947	936481 =	43 (0.910)					coding (9141/18933 nt)	PP_0806	surface adhesion protein

AACGCTGGAGCCGTCACCGGCCACCACCACGCCGCTCGGGCTTTCGGGCAGCGGTGTATCGGCAACGGTCACGCTGACCCCTGCCGAGGTATTGCCGGCGGCATCGGTCTGCACCAGCACGAGGTTCTCACCTGCGGCCAGCGGTGCCTCCAGGTCAATCACGAAGGTGCCATTTGGCGCCACGGTGCCAGTACCGATGACTGCGCCCTGGGCATCACGCACTTCCACTGTGGCACCGGGCTCGCCACGGCCAGACACGGCCAGGCTGCCATCGCTTGCCACCACGTCGGC  >  NC_002947/936334‑936624                                                                                                                                                    |                                                                                                                                                aaCGCTGGAGCCGTCACCGGCCACCACCACGCCGCTCGGGCTTTCGGGCAGCGGTGTATCGGCAACGGTCACGCTGACCCCTGCCGAGGTATTGCCGGCGGCATCGGTCTGCACCAGCACGAGGTTCTCACCTGCGGCCAGCGGTGCCt                                                                                                                                                <  5:257758/149‑1 (MQ=255)       gccgtggcgagcccggtgccacagtggaagtgcgtgatgcccagggcgcagtcatcggtactggcaccgtggcgccaaatggcaccttcgtgattgacctggagGCACCAGCACGAGGTTCTCACCTGCGGCCAGCGGTGCCTCCa                                                                                                                                             >  2:197542‑M1/105‑146 (MQ=255)           ccGTCACCGGCCACCACCACGCCGCTCGGGCTTTCGGGCAGCGGTGTATCGGCAACGGTCACGCTGACCCCTGCCGAGGTATTGCCGGCGGCATCGGTCTGCACCAGCACGAGGTTCTCACCTGCGGCCAGCGGTGCCTCCAGGTCAAt                                                                                                                                      <  3:85533/149‑1 (MQ=255)             gTCACCGGCCACCACCACGCCGCTCGGGCTTTCGGGCAGCGGTGTATCGGCAACGGTCACGCTGACCCCTGCCGAGGTATTGCCGGCGGCATCGGTCTGCACCAGCACGAGGTTCTCACCTGCGGCCAGCGGTGCCTCCAGGTCAATCa                                                                                                                                    <  6:70062/149‑1 (MQ=255)              tCACCGGCCACCACCACGCCGCTCGGGCTTTCGGGCAGCGGTGTATCGGCAACGGTCACGCTGACCCCTGCCGAGGTATTGCCGGCGGCATCGGTCTGCACCAGCACGAGGTTCTCACCTGCGGCCAGCGGTGCCTCCAGGTCAATCAc                                                                                                                                   >  5:290409/1‑149 (MQ=255)                aCCGGCCACCACCACGCCGCTCGGGCTTTCGGGCAGCGGTGTATCGGCAACGGTCACGCTGACCCCTGCCGAGGTATTGCCGGCGGCATCGGTCTGCACCAGCACGAGGTTCTCACCTGCGGCCAGCGGTGCCTCCAGGTCAATCACg                                                                                                                                  >  3:51798/1‑148 (MQ=255)                         caccacGCCGCTCGGGCTTTCGGGCAGCGGTGTATCGGCAACGGTCACGCTGACCCCTGCCGAGGTATTGCCGGCGGCATCGGTCTGCACCAGCACGAGGTTCTCACCTGCGGACAGCGGTGCCTCCAGGTCAATCACGAAGGTGCCAt                                                                                                                        >  5:93839/1‑149 (MQ=255)                              cgccgcTCGGGCTTTCGGGCAGCGGTGTATCGGCAACGGTCACGCTGACCCCTGCCGAGGTATTGCCGGCGGCATCGGTCTGCACCAGCACGAGGTTCTCACCTGCGGCCAGCGGTGCCTCCAGGTCAATCACGAAGGTGCCATTTGgc                                                                                                                   <  3:247082/149‑1 (MQ=255)                                    tCGGGCTTTCGGGCAGCGGTGTATCGGCAACGGTCACGCTGACCCCTGCCGAGGTATTGCCGGCGGCATCGGTCTGCACCAGCACGAGGTTCTCACCTGCGGCCAGCGGTGCCTCCAGGTCAATCACGAAGGTGCCATTTGGCGCCACg                                                                                                             >  8:69565/1‑149 (MQ=255)                                      gggCTTTCGGGCAGCGGTGTATCGGCAACGGTCACGCTGACCCCTGCCGAGGTATTGCCGGCGGCATCGGTCTGCACCAGCACGAGGTTCTCACCTGCGGCCAGCGGTGCCTCCAGGTCAATCACGAAGGTGCCATTTGGCGCCACg                                                                                                             <  6:93839/147‑1 (MQ=255)                                      gggCTTTCGGGCAGCGGTGTATCGGCAACGGTCACGCTGACCCCTGCCGAGGTATTGCCGGCGGCATCGGTCTGCACCAGCACGAGGTTCTCACCTGCGGCCAGCGGTGCCTCCAGGTCAATCACGAAGGTGCCATTTGGCGCCACGGt                                                                                                           <  2:30005/149‑1 (MQ=255)                                       ggCTTTCGGGCAGCGGTGTATCGGCAACGGTCACGCTGACCCCTGCCGAGGTATTGCCGGCGGCATCGGTCTGCACCAGCACGAGGTTCTCACCTGCGGCCAGCGGTGCCTCCAGGTCAATCACGaa                                                                                                                                <  4:84374/127‑1 (MQ=255)                                       ggCTTTCGGGCAGCGGTGTATCGGCAACGGTCACGCTGACCCCTGCCGAGGTATTGCCGGCGGCATCGGTCTGCACCAGCACGAGGTTCTCACCTGCGGCCAGCGGTGCCTCCAGGTCAATCACGaa                                                                                                                                >  3:84374/1‑127 (MQ=255)                                        gCTTTCGGGCAGCGGTGTATCGGCAACGGTCACGCTGACCCCTGCCGAGGTATTGCCGGCGGCATCGGTCTGCACCAGCACGAGGTTCTCACCTGCGGCCAGCGGTGCCTCCAGGTCAATCACGAAGGTGCCATTTGGCGCCACGGTGc                                                                                                         <  7:110058/149‑1 (MQ=255)                                                  aGCGGTGTATCGGCAACGGTCACGCTGACCCCTGCCGAGGTATTGCCGGCGGCATCGGTCTGCACCAGCACGAGGTTCTCACCTGCGGCCAGCGGTGCCTCCAGGTCAATCACGAAGGTGCCATTTGGCGCCACGGTGCCAGTACCGAt                                                                                               >  6:253458/1‑149 (MQ=255)                                                    cGGTGTATCGGCAACGGTCACGCTGACCCCTGCCGAGGTATTGCCGGCGGCATCGGTCTGCACCAGCACGAGGTTCTCACCTGCGGCCAGCGGTGCCTCCAGGTCCATCACGAAGGTGCCATTTGGCGCCACGGTGCCAGTACCGATGa                                                                                             <  7:69565/149‑1 (MQ=255)                                                      gtgtATGGGCAACTGTCACGCTGACCCAGGCCTAGGTATGGCCGTCGGCATCGGGCTGCACCAGCTCGATGGTCTCACCTGCGGCCAGCGGTGCCTCCAGGTCAATCACGAAGGTGCCATTTGGCGCCACGGTGCCAGTACCGATGACt                                                                                           <  7:263317/149‑1 (MQ=255)                                                      gtgtATCGGCAACGGTCACGCTGACCCCTGCCGAGGTATTGCCGGCGGCATCGGTCTGCACCAGCACGAGGTTCTCACCTGCGGCCAGCGGTGCCTCCAGGTCAATCACGAAGGTGCCATTTGGCGCCACGGTGCCAGTACCGATGACt                                                                                           >  7:266032/1‑149 (MQ=255)                                                         tATCGGCAACGGTCACGCTGACCCCTGCCGAGGTATTGCCGGCGGCATCGGTCTGCACCAGCACGAGGTTCTCACCTGCGGCCAGCGGTGCCTCCAGGTCAATCACGAAGGTGCCATTTGGCGCCACGGTGCCAGTACCGATGACTgc                                                                                         <  4:51798/148‑1 (MQ=255)                                                              gCAACGGTCACGCTGACCCCTGCCGAGGTATTGCCGGCGGCATCGGTCTGCACCAGCACGAGGTTCTCCCCTGCGGCCAGCGGTGCCTCCAGGTCAATCACGAAGGTGCCATTTGGCGCCACGGTGCCAGTACCGAGGACTGCGCCCTg                                                                                   >  7:160530/1‑149 (MQ=255)                                                              gCAACGGTCACGCTGACCCCTGCCGAGGTATTGCCGGCGGCATCGGTCTGCACCAGCACGAGGTTCTCACCTGCGGCCAGCGGTGCCTCCAGGTCAATCACGAAGGTGCCATTTGGCGCCCCGGTGCCAGTACCGATGACTGCGCCCTg                                                                                   <  8:257406/149‑1 (MQ=255)                                                              gCAACGGTCACGCTGACCCCTGCCGAGGTATTGCCGGCGGCATCGGTCTGCACCAGCACGAGGTTCTCACCTGCGGCCAGCGGTGCCTCCAGGTCAATCACGAAGGTGCCATTTGGCGCCACGGTGCCAGTACCGATGACTGCGCCCTg                                                                                   >  4:142052/1‑149 (MQ=255)                                                                aaCGGTCACGCTGACCCCTGCCGAGGTATTGCCGGCGGCATCGGTCTGCACCAGCACGAGGTTCTCACCTGCGGCCAGCGGTGCCTCCAGGTCAATCACGAAGGTGCCATTTGGCGCCACGGTGCCAGTACCGATGACTGCGCCCTggg                                                                                 <  8:266032/149‑1 (MQ=255)                                                                   ggTCACGCTGACCCCTGCCGAGGTATTGCCGGCGGCATCGGTCTGCACCAGCACGAGGTTCTCACCTGCGGCCAGCGGTGCCTCCAGGTCAATCACGAAGGTGCCATTTGGCGCCACGGTGCCa                                                                                                       >  4:123665/1‑124 (MQ=255)                                                                   ggTCACGCTGACCCCTGCCGAGGTATTGCCGGCGGCATCGGTCTGCACCAGCACGAGGTTCTCACCTGCGGCCAGCGGTGCCTCCAGGTCAATCACGAAGGTGCCATTTGGCGCCACGGTGCCa                                                                                                       <  3:123665/124‑1 (MQ=255)                                                                   ggTCACGCTGACCCCTGCCGAGGTATTGCCGGCGGCATCGGTCTGCACCAGCACGAGGTTCTCACCTGCGGCCAGCGGTGCCTCCAGGTCAATCACGAAGGTGCCATTTGGCGCCACGGTGCCAGTACCGATGACTGCGCCCTGGGCAt                                                                              >  6:165798/1‑149 (MQ=255)                                                                              ccccTGCCGAGGTATTGCCGGCGGCATCGGTCTGCACCAGCACGAGGTTCTCACCTGCGGCCAGCGGTGCCTCCAGGTCAATCACGAAGGTGCCATTTGGCGCCACGGTGCCAGTACCGATGACTGCGCCCTGGGCATCACGCACTTc                                                                    >  7:137951/1‑148 (MQ=255)                                                                               cccTGCCGAGGTATTGCCGGCGGCATCGGTCTGCACCAGCACGAGGTTCTCACCTGCGGCCAGCGGTGCCTCCAGGTCAATCACGAAGGTGCCATTTGGCGCCACGGTGCCAGTACCGATGACTGCGCCCTGGGCATCACGCACTTCCa                                                                  <  5:253458/149‑1 (MQ=255)                                                                                  tGCCGAGGTATTGCCGGCGGCATCGGTCTGCACCAGCACGAGGTTCTCACCTGCGGCCAGCGGTGCCTCCAGGTCAATCACGAAGGTGCCATTTGGCGCCACGGTGCCAGTACCGAt                                                                                               <  4:177381/117‑1 (MQ=255)                                                                                  tGCCGAGGTATTGCCGGCGGCATCGGTCTGCACCAGCACGAGGTTCTCACCTGCGGCCAGCGGTGCCTCCAGGTCAATCACGAAGGTGCCATTTGGCGCCACGGTGCCAGTACCGAt                                                                                               >  3:177381/1‑117 (MQ=255)                                                                                    ccGAGGTATTGCCGGCGGCATCGGTCTGCACCAGCACGAGGTTCTCACCTGCGGCCAGCGGTGCCTCCAGGTCAATCACGAAGGTGCCATTTGGCGCCACGGTGCCAGTACCGATGACTGCGCCCTGGGCATCACGCACTTCCACtgtg                                                             <  8:137951/149‑1 (MQ=255)                                                                                       aGGTATTGCCGGCGGCATCGGTCTGCACCAGCACGAGGTTCTCACCTGCGGCCAGCGGTGCCTCCAGGTCAATCACGAAGGTGCCATTTGGCGCCACGGTGCCAGTACCGATGACTGCGCCCTGGGCATCACGCACTTCCACTGTGGCa                                                          >  8:125932/1‑149 (MQ=255)                                                                                              gCCGGCGGCATCGGTCTGCACCAGCACGAGGTTCTCACCTGCGGCCAGCGGTGCCTCCAGGTCAATCACGAAGGTGCCATTTGGCGCCACGGTGCCAGTACCGATGACTGCGCCCTGGGCATCACGCACTTCCACTGTGGCACCGGGc                                                    <  3:142052/148‑1 (MQ=255)                                                                                              gCCGGCGGCATCGGTCTGCACCAGCACGAGGTTCTCACCTGCGGCCAGCGGTGCCTCCAGGTCAATCACGAAGGTGCCATTTGGCGCCACGGTGCCAGTACCGATGACTGCGCCCTGGGCATCACGCACTTCCACTGTGGCACCGGGCt                                                   >  7:247577/1‑149 (MQ=255)                                                                                                          tggaggcaccgctggccgcaggtgagaacctcgtgctggtgcCTCCAGGTCAATCACGAAGGTGCCATTTGGCGCCACGGTGCCAGTACCGATGACTGCGCCCTGGGCATCACGCACTTCCACTGTGGCACCGGGCTCGCCACGGc                                          >  2:197542‑M2/43‑146 (MQ=255)                                                                                                           gTCTGCACCAGCACGAGGTTCTCACCTGCGGCCAGCGGTGCCTCCAGGTCAATCACGAAGGTGCCATTTGGCGCCACGGTGCCAGTACCGATGACTGCGCCCTGGGCATCACGCACTTCCACTGTGGCACCGGGCTCGCCACGGCCAGa                                      >  5:252286/1‑149 (MQ=255)                                                                                                              tGCACCAGCACGAGGTTCTCACCTGCGGCCAGCGGTGCCTCCAGGTCAATCACGAAGGTGCCATTTGGCGCCACGGTGCCAGTACCGATGACTGCGCCCTGGGCATCACGCACTTCCACTGTGGCACCGGGCTCGCCACGGCCAGacac                                   >  3:296199/1‑149 (MQ=255)                                                                                                               gcaccgctggccgcaggtgagaacctcgtgctggtgcCTCCAGGTCAATCACGAAGGTGCCATTTGGCGCCACGGTGCCAGTACCGATGACTGCGCCCTg                                                                                   <  7:162680‑M2/63‑1 (MQ=255)                                                                                                               gcaccgctggccgcaggtgagaacctcgtgctggtgcCTCCAGGTCAATCACGAAGGTGCCATTTGGCGCCACGGTGCCAGTACCGATGACTGCGCCCTg                                                                                   >  8:162680‑M2/38‑100 (MQ=255)                                                                                                                     gCACGAGGTTCTCACCTGCGGCCAGCGGTGCCTCCAGGTCAATCACGAAGGTGCCATTTGGCGCCACGGTGCCAGTACCGATGACTGCGCCCTGGGCATCACGCACTTCCACTGTGGCACCGGGCTCGCCACGGCCAGACACGGCCAgg                            >  6:101991/1‑149 (MQ=255)                                                                                                                              tctcACCTGCGGCCAGCGGTGCCTCCAGGTCAATCACGAAGGTGCCATTTGGCGCCACGGTGCCAGTACCGATGACTGCGCCCTGGGCATCACGCACTTCCACTGTGGCACCGGGCTCGCCACGGCCAGACACGGCCAGGCTGCCATCg                   >  7:271271/1‑149 (MQ=255)                                                                                                                                    cTGCGGCCAGCGGTGCCTCCAGGTCAATCACGAAGGTGCCATTTGGCGCCACGGTGCCAGTACCGATGACTGCGCCCTGGGCATCACGCACTTCCACTGTGGCACCGGGCTCGCCACGGcc                                         <  4:191283/121‑1 (MQ=255)                                                                                                                                    cTGCGGCCAGCGGTGCCTCCAGGTCAATCACGAAGGTGCCATTTGGCGCCACGGTGCCAGTACCGATGACTGCGCCCTGGGCATCACGCACTTCCACTGTGGCACCGGGCTCGCCACGGcc                                         >  3:191283/1‑121 (MQ=255)                                                                                                                                    cTGCGGCCAGCGGTGCCTCCAGGTCAATCACGAAGGTGCCATTTGGCGCCACGGTGCCAGTACCGATGACTGCGCCCTGGGCATCACGCACTTCCACTGTGGCACCGGGCTCGCCACGGCCAGACACGGCCAGGCTGCCATCGCTTGcc             >  6:273014/1‑149 (MQ=255)                                                                                                                                     tGCGGCCAGCGGTGCCTCCAGGTCAATCACGAAGGTGCCATTTGGCGCCACGGTGCCAGTACCGATGACTGCGCCCTGGGCATCACGCACTTCCACTGTGGCACCGGGCTCGCCACGGCCAGACACGGCCAGGCTGCCATCGCTTGcca            >  2:240095/1‑149 (MQ=255)                                                                                                                                       cGGCCAGCGGTGCCTCCAGGTCAATCACGAAGGTGCCATTTGGCGCCACGGTGCCAGTACCGATGACTGCGCCCTGGGCATCACGCACTTCCACTGTGGCACCGGGCTCGCCACGGCCAGACACGGCCAGGCTGCCATCGCTTGccacc          <  8:247577/149‑1 (MQ=255)                                                                                                                                       cGGCCAGCGGTGCCTCCAGGTCAATCACGAAGGTGCCATTTGGCGCCACGGTGCCAGTACCGATGACTGCGCCCTGGGCATCACGCACTTCCACTGTGGCACCGGGCTCGCCACGGCCAGACACGGCCAGGCTGCCATCGCTTGcca            <  5:101991/147‑1 (MQ=255)                                                                                                                                         gCCAGCGGTGCCTCCAGGTCAATCACGAAGGTGCCATTTGGCGCCACGGTGCCAGTACCGATGACTGCGCCCTGGGCATCACGCACTTCCACTGTGGCACCGGGCTCGCCACGGCCAGACACGGCCAGGCTGCCATCGCTTGCcaccac        >  8:112294/1‑149 (MQ=255)                                                                                                                                           cAGCGGTGCCTCCAGGTCAATCACGAAGGTGCCATTTGGCGCCACGGTGCCAGTACCGATGACTGCGCCCTGGGCATCACGCACTTCCACTCTGGCACCGGGCTCGCCACGGCCAGACACGGCCAGGCTGCCATCGCTTGCCACCACGt      >  8:87028/1‑149 (MQ=255)                                                                                                                                             gCGGTGCCTCCAGGTCAATCACGAAGGTGCCATTTGGCGCCACGGTGCCAGTACCGATGACTGCGCCCTGGGCATCACGCACTTCCACTGTGGCACCGGGCTCGCCACGGCCAGACACGGCCAGGCTGCCATCGCTTGCCACCACGTCg    <  5:150084/149‑1 (MQ=255)                                                                                                                                               ggtgcCTCCAGGTCAATCACGAAGGTGCCATTTGGCGCCACGGTGCCAGTACCGATGACTGCGCCCTGGGCATCACGCACTTCCACTGTGGCACCGGGCTCGCCACGGCCAGACACGGCCAGGCTGCCATCGCTTGCCACCACGTCGGc  <  7:125932‑M2/144‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                                AACGCTGGAGCCGTCACCGGCCACCACCACGCCGCTCGGGCTTTCGGGCAGCGGTGTATCGGCAACGGTCACGCTGACCCCTGCCGAGGTATTGCCGGCGGCATCGGTCTGCACCAGCACGAGGTTCTCACCTGCGGCCAGCGGTGCCTCCAGGTCAATCACGAAGGTGCCATTTGGCGCCACGGTGCCAGTACCGATGACTGCGCCCTGGGCATCACGCACTTCCACTGTGGCACCGGGCTCGCCACGGCCAGACACGGCCAGGCTGCCATCGCTTGCCACCACGTCGGC  >  NC_002947/936334‑936624

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.