New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1069924	36 (0.730)	3 (0.060)	3/240	NT	7.3%	coding (1086/1362 nt)	aroP‑I	aromatic amino acid transport protein
	?	NC_002947	= 1069962	42 (0.910)					coding (1124/1362 nt)	aroP‑I	aromatic amino acid transport protein

GGCCAGCCAGGGCGATGCGCCGCGTCAGTTGCTGAAGGTGAGCCGTAGCGGCGTGCCGCTGACCGCGCTGGCCGTGTCGGCCTTTGCGACCGGCCTGTGCGTGCTGATCAATTACCTGATGCCGGGCGGGGCCTTTGGTTTGCTGATGGCGTTGGCAGTGTCCGCGTTGGTGATCAACTGGGCGAGCATCAGCATTACCCACCTCAAATTCCGCAAGGCCAAGCTGGCCGCCGGGATCACCCCCTTCTACAAAAGCCTGGGGCACCCGCTGACCAACTACCTGTGCCTGGCGTT  >  NC_002947/1069777‑1070070                                                                                                                                                    |                                                                                                                                                   ggccAGCCAGGGCGATGCGCCGCGTCAGTTGCTGAAGGTGAGCCGTAGCGGCGTGCCGCTGACCGCGCTGGCCGTGTCGGCCTTTGCGACCGGCCTGTGCGTGCTGATCAATTACCTGATGCCGGGCGGGGCCTTTGGTTTGCTGATgg                                                                                                                                                   >  2:74274/1‑149 (MQ=255)  gccagccaGGGCGATGCGCCGCGTCAGTTGCTGAAGGTGAGCCGTAGCGGCGTGCCGCTGACCGCGCTGGCCGTGTCGGCCTTTGCGACCGGCCTGTGCGTGCTGATCAATTACCTGATGCCGGGCGGGGCCTTTGGTTTGCTGATGGc                                                                                                                                                  >  6:233852/1‑149 (MQ=255)   ccagccagGGCGATGCGCCGCGTCAGTTGCTGAAGGTGAGCCGTAGCGGCGTGCCGCTGACCGCGCTGGCCGTGTCGGCCTTTGCGACCGGCCTGTGCGTGCTGATCAATTACCTGATGCCGGGCGGGGCCTTTGGTTTGCTGATGGCg                                                                                                                                                 <  3:300651/149‑1 (MQ=255)    cagccagGGCGATGCGCCGCGTCAGTTGCTGAAGGTGAGCCGTAGCGGCGTGCCGCTGACCGCGCTGGCCGTGTCGGCCTTTGCGACCGGCCTGTGCGTGCTGATCAATTACCTGATGCCGGGCGGGGCCTTTGGTTTGCTGATGGc                                                                                                                                                  >  2:92764/1‑147 (MQ=255)    cagccagGGCGATGCGCCGCGTCAGTTGCTGAAGGTGAGCCGTAGCGGCGTGCCGCTGACCGCGCTGGCCGTGTCGGCCTTTGCGACCGGCCTGTGCGTGCTGATCAATTACCTGATGCCGGGCGGGGCCTTTGGTTTGCTGATGGc                                                                                                                                                  <  1:92764/147‑1 (MQ=255)    cagccagGGCGATGCGCCGCGTCAGTTGCTGAAGGTGAGCCGTAGCGGCGTGCCGCTGACCGCGCTGGCCGTGTCGGCCTTTGCGACCGGCCTGTGCGTGCTGATCAATTACCTGATGCCGGGCGGGGCCTTTGGTTTGCTGATGGCGt                                                                                                                                                >  8:239342/1‑149 (MQ=255)     agccagGGCGATGCGCCGCGTCAGTTGCTGAAGGTGAGCCGTAGCGGCGTGCCGCTGACCGCGCTGGCCGTGTCGGCCTTTGCGACCGGCCTGTGCGTGCTGATCAATTACCTGATGCCGGGCGGGG‑CTTTGGTTTGCTGATGGCGTTg                                                                                                                                              <  8:20708/149‑1 (MQ=255)       ccagGGCGATGCGCCGCGTCAGTTGCTGAAGGTGAGCCGTAGCGGCGTGCCGCTGACCGCGCTGGCCGTGTCGGCCTTTGCGACCGGCCTGTGCGTGCTGATCAATTACGTGATGCCGTGCTGGGCGTTTGGTTTGCTGATGGCGTTgg                                                                                                                                             <  7:197261/149‑1 (MQ=255)               aTGCGCCGCGTCAGTTGCTGAAGGTGAGCCGTAGCGGCGTGCCGCTGACCGCGCTGGCCGTGTCGGCCTTTGCGACCGGCCTGTGCGTGCTGATCAATTACCTGATGCCGGGCGGGGCCTTTGGTTTGCTGATGGCGTTGGCAGTGTcc                                                                                                                                     <  1:222814/149‑1 (MQ=255)                     cgcgTCAGTTGCTGAAGGTGAGCCGTAGCGGCGTGCCGCTGACCGCGCTGGCCGTGTCGGCCTTTGCGACCGGCCTGTGCGTGCTGATCAATTACCTGATGCCGGGCGGGGCCTTTGGTTTGCTGATGGCGTTGGCAGTGTCCGCGTTg                                                                                                                               <  7:239342/149‑1 (MQ=255)                     cgcgTCAGTTGCTGAAGGTGAGCCGTAGCGGCGTGCCGCTGACCGCGCTGGCCGTGTCGGCCTTTGCGACCGGCCTGTGCGTGCTGATCAATTACCTGATGCCGGGCGGGGCCTTTGGTTTGCTGATGGCGTTGGCAGTGTCCGCGTTg                                                                                                                               >  5:182269/1‑149 (MQ=255)                     cgcgTCAGTTGCTGAAGGTGAGCCGTAGCGGCGTGCCGCTGACCGCGCTGGCCGTGTCGGCCTTTGCGACCGGCCTGTGCGTGCTGATCAATTACCTGATGCCGGGCGGGGCCTTTGGTTTGCTGATGGCGTTGGCAGTGTCCGCGTTg                                                                                                                               <  2:203445/149‑1 (MQ=255)                        gTCAGTTGCTGAAGGTGAGCCGTAGCGGCGTGCCGCTGACCGCGCTGGCCGTGTCGGCCTTTGCGACCGGCCTGTGCGTGCTGATCAATTACCTGATGCCGGGCGGGGCCGTTGGTTTGCTGATGGCGTTGGCAGTGTCCGCGTTGGTg                                                                                                                            >  8:116243/1‑149 (MQ=255)                                 tGAAGGTGAGCCGTAGCGGCGTGCCGCTGACCGCGCTGGCCGTGTCGGCCTTTGCGACCGGCCTGTGCGTGCTGATCAATTACCTGATGCCGGGCGGGGCCTTTGGTTTGCTGATGGCGTTGGCAGTGTCCGCGTTGGTGATCAACTgg                                                                                                                   >  2:298503/1‑149 (MQ=255)                                   aaGGTGAGCCGTAGCGGCGTGCCGCTGACCGCGCTGGCCGTGTCCGCCTTTGCGACCGGCCTGTGCGTGCTGATCAATTACCTGATGCCGGGCGGGGCCTTTGGTTTTCTGATGctcccccagttgatcaccaacgcggacacagccaa                                                                                                                 >  2:151644‑M1/1‑114 (MQ=255)                                    aGGTGAGCCGTAGCGGCGTGCCGCTGACCGCGCTGGCCGTGTCGGCCTTTGCGACCGGCCTGTGCGTGCTGATCAATTACCTGATGCCGGGCGGGGCCTTTGGTTTGCTGATGGCGTTGGCAGTGTCCGCGTTGGTGATCAACTGGGCg                                                                                                                <  4:48001/149‑1 (MQ=255)                                           ccGTAGCGGCGTGCCGCTGACCGCGCTGGCCGTGTCGGCCTTTGCGACCGGCCTGTGCGTGCTGATCAATTACCTGATGCCGGGCGGGGCCTTTGGTTTGCTGATGGCGTTGGCAGTGTCCGCGTTGGTGATCAACTGGGCGAGcatca                                                                                                         >  7:41579‑M2/1‑144 (MQ=255)                                            cGTAGCGGCGTGCCGCTGACCGCGCTGGCCGTGTCGGCCTTTGCGACCGGCGTGTGCGTGCTGATCAATTACCTGATGCCGGGCGGGGCCTTTGGTTTGCTGATGGCGTTGGCAGTGTCCGCGTTGGTGATCAACTGGGCGAGcatcag                                                                                                        >  1:74274‑M2/1‑143 (MQ=255)                                            cGTAGCGGCGTGCCGCTGACCGCGCTGGCCGTGTCGGCCTTTGCGACCGGCCTGTGCGTGCTGATCAATTACCTGATGCCGGGCGGGGCCTTTGGTTTGCTGATGGCGTTGGCAGTGTCCGCGTTGGTGATCAACTGGGCGAGcatcag                                                                                                        <  8:178237‑M2/149‑7 (MQ=255)                                                    cgTGCCGCTGACCGCGCTGGCCGTGTCGGCCTTTGCGACCGGCCTGTGCGTGCTGATCAATTACCTGATGCCGGGCGGGGCCTTTGGTTTGCTGATGctcgcccagttgatcaccaacgcggacactgccaacgccatcagcaaaccaa                                                                                                <  1:101002‑M1/149‑53 (MQ=255)                                                     gTGCCGCTGACCGCGCTGGCCGTGTCGGCCTTTGCGACCGGCCTGTGCGTGCTGATCAATTACCTGATGCCGGGCGGGGCCTTTGGTTTGCTGATGctcgcccagttgatcaccaacgcggacactgccaacgccatcagcaaaccaaa                                                                                               <  1:151644‑M1/149‑54 (MQ=255)                                                               ccGCGCTGGCCGTGTCGGCCTTTGCGACCGGCCTGTGCGTGCTGATCAATTACCTGATGCCGGGCGGGGCCTTTGGTTTGCTGATGGCGTTGGCAGTGTCCGCGTTGGTGATCAACTGGGCGAGCATCAGCATTAccc                                                                                                <  1:22221/138‑1 (MQ=255)                                                               ccGCGCTGGCCGTGTCGGCCTTTGCGACCGGCCTGTGCGTGCTGATCAATTACCTGATGCCGGGCGGGGCCTTTGGTTTGCTGATGGCGTTGGCAGTGTCCGCGTTGGTGATCAACTGGGCGAGCATCAGCATTAccc                                                                                                >  2:22221/1‑138 (MQ=255)                                                                       gCCGTGTCGGCCTTTGCGACCGGCCTGTGCGTGATGATCAATTACCTGATGCCGGGCGGGGCCTTTGGTTTGCTGATGGCGTTGGCAGTGTCCGCGTTGGTGATCAACTGGGCGAGCATCAGCATTACCCACCTCAAATTCCGCAAGGc                                                                             >  6:223480/1‑149 (MQ=255)                                                                                       cGACCGGCCTGTGCGTGCTGATCAATTACCTGATGCCGGGCGGGGCCTTTGGTTTGCTGATGGCGTTGGCAGTGTCCGCGTTGGTGATCAACTGGGCGAGCATCAGCATTACCCACCTCAAATTCCGCAAGGCCAAGCTGGCCGCCgg                                                              <  7:178237/148‑1 (MQ=255)                                                                                             gCCTGTGCGTGCTGATCAATTACCTGATGCCGGGCGGGGCCTTTGGTTTGCTGATGGCGTTGGCAGTGTCCGCGTTGGTGATCAACTGGGCGAGCATCAGCATTACCCACCTCAAATTCCGCAAGGCCAAGCTGGCCGCCGGGATCAcc                                                       <  6:182269/149‑1 (MQ=255)                                                                                                  tgcgtgcTGATCAATTACCTGATGCCGGGCGGGGCCTTTGGTTTGCTGATGGCGTTGGCAGTGTCCGCGTTGGTGATCAACTGGGCGAGCATCAGCATTACCCACCTCAAATTCCGCAAGGCCAAGCTGGCCGCCGGGATCAccccc                                                    <  5:233852/147‑1 (MQ=255)                                                                                                       gcTGATCAATTACCTGATGCCGGGCGGGGCCTTTGGTTTGCTGATGGCGTTGGCAGTGTCCGCGTTGGTGATCAACTGGGCGAGCATCAGCATTACCCACCTCAAATTCCGCAAGGCCAAGCTGGCCGCCggg                                                             >  8:36053/1‑133 (MQ=255)                                                                                                       gcTGATCAATTACCTGATGCCGGGCGGGGCCTTTGGTTTGCTGATGGCGTTGGCAGTGTCCGCGTTGGTGATCAACTGGGCGAGCATCAGCATTACCCACCTCAAATTCCGCAAGGCCAAGCTGGCCGCCggg                                                             <  7:36053/133‑1 (MQ=255)                                                                                                        cTGATCAATTACCTGATGCCGGGCGGGGCCTTTGGTTTGCTGATGGCGTTGGCAGTGTCCGCGTTGGTGATCAACTGGGCGAGCATCAGCATTACCCACCTCAAATTCCGAAAGGCCAAGCTGGCCGCCGGGATCACCCCCTTCAACa                                             >  7:105716/1‑148 (MQ=255)                                                                                                           aTCAATTACCTGATGCCGGGCGGGGCCTTTGGTTTGCTGATGGCGTTGGCAGTGTCCGCGTTGGTGATCAACTGGGCGAGCATCAGCATTACCGACCTCAAATTCCGCAAGGCCAAGCTGGCCGCCGGGATCACCCCCTTCTACaaaa                                          <  5:223480/148‑1 (MQ=255)                                                                                                            tCAATTACCTGATGCCGGGCGGGGCCTTTGGTTTGCTGATGGCGTTGGCAGTGTCCGCGTTGGTGATCAACTGGGCGAGCATCAGCATTACCCACCTCAAATTCCGCAAGGCCAAGCTGGCCGCCGGGATCACCCCCTTCTACAAAAGc                                        >  3:93789/1‑149 (MQ=255)                                                                                                                ttACCTGATGCCGGGCGGGGCCTTTGGTTTGCTGATGGCGTTGGCAGTGTCCGCGTTGGTGATCAACTGGGCGAGCATCAGCATTACCCACCTCAAATTCCGCAAGGCCAAGCTGGCCGCCGGGATCACCCCCTTCTACAAAAGCCTgg                                    <  6:169355/149‑1 (MQ=255)                                                                                                                 tACCTGATGCCGGGCGGGGCCTTTGGTTTGCTGATGGCGTTGGCAGTGTCCGCGTTGGTGATCAACTGGGCGAGCATCAGCATTACCCACCTCaaa                                                                                        >  1:243496/1‑96 (MQ=255)                                                                                                                 tACCTGATGCCGGGCGGGGCCTTTGGTTTGCTGATGGCGTTGGCAGTGTCCGCGTTGGTGATCAACTGGGCGAGCATCAGCATTACCCACCTCaaa                                                                                        <  2:243496/96‑1 (MQ=255)                                                                                                                   ccTGATGCCGGGCGGGGCCTTTGGTTTGCTGATGGTGTTGGCAGTGTCCGCGTTGGTGATCAACTGGGCGAGCATCAGCATTACCCACCTCAAATTCCGCAAGGCCAAGCTGGCCGCCGGGATCACCCCCTTCTACAAAAGCCTGGGGc                                 >  7:38412/1‑149 (MQ=255)                                                                                                                     tGATGCCGGGCGGGGCCTTTGGTTTGCTGATGGCGTTGGCAGTGTCCGCGTTGGTGATCAACTGGGCGAGTATCAGCATTACCCACCTCAAATTCCGCAAGGCCAAGCTGGCCGCCGGGATCACCCCCTTCTACAAAAGCCTGGGGCAc                               >  2:273590/1‑149 (MQ=255)                                                                                                                      gATGCCGGGCGGGGCCTTTGGTTTGCTGATGGCGTTGGCAGTGTCCGCGTTGGTGATCAACTGGGCGAGCATCAGCATTACCCACCTCAAATTCCGCAAGGCCAAGCTGGCCGCCGGGATCACCCCCTTCTACAAAAGCCTGGGGCAcc                              >  4:4560/1‑149 (MQ=255)                                                                                                                          ccGGGCGGGGCCTTTGGTTTGCTGATGGCGTTGGCAGTGTCCGAGTTGGTGATCAACTGGGCGAGCATCAGCATTACCCACCTCAAATTCCGCAAGGCCAAGCTGGCCGCCGGGATCACCCCCTTCTACAAAAGCCTGGGGCACCCGCt                          >  1:29725/1‑149 (MQ=255)                                                                                                                           cgggcgggGCCTTTGGTTTGCTGATGGCGTTGGCAGTGTCCGCGTTGGTGATCAACTGGGCGAGCATCAGCATTACCCACCTCAAATTCCGCAAGGCCAAGCTGGCCGCCGGGATCACCCCCTTCTACAAAAGCCTGGGGCACCCGCTg                         <  1:298503/149‑1 (MQ=255)                                                                                                                                     cTTTGGTTTGCTGATGGCGTTGGCAGTGTCCGCGTTGGTGATCAACTGGGCGAGCATCAGCATTACCCACCTCAAATTCCGCAAGGCCAAGCTGGCCGCCGGGATCACCCCCTTCTACAAAAGCCTGGGGCACCCGCTGACCAACTAc                >  7:266929/1‑148 (MQ=255)                                                                                                                                     cTTTGGTTTGCTGATGGCGTTGGCAGTGTCCGCGTTGGTGATCAACTGGGCGAGCATCAGCATTACCCACCTCAAATTCCGCAAGGCCAAGCTGGCCGCCGGGATCACCCCCTTCTACAAAAGCCTGGGGCACCCGCTGACCAACTAc                <  8:266929/148‑1 (MQ=255)                                                                                                                                      tttGGTTTGCTGATGGCGTTGGCAGTGTCCGCGTTGGTGATCAACTGGGCGAGcatcagcaaaccaaaggccccgcccggcatcaggtaattgatcagcacgcacaggccggtcgcaaaggccgacacggccagcgcggtcagcggcac              <  1:151644‑M2/149‑97 (MQ=255)                                                                                                                                       ttGGTTTGCTGATGGCGTTGGCAGTGTCCGCGTTGGTGATCAACTGGGCGAGcatcagcaaaccaaaggccccgcccggcatcaggtaattgatcagcacgcacaggccggtcgcaaaggccgacacggccagcgcggtcagcggcacg             <  1:101002‑M2/149‑98 (MQ=255)                                                                                                                                       ttGGTTTGCTGATGGCGTTGGCAGTGTCCGCGTTGGTGATCAACTGGGCGAGCATCAGCATTACCCACCTCAAATTCCGCAAGGCCAAGCTGGCCGCCGGGATCACCCCCTTCTACAAAAGCCTGGGGCACCCGCTGACCAACTACCtg             >  3:143746/1‑149 (MQ=255)                                                                                                                                          gTTTGCTGATGGCGTTGGCAGTGTCCGCGTTGGTGATCAACTGGGCGAGCATCAGCATTACCCACCTCAAATTCCGCAAGGCCAAGCTGGCCGCCGGGATCACCCCCTTCTACAAAAGCCTGGGGCACCCGCTGACCAACTACCt              <  2:276055/145‑1 (MQ=255)                                                                                                                                          gTTTGCTGATGGCGTTGGCAGTGTCCGCGTTGGTGATCAACTGGGCGAGCATCAGCATTACCCACCTCAAATTCCGCAAGGCCAAGCTGGCCGCCGGGATCACCCCCTTCTACAAAAGCCTGGGGCACCCGCTGACCAACTACCt              >  1:276055/1‑145 (MQ=255)                                                                                                                                          gTTTGCTGATGGCGTTGGCAGTGTCCGCGTTGGTGATCAACTGGGCGAGCATCAGCATTACCCACCTCAAATTCCGCAAGGCCAAGCTGGCCGCCGGGATCACCCCCTTCTACAAAAGCCTGGGGCACCCGCTGACCAACTACCTGTGc          >  3:270936/1‑149 (MQ=255)                                                                                                                                           tttGCTGATGGCGTTGGCAGTGTCCGCGTTGGTGATCAACTGGGCGAGCATCAGCATTACCCACCTCAAATTCCGCAAGGCCAAGCTGGCCGCCGGGATCACCCCCTTCTACAAAAGCCTGGGGCACCCGCTGACCAACTACCTGTGcc         >  5:5321/1‑149 (MQ=255)                                                                                                                                              gCTGATGGTGTTGGCAGTGTCCGCGTTGGTGATCAACTGGGCGAGCATCAGCATTACCCACCTCAAATTCCGCAAGGCCAAGCTGGCCGCCGGGATCACCCCCTTCTACAAAAGCCTGGGGCACCCGCTGACCAACTACCTGTGCCTg       <  8:38412/148‑1 (MQ=255)                                                                                                                                               cTGATGctcgcccagttgatcaccaacgcggacactgccaacgccatcagcaaaccaaaggccccgcccggcatcaggtaattgatcagcacgcacaggccggtcgcaaaggccgacacggccagcgcggtcagcggcacgccgctacg     <  8:178237‑M1/149‑144 (MQ=255)                                                                                                                                               cTGATGctcgcccagttgatcaccaacgcggacactgccaacgccatcagcaaaccaaaggccccgcccggcatcaggtaattgatcagcacgcacacgccggtcgcaaaggccgacacggccagcgcggtcagcggcacgccgctacg     >  1:74274‑M1/1‑6 (MQ=255)                                                                                                                                                tGATGctcgcccagttgatcaccaacgcggacactgccaacgccatcagcaaaccaaaggccccgcccggcatcaggtaattgatcagcacgcacaggccggtcgcaaaggccgacacggccagcgcggtcagcggcacgccgctacgg    >  7:41579‑M1/1‑5 (MQ=255)                                                                                                                                                  aTGGCGTTGGCAGTGTCCGTGTTGGTGATCAACTGGGCGAGCATCAGCATTACCCACCTCAAATTCCGCAAGGCCAAGCTGGCCGCCGGGATCACCCCCTTCTACAAAAGCCTGGGGCACCCGCTGACCAACTACCTGTGCCTGGCGtt  <  2:29725/149‑1 (MQ=255)                                                                                                                                                  aTGGCGTTGGCAGTGTCCGCGTTGGTGATCAACTGGGCGAGCATCAGCATTACCCACCTCAAATTCCGCAAGGCCAAGCTGGCCGCCggg                                                             <  4:202269/90‑1 (MQ=255)                                                                                                                                                  aTGGCGTTGGCAGTGTCCGCGTTGGTGATCAACTGGGCGAGCATCAGCATTACCCACCTCAAATTCCGCAAGGCCAAGCTGGCCGCCggg                                                             >  3:202269/1‑90 (MQ=255)                                                                                                                                                  aTGGCGTTGGCAGTGTCCGCGTTGGTGATCAACTGGGCGAGCATCAGCATTACCCACCTCAAATTCCGCAAGGCCAAGCTGGCCGCCGGGATCACCCCCTTCTACAAAAGCCTGGGGCACCCGCTGACCAACTACCtg             <  6:241116/138‑1 (MQ=255)                                                                                                                                                  aTGGCGTTGGCAGTGTCCGCGTTGGTGATCAACTGGGCGAGCATCAGCATTACCCACCTCAAATTCCGCAAGGCCAAGCTGGCCGCCGGGATCACCCCCTTCTACAAAAGCCTGGGGCACCCGCTGACCAACTACCtg             >  5:241116/1‑138 (MQ=255)                                                                                                                                                    |                                                                                                                                                   GGCCAGCCAGGGCGATGCGCCGCGTCAGTTGCTGAAGGTGAGCCGTAGCGGCGTGCCGCTGACCGCGCTGGCCGTGTCGGCCTTTGCGACCGGCCTGTGCGTGCTGATCAATTACCTGATGCCGGGCGGGGCCTTTGGTTTGCTGATGGCGTTGGCAGTGTCCGCGTTGGTGATCAACTGGGCGAGCATCAGCATTACCCACCTCAAATTCCGCAAGGCCAAGCTGGCCGCCGGGATCACCCCCTTCTACAAAAGCCTGGGGCACCCGCTGACCAACTACCTGTGCCTGGCGTT  >  NC_002947/1069777‑1070070

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.