New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1069924	36 (0.730)	3 (0.060)	3/240	NT	7.3%	coding (1086/1362 nt)	aroP‑I	aromatic amino acid transport protein
	?	NC_002947	= 1069962	42 (0.910)					coding (1124/1362 nt)	aroP‑I	aromatic amino acid transport protein

CCGTAGCGGCGTGCCGCTGACCGCGCTGGCCGTGTCGGCCTTTGCGACCGGCCTGTGCGTGCTGATCAATTACCTGATGCCGGGCGGGGCCTTTGGTTTGCTGATGGCGTTGGCAGTGTCCGCGTTGGTGATCAACTGGGCGAGCATCAGCATTACCCACCTCAAATTCCGCAAGGCCAAGCTGGCCGCCGGGATCACCCCCTTCTACAAAAGCCTGGGGCACCCGCTGACCAACTACCTGTGCCTGGCGTTCATCGTGCTGATCCTGGTAGTGATGTACCT  >  NC_002947/1069819‑1070100                                                                                                                                                |                                                                                                                                           ccGTAGCGGCGTGCCGCTGACCGCGCTGGCCGTGTCGGCCTTTGCGACCGGCCTGTGCGTGCTGATCAATTACCTGATGCCGGGCGGGGCCTTTGGTTTGCTGATGGCGTTGGCAGTGTCCGCGTTGGTGATCAACTGGGCGAGcatca                                                                                                                                       >  7:41579‑M2/1‑144 (MQ=255)  cGTAGCGGCGTGCCGCTGACCGCGCTGGCCGTGTCGGCCTTTGCGACCGGCGTGTGCGTGCTGATCAATTACCTGATGCCGGGCGGGGCCTTTGGTTTGCTGATGGCGTTGGCAGTGTCCGCGTTGGTGATCAACTGGGCGAGcatcag                                                                                                                                      >  1:74274‑M2/1‑143 (MQ=255)  cGTAGCGGCGTGCCGCTGACCGCGCTGGCCGTGTCGGCCTTTGCGACCGGCCTGTGCGTGCTGATCAATTACCTGATGCCGGGCGGGGCCTTTGGTTTGCTGATGGCGTTGGCAGTGTCCGCGTTGGTGATCAACTGGGCGAGcatcag                                                                                                                                      <  8:178237‑M2/149‑7 (MQ=255)                     ccGCGCTGGCCGTGTCGGCCTTTGCGACCGGCCTGTGCGTGCTGATCAATTACCTGATGCCGGGCGGGGCCTTTGGTTTGCTGATGGCGTTGGCAGTGTCCGCGTTGGTGATCAACTGGGCGAGCATCAGCATTAccc                                                                                                                              <  1:22221/138‑1 (MQ=255)                     ccGCGCTGGCCGTGTCGGCCTTTGCGACCGGCCTGTGCGTGCTGATCAATTACCTGATGCCGGGCGGGGCCTTTGGTTTGCTGATGGCGTTGGCAGTGTCCGCGTTGGTGATCAACTGGGCGAGCATCAGCATTAccc                                                                                                                              >  2:22221/1‑138 (MQ=255)                             gCCGTGTCGGCCTTTGCGACCGGCCTGTGCGTGATGATCAATTACCTGATGCCGGGCGGGGCCTTTGGTTTGCTGATGGCGTTGGCAGTGTCCGCGTTGGTGATCAACTGGGCGAGCATCAGCATTACCCACCTCAAATTCCGCAAGGc                                                                                                           >  6:223480/1‑149 (MQ=255)                                             cGACCGGCCTGTGCGTGCTGATCAATTACCTGATGCCGGGCGGGGCCTTTGGTTTGCTGATGGCGTTGGCAGTGTCCGCGTTGGTGATCAACTGGGCGAGCATCAGCATTACCCACCTCAAATTCCGCAAGGCCAAGCTGGCCGCCgg                                                                                            <  7:178237/148‑1 (MQ=255)                                                   gCCTGTGCGTGCTGATCAATTACCTGATGCCGGGCGGGGCCTTTGGTTTGCTGATGGCGTTGGCAGTGTCCGCGTTGGTGATCAACTGGGCGAGCATCAGCATTACCCACCTCAAATTCCGCAAGGCCAAGCTGGCCGCCGGGATCAcc                                                                                     <  6:182269/149‑1 (MQ=255)                                                        tgcgtgcTGATCAATTACCTGATGCCGGGCGGGGCCTTTGGTTTGCTGATGGCGTTGGCAGTGTCCGCGTTGGTGATCAACTGGGCGAGCATCAGCATTACCCACCTCAAATTCCGCAAGGCCAAGCTGGCCGCCGGGATCAccccc                                                                                  <  5:233852/147‑1 (MQ=255)                                                             gcTGATCAATTACCTGATGCCGGGCGGGGCCTTTGGTTTGCTGATGGCGTTGGCAGTGTCCGCGTTGGTGATCAACTGGGCGAGCATCAGCATTACCCACCTCAAATTCCGCAAGGCCAAGCTGGCCGCCggg                                                                                           >  8:36053/1‑133 (MQ=255)                                                             gcTGATCAATTACCTGATGCCGGGCGGGGCCTTTGGTTTGCTGATGGCGTTGGCAGTGTCCGCGTTGGTGATCAACTGGGCGAGCATCAGCATTACCCACCTCAAATTCCGCAAGGCCAAGCTGGCCGCCggg                                                                                           <  7:36053/133‑1 (MQ=255)                                                              cTGATCAATTACCTGATGCCGGGCGGGGCCTTTGGTTTGCTGATGGCGTTGGCAGTGTCCGCGTTGGTGATCAACTGGGCGAGCATCAGCATTACCCACCTCAAATTCCGAAAGGCCAAGCTGGCCGCCGGGATCACCCCCTTCAACa                                                                           >  7:105716/1‑148 (MQ=255)                                                                 aTCAATTACCTGATGCCGGGCGGGGCCTTTGGTTTGCTGATGGCGTTGGCAGTGTCCGCGTTGGTGATCAACTGGGCGAGCATCAGCATTACCGACCTCAAATTCCGCAAGGCCAAGCTGGCCGCCGGGATCACCCCCTTCTACaaaa                                                                        <  5:223480/148‑1 (MQ=255)                                                                  tCAATTACCTGATGCCGGGCGGGGCCTTTGGTTTGCTGATGGCGTTGGCAGTGTCCGCGTTGGTGATCAACTGGGCGAGCATCAGCATTACCCACCTCAAATTCCGCAAGGCCAAGCTGGCCGCCGGGATCACCCCCTTCTACAAAAGc                                                                      >  3:93789/1‑149 (MQ=255)                                                                      ttACCTGATGCCGGGCGGGGCCTTTGGTTTGCTGATGGCGTTGGCAGTGTCCGCGTTGGTGATCAACTGGGCGAGCATCAGCATTACCCACCTCAAATTCCGCAAGGCCAAGCTGGCCGCCGGGATCACCCCCTTCTACAAAAGCCTgg                                                                  <  6:169355/149‑1 (MQ=255)                                                                       tACCTGATGCCGGGCGGGGCCTTTGGTTTGCTGATGGCGTTGGCAGTGTCCGCGTTGGTGATCAACTGGGCGAGCATCAGCATTACCCACCTCaaa                                                                                                                      >  1:243496/1‑96 (MQ=255)                                                                       tACCTGATGCCGGGCGGGGCCTTTGGTTTGCTGATGGCGTTGGCAGTGTCCGCGTTGGTGATCAACTGGGCGAGCATCAGCATTACCCACCTCaaa                                                                                                                      <  2:243496/96‑1 (MQ=255)                                                                         ccTGATGCCGGGCGGGGCCTTTGGTTTGCTGATGGTGTTGGCAGTGTCCGCGTTGGTGATCAACTGGGCGAGCATCAGCATTACCCACCTCAAATTCCGCAAGGCCAAGCTGGCCGCCGGGATCACCCCCTTCTACAAAAGCCTGGGGc                                                               >  7:38412/1‑149 (MQ=255)                                                                           tGATGCCGGGCGGGGCCTTTGGTTTGCTGATGGCGTTGGCAGTGTCCGCGTTGGTGATCAACTGGGCGAGTATCAGCATTACCCACCTCAAATTCCGCAAGGCCAAGCTGGCCGCCGGGATCACCCCCTTCTACAAAAGCCTGGGGCAc                                                             >  2:273590/1‑149 (MQ=255)                                                                            gATGCCGGGCGGGGCCTTTGGTTTGCTGATGGCGTTGGCAGTGTCCGCGTTGGTGATCAACTGGGCGAGCATCAGCATTACCCACCTCAAATTCCGCAAGGCCAAGCTGGCCGCCGGGATCACCCCCTTCTACAAAAGCCTGGGGCAcc                                                            >  4:4560/1‑149 (MQ=255)                                                                                ccGGGCGGGGCCTTTGGTTTGCTGATGGCGTTGGCAGTGTCCGAGTTGGTGATCAACTGGGCGAGCATCAGCATTACCCACCTCAAATTCCGCAAGGCCAAGCTGGCCGCCGGGATCACCCCCTTCTACAAAAGCCTGGGGCACCCGCt                                                        >  1:29725/1‑149 (MQ=255)                                                                                 cgggcgggGCCTTTGGTTTGCTGATGGCGTTGGCAGTGTCCGCGTTGGTGATCAACTGGGCGAGCATCAGCATTACCCACCTCAAATTCCGCAAGGCCAAGCTGGCCGCCGGGATCACCCCCTTCTACAAAAGCCTGGGGCACCCGCTg                                                       <  1:298503/149‑1 (MQ=255)                                                                                           cTTTGGTTTGCTGATGGCGTTGGCAGTGTCCGCGTTGGTGATCAACTGGGCGAGCATCAGCATTACCCACCTCAAATTCCGCAAGGCCAAGCTGGCCGCCGGGATCACCCCCTTCTACAAAAGCCTGGGGCACCCGCTGACCAACTAc                                              <  8:266929/148‑1 (MQ=255)                                                                                           cTTTGGTTTGCTGATGGCGTTGGCAGTGTCCGCGTTGGTGATCAACTGGGCGAGCATCAGCATTACCCACCTCAAATTCCGCAAGGCCAAGCTGGCCGCCGGGATCACCCCCTTCTACAAAAGCCTGGGGCACCCGCTGACCAACTAc                                              >  7:266929/1‑148 (MQ=255)                                                                                            tttGGTTTGCTGATGGCGTTGGCAGTGTCCGCGTTGGTGATCAACTGGGCGAGcatcagcaaaccaaaggccccgcccggcatcaggtaattgatcagcacgcacaggccggtcgcaaaggccgacacggccagcgcggtcagcggcac                                            <  1:151644‑M2/149‑97 (MQ=255)                                                                                             ttGGTTTGCTGATGGCGTTGGCAGTGTCCGCGTTGGTGATCAACTGGGCGAGcatcagcaaaccaaaggccccgcccggcatcaggtaattgatcagcacgcacaggccggtcgcaaaggccgacacggccagcgcggtcagcggcacg                                           <  1:101002‑M2/149‑98 (MQ=255)                                                                                             ttGGTTTGCTGATGGCGTTGGCAGTGTCCGCGTTGGTGATCAACTGGGCGAGCATCAGCATTACCCACCTCAAATTCCGCAAGGCCAAGCTGGCCGCCGGGATCACCCCCTTCTACAAAAGCCTGGGGCACCCGCTGACCAACTACCtg                                           >  3:143746/1‑149 (MQ=255)                                                                                                gTTTGCTGATGGCGTTGGCAGTGTCCGCGTTGGTGATCAACTGGGCGAGCATCAGCATTACCCACCTCAAATTCCGCAAGGCCAAGCTGGCCGCCGGGATCACCCCCTTCTACAAAAGCCTGGGGCACCCGCTGACCAACTACCt                                            >  1:276055/1‑145 (MQ=255)                                                                                                gTTTGCTGATGGCGTTGGCAGTGTCCGCGTTGGTGATCAACTGGGCGAGCATCAGCATTACCCACCTCAAATTCCGCAAGGCCAAGCTGGCCGCCGGGATCACCCCCTTCTACAAAAGCCTGGGGCACCCGCTGACCAACTACCt                                            <  2:276055/145‑1 (MQ=255)                                                                                                gTTTGCTGATGGCGTTGGCAGTGTCCGCGTTGGTGATCAACTGGGCGAGCATCAGCATTACCCACCTCAAATTCCGCAAGGCCAAGCTGGCCGCCGGGATCACCCCCTTCTACAAAAGCCTGGGGCACCCGCTGACCAACTACCTGTGc                                        >  3:270936/1‑149 (MQ=255)                                                                                                 tttGCTGATGGCGTTGGCAGTGTCCGCGTTGGTGATCAACTGGGCGAGCATCAGCATTACCCACCTCAAATTCCGCAAGGCCAAGCTGGCCGCCGGGATCACCCCCTTCTACAAAAGCCTGGGGCACCCGCTGACCAACTACCTGTGcc                                       >  5:5321/1‑149 (MQ=255)                                                                                                    gCTGATGGTGTTGGCAGTGTCCGCGTTGGTGATCAACTGGGCGAGCATCAGCATTACCCACCTCAAATTCCGCAAGGCCAAGCTGGCCGCCGGGATCACCCCCTTCTACAAAAGCCTGGGGCACCCGCTGACCAACTACCTGTGCCTg                                     <  8:38412/148‑1 (MQ=255)                                                                                                        aTGGCGTTGGCAGTGTCCGTGTTGGTGATCAACTGGGCGAGCATCAGCATTACCCACCTCAAATTCCGCAAGGCCAAGCTGGCCGCCGGGATCACCCCCTTCTACAAAAGCCTGGGGCACCCGCTGACCAACTACCTGTGCCTGGCGtt                                <  2:29725/149‑1 (MQ=255)                                                                                                        aTGGCGTTGGCAGTGTCCGCGTTGGTGATCAACTGGGCGAGCATCAGCATTACCCACCTCAAATTCCGCAAGGCCAAGCTGGCCGCCggg                                                                                           <  4:202269/90‑1 (MQ=255)                                                                                                        aTGGCGTTGGCAGTGTCCGCGTTGGTGATCAACTGGGCGAGCATCAGCATTACCCACCTCAAATTCCGCAAGGCCAAGCTGGCCGCCggg                                                                                           >  3:202269/1‑90 (MQ=255)                                                                                                        aTGGCGTTGGCAGTGTCCGCGTTGGTGATCAACTGGGCGAGCATCAGCATTACCCACCTCAAATTCCGCAAGGCCAAGCTGGCCGCCGGGATCACCCCCTTCTACAAAAGCCTGGGGCACCCGCTGACCAACTACCtg                                           >  5:241116/1‑138 (MQ=255)                                                                                                        aTGGCGTTGGCAGTGTCCGCGTTGGTGATCAACTGGGCGAGCATCAGCATTACCCACCTCAAATTCCGCAAGGCCAAGCTGGCCGCCGGGATCACCCCCTTCTACAAAAGCCTGGGGCACCCGCTGACCAACTACCtg                                           <  6:241116/138‑1 (MQ=255)                                                                                                            cGTTGGCAGTGTCCGCGTTGGTGATCAACTGGGCGAGCATCAGCATTACCCACCTCAAATTCCGCAAGGCCAAGCTGGCCGCCGGGATCACCCCCTTCTACAAAAGCCTGGGGCACCCGCTGACCAACTACCTGTGCCTGGCGTTCATc                            <  3:4560/149‑1 (MQ=255)                                                                                                              ttGGCTGTGTCCGCGTTGGTGATCAACTGGGGGAGcatcagaaaaccaaaggccccgcccggcatcaggtaattgatcagcacgcacaggccggtcgcaaaggcggacacggccagcgcggtcagcggcacgccgctacggctcacctt                          >  2:151644‑M2/1‑35 (MQ=255)                                                                                                                   aGTGTCCGCGTTGGTGATCAACTGGGCGAGCATCAGCATTACCCACCTCAAATTCCGCAAGGCCAAGCTGGCCGCCGGGATCACCCCCTTCTACAAAAGCCTGGGGCACCCGCTGACCAACTACCTGTGCCTGGCGTTCATCGTGCTGa                     <  4:93789/149‑1 (MQ=255)                                                                                                                      gtCCGCGTTGGTGATCAACT‑GGCGACCATCACCAATACCCACCTAAAATTCCGCAAGGACAAGCATGCCGCCGGGATCACCCCCTTCTAAAAAAGCCTGGGGCACCCGCAGACCAACTAACATTGCCTGGCCTTAAAAGTGCTGaaact                 >  2:230606/1‑145 (MQ=255)                                                                                                                          gcgTTGGTGATCAACTGGGCGAGCATCAGCATTACCCACCTCAAATTCCGCAAGGCCAAGCTGGCCGCCGGGATCACCCCCTTCTACAAAAGCCTGGGGCACCCGCTGACCAACTAcc                                             <  4:209641/118‑1 (MQ=255)                                                                                                                          gcgTTGGTGATCAACTGGGCGAGCATCAGCATTACCCACCTCAAATTCCGCAAGGCCAAGCTGGCCGCCGGGATCACCCCCTTCTACAAAAGCCTGGGGCACCCGCTGACCAACTAcc                                             >  3:209641/1‑118 (MQ=255)                                                                                                                               ggTGATCAACTGGGCGAGCATCAGCATTACCCACCTCAAATTCCGCAAGGCCAAGCTGGCCGCCGGGATCACCCCCTTCTACAAAAGCCTGGGGCACCCGCTGACCAACTACCTGTGCCTGGCGTTCAt                             <  7:213025/129‑1 (MQ=255)                                                                                                                               ggTGATCAACTGGGCGAGCATCAGCATTACCCACCTCAAATTCCGCAAGGCCAAGCTGGCCGCCGGGATCACCCCCTTCTACAAAAGCCTGGGGCACCCGCTGACCAACTACCTGTGCCTGGCGTTCAt                             >  8:213025/1‑129 (MQ=255)                                                                                                                               ggTGATCAACTGGGCGAGCATCAGCATTACCCACCTCAAATTCCGCAAGGCCAAGCTGGCCGCCGGGATCACCCCCTTCTACAAAAGCCTGGGGCACCCGCTGACCAACTACCTGTGCCTGGCGTTCATCGTGCTGATCCTGGTAGTg          <  6:5321/148‑1 (MQ=255)                                                                                                                                   aTCAACTGGGCGAGCATCAGCATTACCCACCTCAAATTCCGCAAGGCCAAGCTGGCCGCCGGGATCACCCCCTTCTACAAAAGCCTGGGGCACCCGCTGACCAACTACCTGTGCCTGGCGTTCATCGTGCTGATCCTGGTAGTGATGt      <  3:262228/148‑1 (MQ=255)                                                                                                                                      aaCTGGGCGAGCATCAGCATTAGCCACCTCAAATTCCGCAAGGCCAAGCTGGCCGCCGGGATCACCCCCTTCTACAAAAGCCTGGGGCACCCGCTGACCAACTACCTGTGCCTGGCGTTCATCGTGCTGATCCTGGTAGTGATGTACCt  <  4:270936/149‑1 (MQ=255)                                                                                                                                                |                                                                                                                                           CCGTAGCGGCGTGCCGCTGACCGCGCTGGCCGTGTCGGCCTTTGCGACCGGCCTGTGCGTGCTGATCAATTACCTGATGCCGGGCGGGGCCTTTGGTTTGCTGATGGCGTTGGCAGTGTCCGCGTTGGTGATCAACTGGGCGAGCATCAGCATTACCCACCTCAAATTCCGCAAGGCCAAGCTGGCCGCCGGGATCACCCCCTTCTACAAAAGCCTGGGGCACCCGCTGACCAACTACCTGTGCCTGGCGTTCATCGTGCTGATCCTGGTAGTGATGTACCT  >  NC_002947/1069819‑1070100

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.