New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1419549	27 (0.550)	17 (0.350)	15/250	NT	39.8%	intergenic (‑38/+98)	PP_1242/PP_1244	hypothetical protein/hypothetical protein
	?	NC_002947	= 1419636	25 (0.520)					intergenic (‑125/+11)	PP_1242/PP_1244	hypothetical protein/hypothetical protein

GGCAGGGGATGCCGGGTTCGATGCGGAACAGCGGGTGAGTGTTGTTTTCGCCTTGGTAGAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGG‑C‑TCTTC‑GCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCTGACCTGCTAATGCAAGGTGTGAGGCTCTGTGGGTAAATGCGACCGCATCTGCAACTG  >  NC_002947/1419403‑1419697                                                                                                                                                    |                                                                                                                                                       ggCAGGGGATGCCGGGTTCGATGCGGAACAGCGGGTGAGTGTTGTTTTCGCCTTGGTAGAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGG‑Cct                                                                                                                                                      >  2:39047‑M1/1‑147 (MQ=255) ggCAGGGGATGCCGGGTTCGATGCGGAACAGCGGGTGAGTGTTGTTTTCGCCTTGGTAGAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGG‑Cc                                                                                                                                                       >  6:282823‑M1/1‑147 (MQ=255)      gggATGCCGGGTTCGATGCGGAACAGCGGGTGAGTGTTGTTTTCGCCTTGGTAGAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGGATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGG‑Cctcttcg                                                                                                                                                 >  8:146888‑M1/1‑142 (MQ=255)        gATGCCGGGTTCGATGCGGAACAGCGGGTGAGTGTTGTTTTCGCCTTGGTAGAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGG‑Cctcttcgcg                                                                                                                                               <  1:39047‑M1/149‑10 (MQ=255)          tGCCGGGTTCGATGCGGAACAGCGGGTGAGTGTTGTTTTCGCCTTGGTAGAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGG‑Cctcttcgcggg                                                                                                                                             <  3:299979‑M1/149‑12 (MQ=255)                        cGGAACAGCGGGTGAGTGTTGTTTTCGCCTTGGTAGAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGG‑Cctcttcgcgggcacgcccgctccca                                                                                                                               <  4:191571‑M1/149‑26 (MQ=255)                        cGGAACAGCGGGTGAGTGTTGTTTTCGCCTTGGTAGAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGG‑Cctcttcgcgggcacgcccgctccc                                                                                                                                <  1:214209‑M1/148‑25 (MQ=255)                          gAACAGCGGGTGAGTGTTGTTTTCGCCTTGGTAGAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGG‑Cctcttcgcgggcacgcccgctccca                                                                                                                               >  7:151112‑M1/1‑122 (MQ=255)                              aGCGGGTGAGTGTTGTTTTCGCCTTGGTAGAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGG‑Cctcttcgcgggcacgcccgctcccacagtac                                                                                                                         <  7:82460‑M1/149‑32 (MQ=255)                                   gTGAGTGTTGTTTTCGCCTTGGTAGAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCC‑TCTTC‑GCGGGCACGCCCGCTCCCACAGGTACtgtg                                                                                                                   <  1:257955/149‑1 (MQ=255)                                   gTGAGTGTTGTTTTCGCCTTGGTAGAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGG‑Cctcttcgc                                                                                                                                                >  1:203501‑M1/1‑113 (MQ=255)                                   gTGAGTGTTGTTTTCGCCTTGGTAGAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGG‑Cctcttcgc                                                                                                                                                <  2:203501‑M1/121‑9 (MQ=255)                                        tgttgtTTTCGTGTTGGTAGAATCAGTTCTTGCCGAGTGTGGTTGGTTCTGTTTTGTTGTCGGTGTGCATTGTTTTGTTTCGCTGGATTCTGGGTTGCCTGGGCTGG‑CGTCTTC‑GCGGGCACGCCCGCTCCca                                                                                                                              <  8:73509/133‑1 (MQ=255)                                        tgttgtTTTCGCCTTGGTAGAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCC‑TCTTC‑GCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTg                                                                                                              >  5:242739/1‑149 (MQ=255)                                        tgttgtTTTCGCCTTGGTAGAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGG‑Cctcttcgcgggcacgcccgctccca                                                                                                                               >  7:73509‑M1/1‑108 (MQ=255)                                         gttgttTTCGCCTTGGTAGAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGG‑Cctcttctcgtgcacgcccgctcccacag                                                                                                                            >  8:121490‑M1/1‑107 (MQ=255)                                         gttgttTTCGCCTTGGTAGAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGG‑Cctcttcgcgggcacgcccgctgccacag                                                                                                                            <  7:121490‑M1/135‑29 (MQ=255)                                          ttgttTTCGCCTTGGTAGAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCC‑TCTTC‑GCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCg                                                                                                            >  1:32353/1‑149 (MQ=255)                                          ttgttTTCGCCTTGGTAGAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCC‑TCTTC‑GCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCg                                                                                                            >  1:39741/1‑149 (MQ=255)                                          ttgttTTCGCCTTGGTAGAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGG‑Cctcttcgcgggcacgcccgctccca                                                                                                                               >  8:100115‑M1/1‑106 (MQ=255)                                          ttgttTTCGCCTTGGTAGAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGG‑Cctcttcgcgggcacgcccgctccca                                                                                                                               <  7:100115‑M1/131‑26 (MQ=255)                                                           gAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCC‑TCTTC‑GCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGAc                                                                                            <  2:32353/148‑1 (MQ=255)                                                              gCAGGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCC‑TCTTC‑GCGGGCACGCCCGCTCACACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACCCtg                                                                                        >  7:25476/1‑149 (MQ=255)                                                               cAGGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCC‑TCTTC‑GCGGGCACGCCCGCTCACACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACCCtgt                                                                                       <  8:25476/149‑1 (MQ=255)                                                                 ggTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCC‑TCTTC‑GCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACCCTGTgg                                                                                     <  4:32533/149‑1 (MQ=255)                                                                 ggTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCC‑TCTTC‑GCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACCCTGTgg                                                                                     <  1:3976/149‑1 (MQ=255)                                                                       gCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCC‑TCTTC‑GCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACCCTGTGGGAGc                                                                                 <  2:39741/147‑1 (MQ=255)                                                                       gCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGG‑Cctcttcgcgggcacgcccgctcccacagggtcaccacagccgtcacgcactgcacagtacctgtgggagc                                                                                  <  5:183081‑M1/147‑71 (MQ=255)                                                                        ccGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCC‑TCTTC‑GCGGGCACGCCCGCTCCCCCAGGTACGGTGCAGTGCGTGACGGCTGTGGTGACCCGGTGGGCGCggg                                                                              >  6:287281/1‑149 (MQ=39)                                                                             tgtgGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGG‑Cctcttcgcgggcacgcccgctcccacagggtcaccacagccgtcacgcactgcacagtacctgtgggag                                                                                   >  8:26041‑M1/1‑71 (MQ=255)                                                                             tgtgGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGG‑Cctcttcgcgggcacgcccgctcccacagggtcaccacagccgtcacgcactgcacagtacctgtgggag                                                                                   <  7:26041‑M1/140‑70 (MQ=255)                                                                                    ggTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCC‑TCTTC‑GCGGGCACGCCCCCACCCACACGTTCAGTGGAGTGCGTGACGGCTGTGGTGACCCTGTGGGACCGGGCGTGCCcgcc                                                                    >  3:56941/1‑146 (MQ=255)                                                                                    ggTTCTGGTGTGGTGGCGGTGGGCTTTGATTTGTTTCCCTGGATTCTGGGTTGCCTGGGCGGGCC‑TCTTC‑GCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTCCCCCTGTGGGAGCGGGCGTGCCCGCGaa                                                                  <  7:146888/149‑1 (MQ=37)                                                                                          gttgtgttgtCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCC‑TCTTC‑GCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACCCTGTGGGAGCGGGCGTGCCcgc                                                                     >  3:44067/1‑140 (MQ=255)                                                                                          gttgtgttgtCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCC‑TCTTC‑GCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACCCTGTGGGAGCGGGCGTGCCcgc                                                                     <  4:44067/140‑1 (MQ=255)                                                                                           ttgtgttgtCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCC‑TCTTC‑GCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACCCTGTGGGAGCGGGc                                                                             <  5:281497/131‑1 (MQ=255)                                                                                           ttgtgttgtCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCC‑TCTTC‑GCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACCCTGTGGGAGCGGGc                                                                             >  6:281497/1‑131 (MQ=255)                                                                                              tgttgtCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCC‑TCTTC‑GCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACCCTGTGGGAGCGGGCGTGCCcgc                                                                     >  7:182943/1‑136 (MQ=255)                                                                                              tgttgtCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCC‑TCTTC‑GCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACCCTGTGGGAGCGGGCGTGCCcgc                                                                     <  8:182943/136‑1 (MQ=255)                                                                                                  gtCGGTGGGAATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCC‑TCTTC‑GCGGGCACCCCCGCTCCCACAGGTACAGTGCAGTGAGTGAAGGCTGTGGTGACACTGTGGGAGCGGGCGTACCCGCGAAGAGGCCTGACCTGc                                                    >  5:303462/1‑149 (MQ=37)                                                                                                           cATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCC‑TCTTC‑GCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACCCTGTgg                                                                                     <  2:235146/107‑1 (MQ=255)                                                                                                           cATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCC‑TCTTC‑GCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACCCTGTgg                                                                                     >  1:235146/1‑107 (MQ=255)                                                                                                                        cccTGGATTCTGGGTTGCCTGGGCTGGCC‑TCTTCAGCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCTGACCTGCTAATGCAAGGTGTGAGGctct                               >  1:202355/1‑149 (MQ=255)                                                                                                                         ccTGGATTCTGGGTTGCCTGGGCTGGCC‑TCTTC‑GCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACCCTGTGGGAGCGGGCGTGGCCGCGAAGAGGCCTGACCAGCGAATGCAAGGTGTGAGGCTCtgt                             >  3:55210/1‑149 (MQ=37)                                                                                                                             gATTCTGGGTTGCCTGGGCTGGCC‑TCTTC‑GCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACCCTGTGGGAGCGGGGGTGCCCGCGAAGAGGCCTGACCTGCTAATGCAAGGTGTGAGGCTCTGTGGGt                         <  5:282823/149‑1 (MQ=255)                                                                                                                                          cTGGGCTGGCC‑TCTTC‑GCGGGCACGCCCGCACCCCCAGGTACAGTGGCGTGGGGGACGGGGGTGGGGACCCAGGGGGAGCGGGCGGGGCCGGGCTAAGGCCGGAACAGGGAATTGAAGGGGGGCGGCTGTGTTGGGAAATGCgcacgc             >  4:67316/1‑143 (MQ=255)                                                                                                                                                    c‑tctTC‑GCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCTGACCTGCTAATGCAAGGTGTGAGGCTCTGTGGGTAAATGCGACCGCATCTGCAACTg  >  3:59752/1‑149 (MQ=255)                                                                                                                                                    |                                                                                                                                                       GGCAGGGGATGCCGGGTTCGATGCGGAACAGCGGGTGAGTGTTGTTTTCGCCTTGGTAGAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGG‑C‑TCTTC‑GCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCTGACCTGCTAATGCAAGGTGTGAGGCTCTGTGGGTAAATGCGACCGCATCTGCAACTG  >  NC_002947/1419403‑1419697

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.