| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 1419549 | 27 (0.550) | 17 (0.350) | 15/250 | NT | 39.8% | intergenic (‑38/+98) | PP_1242/PP_1244 | hypothetical protein/hypothetical protein |
| ? | NC_002947 | = 1419636 | 25 (0.520) | intergenic (‑125/+11) | PP_1242/PP_1244 | hypothetical protein/hypothetical protein | |||||
GTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGG‑CTCTTC‑GCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCTGT‑GGTGACCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCTGACCTGCTAATGCAAGGTGTGAGGCTCTGTGGGTAAATGCGACCGCATCTGCAACTGCATCAACGCCGACTCGACCAGCCCCTGTACCGCTTCCATTTCATGGATCACGGCCTGCATCACGATCGAGCTGTGGGCGGTGGGTT > NC_002947/1419500‑1419783 | gtCGGTGGGAATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTC‑GCGGGCACCCCCGCTCCCACAGGTACAGTGCAGTGAGTGAAGGCTGT‑GGTGACACTGTGGGAGCGGGCGTACCCGCGAAGAGGCCTGACCTGc > 5:303462/1‑149 (MQ=37) cccTGGATTCTGGGTTGCCTGGGCTGGCCTCTTCAGCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCTGT‑GGTGACCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCTGACCTGCTAATGCAAGGTGTGAGGctct > 1:202355/1‑149 (MQ=255) ccTGGATTCTGGGTTGCCTGGGCTGGCCTCTTC‑GCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCTGT‑GGTGACCCTGTGGGAGCGGGCGTGGCCGCGAAGAGGCCTGACCAGCGAATGCAAGGTGTGAGGCTCtgt > 3:55210/1‑149 (MQ=37) gATTCTGGGTTGCCTGGGCTGGCCTCTTC‑GCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCTGT‑GGTGACCCTGTGGGAGCGGGGGTGCCCGCGAAGAGGCCTGACCTGCTAATGCAAGGTGTGAGGCTCTGTGGGt < 5:282823/149‑1 (MQ=255) cTGGGCTGGCCTCTTC‑GCGGGCACGCCCGCACCCCCAGGTACAGTGGCGTGGGGGACGGGGGT‑GGGGACCCAGGGGGAGCGGGCGGGGCCGGGCTAAGGCCGGAACAGGGAATTGAAGGGGGGCGGCTGTGTTGGGAAATGCgcacgc > 4:67316/1‑143 (MQ=255) ctctTC‑GCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCTGT‑GGTGACCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCTGACCTGCTAATGCAAGGTGTGAGGCTCTGTGGGTAAATGCGACCGCATCTGCAACTg > 3:59752/1‑149 (MQ=255) ttC‑GCGGGCACGCCCGCTCCCACAGGTACTGTGCTGTGCGTGACGGCGGG‑GGTGACCCTGGGGGAGCGGGCGTGCCCGCGAAGAGGCCTGACCTGCTAATGCAAGGTGTGAGGCTCTGTGGGTAAATGCGACCGCATCTGCAACTGc < 5:287281/147‑1 (MQ=255) aCGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCTGT‑GGTGACCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCTGACCTGCTAATGCAAGGTGTGAGGCTCTGTGGGTAAATGCGACCGCATCTGCAACTGCATCAACGCCg > 4:206107/1‑148 (MQ=255) gCTCCCACAGGTACTGTGCAGTGCGTGACGGCTGT‑GGTGACCCTGTGGGAGCGGGCGTGCCCGCGAAGAGgccagcccaggcaacccagaatccagggaaacaaaacaatgcccaccgacaacacaacagaacccaccacagtcggc < 5:183081‑M2/147‑78 (MQ=255) cTCCCACAGGTACTGTGCAGTGCGTGACGGCTGT‑GGTGACCCTGTGGGAGCGGGCGTGCCCGCGAAGAGgccagcccaggcaacccagaatccagggaaacaaaacaatgcccaccgacaacacaacagaacccaccaca > 8:26041‑M2/1‑69 (MQ=255) cTCCCACAGGTACTGTGCAGTGCGTGACGGCTGT‑GGTGACCCTGTGGGAGCGGGCGTGCCCGCGAAGAGgccagcccaggcaacccagaatccagggaaacaaaacaatgcccaccgacaacacaacagaacccaccaca < 7:26041‑M2/140‑72 (MQ=255) acaGGTACTGTGCAGTGCGTGACGGCTGTAGGTGACCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCTGACCTGCTAATGCAAGGTGTGAGGCTCTGTGGGTAAATGCGACCGCATCTGCAACTGCATCAACGCCGACTCGACCAGcc > 1:23109/1‑149 (MQ=255) ctggTAATGTGCTTTGCGTTACGGCTGG‑TTTGAGCGTGTTGTTGGGGGCGTGACCGAGAAGAGGCCTGACCTGCTAATGCAAGGTGTGAGGCTCTGTTGGTAAATGCGACCGCATCTGCAACTGCATGAACGCCGACTGGACCAGcccc < 4:55210/147‑1 (MQ=255) gTACTGTGCAGTGCGTGACGGCTGT‑GGTGACCCTGTGGGAGCGGGCGTGCCCGCGAAGCGGCCTGACCTGCTAATGCAAGGTGTGAGGCTCTGTGGGTAAATGCGACCGCATCTGCAACTGCATCAACGCCGACTCGACCAGCCCCTg > 5:141614/1‑148 (MQ=255) gTACTGTGCAGTGCGTGACGGCTGT‑GGTGACCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCTGACCTGCTAATGCAAGGTGTGAGGCTCTGTGGGTAAATGCGAcc > 8:283464/1‑108 (MQ=255) gTACTGTGCAGTGCGTGACGGCTGT‑GGTGACCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCTGACCTGCTAATGCAAGGTGTGAGGCTCTGTGGGTAAATGCGACCGCATCTGCAACTGCATc > 4:144085/1‑125 (MQ=255) gTACTGTGCAGTGCGTGACGGCTGT‑GGTGACCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCTGACCTGCTAATGCAAGGTGTGAGGCTCTGTGGGTAAATGCGACCGCATCTGCAACTGCATc < 3:144085/125‑1 (MQ=255) gTGACGGCTGT‑GGTGACCCTGGGGGAGCGGGCGTGCCCGCGAAGAGGCCTGACCTGCTAATGCAAGGTGTGAGGCTCTGTGGGTAAATGCGACCGCATCTGCAACTGCATCAACGCCGACTCGACCAGCCCCTGTACCGCTTCCATTTc < 4:59752/149‑1 (MQ=255) tGAGGGTTGT‑GGTGTCCCTGTGGGAGGGGGCGTGCCCGCGAAGAGGCCTGACGTGCTAATGCAAGGTGTGAGGCTCTGTGGGTAAATGCGACCGCATCTGCAACTGCATCAACGCCGACTCGACCAGCCCCTGTACCGCTTCCATTTCa < 6:303462/149‑1 (MQ=255) cGGCTGT‑GGTGACCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCTGACCTGCTAATGCAAGGTGTGAGGCTCTGTGGGTAAATGCGACCGCATCTGCAACTGCATCAACGCCGACTCGACCAGCCCCTGTACCGCTTCCATTTCATgg < 6:141614/149‑1 (MQ=255) cGGCTGT‑GGTGACCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCTGACCTGCTAATGCAAGGTGTGAGGCTCTGTGGGTAAATGCGACCGCATCTGCAACTGCATCAACGCCGACTCGACCAGCCCCTGTACCGCTTCCATTTCATgg < 2:23109/149‑1 (MQ=255) gtactgtGGGAGCGGGCGTGCCCGCGAAGAGgccagcccaggcaacccagaatccagggaaacaaaacaatgcccaccgacaacacaacagaacccaccacagtcggcaagacctgcttctaccaaggcgaaaacaacactcacccgct < 7:82460‑M2/146‑119 (MQ=255) cTGTGGGAGCGGGCGTGCACGAGAAGAGgccagcccaggcaacccagaatccagggaaacaaaacaatgcccaccgacaacacaacagaacccaccacagtcggcaagacctgcttctaccaaggcgaaaacaac > 8:121490‑M2/1‑28 (MQ=255) cTGTGGCAGCGGGCGTGCCCGCGAAGAGgccagcccaggcaacccagaatccagggaaacaaaacaatgcccaccgacaacacaacagaacccaccacagtcggcaagacctgcttctaccaaggcgaaaacaac < 7:121490‑M2/135‑108 (MQ=255) tgtgGGAGCGGGCGTGCCCGCGAAGAGGCCTGACCTGCTAATGCAAGGTGTGAGGCTCTGTGGGTAAATGCGAc > 4:211489/1‑74 (MQ=255) tgtgGGAGCGGGCGTGCCCGCGAAGAGGCCTGACCTGCTAATGCAAGGTGTGAGGCTCTGTGGGTAAATGCGAc < 3:211489/74‑1 (MQ=255) tgGGAGCGGGCGTGCCCGCGAAGAGgccagcccaggcaacccagaatccagggaaacaaaacaatgcccaccgacaacacaacagaacccaccacagtcggcaagacctgcttctaccaaggcgaaaacaacactcacccgctgttccg < 4:191571‑M2/149‑125 (MQ=255) tgGGAGCGGGCGTGCCCGCGAAGAGgccagcccaggcaacccagaatccagggaaacaaaacaatgcccaccgacaacacaacagaacccaccacagtcggcaagacctgcttctaccaaggcgaaaacaacactcacccgctgttc > 7:151112‑M2/1‑25 (MQ=255) tgGGAGCGGGCGTGCCCGCGAAGAGgccagcccaggcaacccagaatccagggaaacaaaacaatgcccaccgacaacacaacagaacccaccacagtcggcaagacctgcttctaccaaggcgaaaacaaca > 7:73509‑M2/1‑25 (MQ=255) tgGGAGCGGGCGTGCCCGCGAAGAGgccagcccaggcaacccagaatccagggaaacaaaacaatgcccaccgacaacacaacagaacccaccacagtcggcaagacctgcttctaccaaggcgaaaacaa > 8:100115‑M2/1‑25 (MQ=255) tgGGAGCGGGCGTGCCCGCGAAGAGgccagcccaggcaacccagaatccagggaaacaaaacaatgcccaccgacaacacaacagaacccaccacagtcggcaagacctgcttctaccaaggcgaaaacaa < 7:100115‑M2/131‑107 (MQ=255) gggAGCGGGCGTGCCCGCGAAGAGgccagcccaggcaacccagaatccagggaaacaaaacaatgcccaccgacaacacaacagaacccaccacagtcggcaagacctgcttctaccaaggcgaaaacaacactcacccgctgttccg < 1:214209‑M2/148‑125 (MQ=255) gCGGGCGTGCCCGCGAAGAGGCCTGACCTGCTAATGCAAGGTGTGAGGCTCTGTGGGT‑AATGCGACCGCATCTGCAACTGCATCAACGCCGACTCGACCAGCCCCTGTACCGCTTCCATTTCATGGATCACGGCCTGCATCACGATc > 6:118545/1‑147 (MQ=255) gggCGTGCCCGCGAAGAGGCCTGACCTGCTAATGCACGGTGTGAGGCTCTGTGGGTAAATGCGACCGCATCTGCAACTGCATCAACGCCGACTCGACCAGCCCCTGTACCGCTTCCATTTCATGGATCACGGCCTGCATCACGATCGAg > 3:53415/1‑149 (MQ=255) gCGTGCCCGCGAAGAGGCCTGACCTGCTAATGCAAGGTGTGAGGCTCTGTGGGTAAATGCGACCGCATCTGCAACTGCATCAACGCCGACTCGACCAGCCCCTGTACCGCTTCCATTTCATGGATCACGGCCTGCATCACGATCGAGCt > 4:156063/1‑149 (MQ=255) cccGCGAAGAGgccagcccaggcaacccagaatccagggaaacaaaacaatgcccaccgacaacacaacagaacccaccacagtcggcaagacctgcttctaccaaggcgaaaacaacactcacccgctgttccgcatcgaacccggca < 3:299979‑M2/149‑139 (MQ=255) cgcgAAGAGgccagcccaggcaacccagaatccagggaaacaaaacaatgcccaccgacaacacaacagaacccaccacagtcggcaagacctgcttctaccaaggcgaaaacaacactcacccgctgttccgcatcgaacccggcatc < 1:39047‑M2/149‑141 (MQ=255) gcgAAGAGgccagcccaggcaacccagaatccagggaaacaaaacaatgcccaccgacaacacaacagaacccaccacagtcggcaagacctgcttctaccaaggcgaaaacaacactcac > 1:203501‑M2/1‑8 (MQ=255) gcgAAGAGgccagcccaggcaacccagaatccagggaaacaaaacaatgcccaccgacaacacaacagaacccaccacagtcggcaagacctgcttctaccaaggcgaaaacaacactcac < 2:203501‑M2/121‑114 (MQ=255) gcgAAGAGGCCTGACCTGCTAATGCAAGGTGTGAGGCTCTGTGGGTAAATGCGACCGCATCTGCAACTGCATCAACGCCGACTCGACCAGCCCCTGTACCGCTTCCAttt < 3:27419/110‑1 (MQ=255) gcgAAGAGGCCTGACCTGCTAATGCAAGGTGTGAGGCTCTGTGGGTAAATGCGACCGCATCTGCAACTGCATCAACGCCGACTCGACCAGCCCCTGTACCGCTTCCAttt > 4:27419/1‑110 (MQ=255) cgAAGAGgccagcccaggcaacccagaatccagggaaacaaaacaatccccaccgacaacacaacagaacccaccacagtcggcaagacctgcttctaccaaggcgaaaacaacactcacccgctgttccgcatcgaacccggcatccc > 8:146888‑M2/1‑7 (MQ=255) gagGCCTGACCTGCTAATGCAAGGTGTGAGGCTCTGTGGGTAAATGCGACCGCATCTGCAACTGCATCAACGCCGACTCGACCAGCCCCTGTACCGCTTCCATTTCATGGATCACGGCCTGCATCACGATCGAGCTGTGGGCGGTGGGt < 3:156063/149‑1 (MQ=255) gagGCCTGACCTGCTAATGCAAGGTGTGAGGCTCTGTGGGTAAATGCGACCGCATCTGCAACTGCATCAACGCCGACTCGACCAGCCCCTGTACCGCTTCCATTTCATGGATCACGGCCTGCATCACGATCGAGCTGTGGGCGGTGGGt < 3:67316/149‑1 (MQ=255) aggccagcccaggcaacccagaatccagggaaacaaaacaatgcccaccgacaacacaacagaacccaccacagtcggcaagacctgcttctaccaaggcgaaaacaacactcacccgctgttccgcatcgaacccggcatcccctgcc > 2:39047‑M2/1‑2 (MQ=255) ggccagcccaggcaacccagaatccagggaaacaaaacaatgcccaccgacaacacaacagaacccaccacagtcggcaagacctgcttctaccaaggcgaaaacaacactcacccgctgttccgcatcgaacccggcatcccctgcc > 6:282823‑M2/1‑1 (MQ=255) | GTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGG‑CTCTTC‑GCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCTGT‑GGTGACCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCTGACCTGCTAATGCAAGGTGTGAGGCTCTGTGGGTAAATGCGACCGCATCTGCAACTGCATCAACGCCGACTCGACCAGCCCCTGTACCGCTTCCATTTCATGGATCACGGCCTGCATCACGATCGAGCTGTGGGCGGTGGGTT > NC_002947/1419500‑1419783 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |