New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 1596059 = | 43 (0.870) | 6 (0.130) | 6/246 | NT | 14.2% | coding (952/1335 nt) | dctD‑III | C4‑dicarboxylate transport transcriptional regulator |
? | NC_002947 | 1596148 = | 31 (0.650) | coding (863/1335 nt) | dctD‑III | C4‑dicarboxylate transport transcriptional regulator |
GCATTGGCCAGTTCACGCACGTTGCCAGGCCAGTCATGTGACAGCAGCTGCGCCAGCTGTGCACCCGATAGCGGCGGGGCCGCGCGACCAAGCTTTTCACCGGCAGCACGGGCAAAGTGTTCGAACAGCAGCGGAATGTCCTCCCGCCGCTCGCGCAG‑CG‑GTGCCAGGCGCAATTCGGCGACGTTCAGGCGGTAGGCCAGGTCTTCGCGGAAGCGCCCGGCACGAGCCTCCTCGAGCAGGTCAGGCTTGGTCGCAGCAATGATGCGCAGGTCGACGCTGATGCTCTGGTTT > NC_002947/1595911‑1596201 | cgtgttcctcgacgaaatcgagagcatgcccctggccgcaacaggccaagctgttgcgggtgatacaggagcagaagttggagcgcctgggggcaaaccagagcatcagcgtcgacctgcgcatcattgctgcgaccaagcctgacctg < 1:56407‑M1/1‑1 (MQ=255) cgtgttcctcgacgaaatcgagagcatgcccctggcccaacaggccaagctgttgcgggtgatacaggagcagaagttggagcgcctgggggcaaaccagagcatcagcgtcgacctgcgcatcattgctgcgaccaagcctgacctGc < 3:83685‑M1/2‑1 (MQ=255) ttGGCCAGTTCACGCACGTTGCCAGGCCAGTCATGTGACAGCAGCTGCGCCAGCTGTGCACCCGATAGCGGCGGGGCCGCGCGACCAAGCTTTTCACCGGCAGCACGGGCAAAGTGTTCGAACAGCAGCGGAATGTCCTCCCGCCGCTc < 6:66730/149‑1 (MQ=255) cgacgaaatcgagagcatgcccctggcccaacaggccaagctgttgcgggtgatacaggagcagaagttggagcgcctgggggcaaaccagagcatcagcgtcgacctgcgcatcattgctgcgaccaagcctgacctGCt < 8:32756‑M1/3‑1 (MQ=255) cgacgaaatcgagagcatgcccctggcccaacaggccaagctgttgcgggtgatacaggagcagaagttggagcgcctgggggcaaaccagagcatcagcgtcgacctgcgcatcattgctgcgaccaagcctgacctGCt > 7:32756‑M1/139‑141 (MQ=255) ttCACGCACGTTGCCAGGCCAGTCATGTGACAGCAGCTGCGCCAGCTGTGCACCCGATAGCGGCGGGGCCGCGCGACCAAGCTTTTCACCGGCAGCACGGGCAAAGTGTTCGAACAGCAGCGGAATGTCCTCCCGCCGCTCGCGCAG‑Cg > 6:7208/1‑149 (MQ=255) acgcacgTTGCCAGGCCAGTCATGTGACAGCAGCTGCGCCAGCTGTGCACCCGATAGCGGCGGGGCCGCGCGACCAAGCTTTTCACCGGCAGCACGGGCAAAGTGTTCGAACAGCAGCGGAATGTCCTCCCGCCGCTCGCGCAG‑CG‑Gt < 5:42487/148‑1 (MQ=255) acgcacgTTGCCAGGCCAGTCATGTGACAGCAGCTGCGCCAGCTGTGCACCCGATAGCGGCGGGGCCGCGCGACCAAGCTTTTCACCGGCAGCACGGGCAAAGTGTTCGAACAGCAGCGGAATGTCCTCCCGCCGCTCGCGCAG‑CG‑GTg > 7:179141/1‑149 (MQ=255) ggtGCCAGGCCAGTCATGTGACAGCAGCTGCGCCAGCTGTGCACCCGATAGCGGCGGGGCCGCGCGACCAAGCTTTTCACCGGCAGCACGGGCAAAGTGTTCGAACAGCAGCGGAATGTCCTCCCGCCGCTCGCGCAG‑CG‑GTGCCAGgc < 3:295920/147‑1 (MQ=255) caggccagTCATGTGACAGCAGCTGCGCCAGCTGTGCACCCGATAGCGGCGGGGCCGCGCGACCAAGCTTTTCACCGGCAGCACGGGCAAAGTGTTCGAACAGCAGCGGAATGTCCTCCCGCCGCTCGCGCAG‑CG‑GTGCCAGGCGCAAt > 2:156598/1‑149 (MQ=255) tCATGTGACAGCAGCTGCGCCAGCTGTGCACCCGATAGCGGCGGGGCCGCGCGACCAAGCTTTTCACCGGCAGCACGGGCAAAGTGTTCGAACAGCAGCGGAATGTCCTCCCGCCGCt < 5:174601/118‑1 (MQ=255) tCATGTGACAGCAGCTGCGCCAGCTGTGCACCCGATAGCGGCGGGGCCGCGCGACCAAGCTTTTCACCGGCAGCACGGGCAAAGTGTTCGAACAGCAGCGGAATGTCCTCCCGCCGCt > 6:174601/1‑118 (MQ=255) tCATGTGACAGCAGCTGCGCCAGCTGTGCACCCGATAGCGGCGGGGCCGCGCGACCAAGCTTTTCACCGGCAGCACGGGCAAAGTGTTCGAACAGCAGCGGAATGTCCTCCCGCCGCTCGCGCAG‑CG‑GTGCCAGGCGCAATTCgg < 3:173020/145‑1 (MQ=255) tCATGTGACAGCAGCTGCGCCAGCTGTGCACCCGATAGCGGCGGGGCCGCGCGACCAAGCTTTTCACCGGCAGCACGGGCAAAGTGTTCGAACAGCAGCGGAATGTCCTCCCGCCGCTCGCGCAG‑CG‑GTGCCAGGCGCAATTCgg > 4:173020/1‑145 (MQ=255) tCATGTGACAGCAGCTGCGCCAGCTGTGCACCCGATAGCGGCGGGGCCGCGCGACCAAGCTTTTCACCGGCAGCACGGGCAAAGTGTTCGAACAGCAGCGGAATGTCCTCCCGCCGCTCGCGCAG‑CG‑GTGCCAGGCGCAATTCGGCGAc < 3:112952/149‑1 (MQ=255) tCATGTGACAGCAGCTGCGCCAGCTGTGCACCCGATAGCGGCGGGGCCGCGCGACCAAGCTTTTCACCGGCAGCACGGGCAAAGTGTTCGAACAGCAGCGGAATGTCCTCCCGCCGCTCGCGCAG‑CG‑GTGCCAGGCGCAATTCGGCGAc < 7:188008/149‑1 (MQ=255) cATGTGACAGCAGCTGCGCCAGCTGTGCACCCGATAGCGGCGGGGCCGCGCGACCAAGCTTTTCACCGGCAGCACGGGCAAAGTGTTCGAACAGCAGCGGAATGTCCTCCCGCCGCTCGCGCAG‑CG‑GTGCCAGGCGCAATTCg < 5:90995/143‑1 (MQ=255) cATGTGACAGCAGCTGCGCCAGCTGTGCACCCGATAGCGGCGGGGCCGCGCGACCAAGCTTTTCACCGGCAGCACGGGCAAAGTGTTCGAACAGCAGCGGAATGTCCTCCCGCCGCTCGCGCAG‑CG‑GTGCCAGGCGCAATTCg > 6:90995/1‑143 (MQ=255) gtgACAGCAGCTGCGCCAGCTGTGCACCCGATAGCGGCGGGGCCGCGCGACCAAGCTTTTCACCGGCAGCACGGGCAAAGTGTTCGAACAGCAGCGGAATGTCCTCCCGCCGCTCGCGCAG‑AG‑GTGCCAGGCGCAATTCGGCGACGtt > 6:259119/1‑148 (MQ=255) cgcCAGCTGTGCACCCGATAGCGGCGGGGCCGCGTGACCAAGCTTTTCACCGGCAGCACGGGCAAAGTGTTCGAACAGCAGCGGAATGTCCTCCCGCCGCTCGCGCAG‑CG‑GTGCCAGGCGCAATTCGGCGACGTTCAGGCGGTAGGc < 5:271117/147‑1 (MQ=255) cgcCAGCTGTGCACCCGATAGCGGCGGGGCCGCGCGACCAAGCTTTTCACCGGCAGCACGGGCAAAGTGTTCGAACAGCAGCGGAATGTCCTCCCGCCGCTCGCGCAG‑CG‑GTACCAGGCGCAATTCGGCGACGTTCAGGCGGTAGGCCa < 5:7208/149‑1 (MQ=255) gcCAGCTGTTCACCCGATAGCGGCGGGGCCTCGCGAACAAGCTTTTCACCGGCAGCACGGGCAAAGTGTTCGAACAGCAGCGGAATGTCCTCCCGCCGCTCGCGCAG‑CG‑GTGCCAGTCGCAATTCGGCGACGTTCAGGCGGTAGTCCAg < 2:200663/149‑1 (MQ=255) gcCAGCTGTGCACCCGATAGCGGCGGGGCCGCGCGACCAAGCTTTTCACCGGCAGCACGGGCAAAGTGTTCGAACAGCAGCGGACTGTCCTCCCGCCGCTCGCGCAG‑CG‑GTGCCAGGCGCAATTCGGCGACGTTCAGGCGGTAGGCCAg < 2:196041/149‑1 (MQ=255) gcCAGCTGTGCACCCGATAGCGGCGGGGCCGCGCGACCAAGCTTTTCACCAACAGCACGGGCAAAGTGTTCGAACAGCAGCGGAATGTCCTCCCGCCGCTCGCGCAG‑CG‑GTGCCAGGCGCAATTCGGCGACGTTCAGGCGGTAGGCCAg > 1:78332/1‑149 (MQ=255) ccAGCTGTGCACACGATAGCGGCGGGGCCGCGCGACCAAGCTTTTCACCGGCAGCACGGGCAAAGTGTTCGAACAGCAGCGGAATGTCCTCCCGCCGCTCGCGCAG‑CG‑GTGCCAGGCGCAATTCGGCGACGTTCAGGCGGTAGGCCAgg > 5:193814/1‑149 (MQ=255) cAGCTGTGCACCCGATAGCGGCGGGGCCGCGCGACCAAGCTTTTCACCGGCAGCACGGGCAAAGTGTTCGAACAGCAGCGGAATGTCCTCCCGCCGCTCGCGCAG‑CG‑GTGCCAGGCGCAATTCGGCGACGTTCAgg < 7:270336/136‑1 (MQ=255) cAGCTGTGCACCCGATAGCGGCGGGGCCGCGCGACCAAGCTTTTCACCGGCAGCACGGGCAAAGTGTTCGAACAGCAGCGGAATGTCCTCCCGCCGCTCGCGCAG‑CG‑GTGCCAGGCGCAATTCGGCGACGTTCAgg > 8:270336/1‑136 (MQ=255) tgCACCCGATAGCGGCGGGGCCGCGCGACCAAGCTTTTCACCGGCAGCACGGGCAAAGTGTTCGAACAGCAGCGGAATGTCCTCCCGCCGCTCGCGCAG‑CG‑GTGCCAGGCGCAATTCGGCGACGTTCAGGCGGTAGGCCAGGTCTTc < 8:179141/147‑1 (MQ=255) atacaggagcagaagttggagcgcctgggggcaaaccagagcatcagcgtcgacctgcgcatcattgctgcgaccaagcctgacctGCTCGAGGAGGCTCGTGCCAGGCGCAATTCGGCGACGTTCAGGCGGTAGGCCAGGTCTTcgcg < 6:247279‑M1/63‑1 (MQ=255) cccGATAGCGGCGGGGCCGCGCGACCAAGCTTTTCACCGGCAGCACGGGCAAAGTGTTCGAACAGCAGCGGAATGTCCTCCCGCCGCTCGCGCAG‑CG‑GTGCCAGGCGCAATTCGGCGACGTTCAGGCGGTAGGCCAGGTCTTCGCGGaa < 3:110945/149‑1 (MQ=255) cacGATAGCGGCGGGGCCGCGCGACCAAGCTTTTCACCGGCAGCACGGGCAAAGTGTTCGAACAGCAGCGGAATGTCCTCCCGCCGCTCGCGCAG‑CG‑GTGCCAGGCGCAATTCGGCGACGTTCAGGCGGTAGGCCAGGTCTTCGCGGaa < 6:193814/147‑1 (MQ=255) ccGATAGCGGCGGGGCCGCGCGACCAAGCTTTTCACCGGCAGCACGGGCAAAGTGTTCGAACAGCAGCGGAATGTCCTCCCGCCGCTCGCGCAG‑CG‑GTGCCAGGCGCAATTCGGCGCCGTTCAGGCGGTAGGCCAGGTCTTcgcgag > 5:129010/1‑145 (MQ=255) gATAGCGGCGGGGCCGCGCGACCAAGCTTTTCACCGGCAGCACGGGCAAAGTGTTCGAACAGCAGCGGAATGTCCTCCCGCCGCTCGCGCAG‑CG‑GTGCCAGGCGCAATTCGGCGACGTTCAGGCGGTAGGCCAGGTCTTCGCGGAAgcg > 4:26793/1‑149 (MQ=255) gaagttggagcgcctgggggcaaaccagagcatcagcgtcgacctgcgcatcattgctgcgaccaagcctgacctGCTCGCGCAG‑CG‑GTGCCAGGCGCAATTCGGCGACGTTCAGGCGGTAGGCCAGGTCTTCGCGGAAGCGCCCGGCa < 5:71104‑M1/74‑1 (MQ=255) aagttggagcgcctgggggcaaaccagagcatcagcgtcgacctgcgcatcattgctgcgaccaagcctgacctGCTCGAGGAGGCTCGTGCCAGGCGCAATTCGGCGACGTTCAGGCGGTAGGCCAGGTCTTCGCGGAAGCGCCCGGc > 5:247279‑M1/75‑149 (MQ=255) gcgcgACCAAGCTTTTCACCGGCAGCACGGGCAAAGTGTTCGAACAGCAGCGGAATGTCCTCCCGCCGCTCGCGCAG‑CG‑GTGCCAGGCGCAATTCGGCGACGTTCAGGCGGTAGGCCAGGTCTTcgc < 3:201282/127‑1 (MQ=255) gcgcgACCAAGCTTTTCACCGGCAGCACGGGCAAAGTGTTCGAACAGCAGCGGAATGTCCTCCCGCCGCTCGCGCAG‑CG‑GTGCCAGGCGCAATTCGGCGACGTTCAGGCGGTAGGCCAGGTCTTcgc > 4:201282/1‑127 (MQ=255) ccAAGCTTTTCACCGGCAGCACGGGCAAATTGTTCGACCAGCAGCGGAATGTCCTCCCGCCGCTCGCGCAT‑CG‑GTGCCAGGCGCAATTCGGCGACGTTCAGGCGTTAGGCCAGGTCTTCGCGGAAGCGCCCGGCACTAGCCTCCTCGAg < 4:189090/149‑1 (MQ=255) cAAGCTTTTCACCGGCAGCACGGGCAAAGTGTTCGAACAGCAGCGGAATGTCCTCCCGCCGCTCGCGCAG‑CG‑GTGCCAGGCGCAATTCGGCGACGTTCAGGCGGTAGGCCAGGTCTTCGCGGAAGCGCCCGGCACGAGCCTCCTCGAg > 6:241775/1‑148 (MQ=255) ggggcaaaccagagcatcagcgtcgacctgcgcatcattgctgcgaccaagcctgacctGCTCGCGCAG‑CG‑GTGCCAGGCGCAATTCGGCGACGTTCAGGCGGTAGGCCAGGTCTTCGCGGAAGCGCCCGGCACGAGCCTCCTCGAGCa > 6:71104‑M1/60‑149 (MQ=255) ttttCACCGGCAGCACGGGCAAAGTGTTCGAACAGCAGCGGAATGTCCTCCCGCCGCTCGCGCAG‑CG‑GTGCCAGGCGCAATTCGGCGACGTTCAGCCGGTAGGCCAGGTCTTCGCGGAAGCGCCCGGCACGAGCCTCCTCGAGCAGGt > 1:54274/1‑148 (MQ=255) gtttCCCCGGCAGCACGGGCATAGTGTTCGAACAGCAGCGTAATGTCCTCCCGCCGCTCGCGCAG‑CG‑GTGCCAGGCGCAATTCGGCGACGTTCAGGCGGTAGGCCAGGTCTTCGCGGAAGCGCCCGGCACGAGCCTCCTCGAGCAGGTc < 8:111452/148‑1 (MQ=255) aaaccagagcatcagcgtcgacctgcgcatcattgctgcgaccaagcctgacctGCTCGCGCAG‑CG‑GTGCCAGGCGCAATTCGGCGACGTTCAGGCGGTAGGCCAGGTCTTCGCGGAAGCGCCCGGCACGAGCCTCCTCGAGCAGGt < 2:206068‑M1/93‑1 (MQ=255) aaaccagagcatcagcgtcgacctgcgcatcattgctgcgaccaagcctgacctGCTCGCGCAG‑CG‑GTGCCAGGCGCAATTCGGCGACGTTCAGGCGGTAGGCCAGGTCTTCGCGGAAGCGCCCGGCACGAGCCTCCTCGAGCAGGTCa > 1:206068‑M1/55‑149 (MQ=255) gcagcaCGGGCAAAGTGTTCGAACAGCAGCGGAATGTCCTCCCGCCGCTCGCGCAG‑CG‑GTGCCAGGCGCAATTCGGCGACGTTCCGGCGGTAGGCCAGGTCTTCGCGGAAGCGCCCGGCACGAGCCTCCTCGAGCAGGTCAGGCTTGGt < 5:259119/149‑1 (MQ=255) aaGTGTTCGAACAGCAGCGGAATGTCCTCCCGCCGCTCGCGCAG‑CG‑GTGCCAGGCGCAATTCGGCGACGTTCAGGCGGTAGGCCAGGTCTTCGCGGAAGCGCCCGGCACGAGCCTCCTCGAGCAGGTCAGGCTTGGTCGCAGCAatgat < 2:78332/149‑1 (MQ=255) aGTGTTCGAACAGCAGCGGAATGTCCTCCCGCCGCTCGCGCAG‑CG‑GTGCCAGGCGCAATTCGGCGACGTTCAGGCGGTAGGCCAGGTCTTCGCGGAAGCGCCCGGCACGAGCCTCCTCGAGCAgg > 4:107291/1‑125 (MQ=255) aGTGTTCGAACAGCAGCGGAATGTCCTCCCGCCGCTCGCGCAG‑CG‑GTGCCAGGCGCAATTCGGCGACGTTCAGGCGGTAGGCCAGGTCTTCGCGGAAGCGCCCGGCACGAGCCTCCTCGAGCAgg < 3:107291/125‑1 (MQ=255) ttCGAACAGCAGCGGAATGTCCTCCCGCCGCTCGCGCAG‑CG‑GTGCCAGGCGCAATTCGGCGACGTTCAGGCGGTAGGCCAGGTCTTCGCGGAAGCGCCCgg < 5:116915/101‑1 (MQ=255) ttCGAACAGCAGCGGAATGTCCTCCCGCCGCTCGCGCAG‑CG‑GTGCCAGGCGCAATTCGGCGACGTTCAGGCGGTAGGCCAGGTCTTCGCGGAAGCGCCCgg > 6:116915/1‑101 (MQ=255) cGAACAGCAGCGGAATGTCCTCCCGCCGCTCGCGCAG‑CG‑GTGCCAGGCGCAATTCGGCGACGTTCAGGCGGTAGGCCAGGTCTTCGCGGAAGCGCCCGGCACGAGCCTCCTCGAGCAGGTCAGGCTTGGTCGCAGCAATGATGCGCAgg > 1:186215/1‑149 (MQ=255) gAATAGCAGCGGAATGTCCTCCCGCCGCTCGCGCAG‑CG‑GTGCCAGGCGCAATTCGGCGACGTTCAGGCGGTAGGCCAGGTCTTCGCGGAAGCGCCCGGCACGAGCCTCCTCGAGCAGGTCAGGCTTGGTc > 7:295290/1‑130 (MQ=255) gAATAGCAGCGGAATGTCCTCCCGCCGCTCGCGCAG‑CG‑GTGCCAGGCGCAATTCGGCGACGTTCAGGCGGTAGGCCAGGTCTTCGCGGAAGCGCCCGGCACGAGCCTCCTCGAGCAGGTCAGGCTTGGTc < 8:295290/130‑1 (MQ=255) gAACAGCAGCGGAATGTCCTCCCGCCGCTCGCGCAG‑CG‑GTGCCAGGCGCAATTCGGCGACGTTCAGGCGGTAGGCCAGGTCTTCGCGGAAGCGCCCGGCACGAGCCTCCTCGAGCAGGTCAGGCTTGGTCGCAGCAATGATGCGCAGGt > 1:112182/1‑149 (MQ=255) gcagcGGAATGTCCTCCCGCCGCTCGCGCAG‑CG‑GTGCCAGGCGCAATTCGGCGACGTTCAGGCGGTAGGCCAGGTCTTCGCGGAAGCGCCCGGCACGAGCCTCCTCGAGCAGGTCAGGCTTGGTCGCAGCAATGATGCGCAGGTCGACg < 3:30590/149‑1 (MQ=255) cctccCGCCGCTCGCGCAG‑CG‑GTGCCAGGCGCAATTCGGCGACGTTCAGGCGGTAGGCCAGGTCTTCGCGGAAGCGCCCGGCACGCGCCTCCTCGAGCACGTCAGGCTTGGTCGCAGCAATGCTGCGCAGGTCGACGCTGCTGCTCTgg > 5:106021/1‑149 (MQ=255) ccgccgCTCGCGCAG‑CG‑GTGCCAGGCGCAATTCGGCGACGTTCAGGCGGTAGGCCAGGTCTTCGCGGAAGCGCCCGGCACGAGCCTCCTCGAGCAGGTCAGGCTTGGTCGCAGCAATGATGCGCAGGTCGACGCTGATGCTCTGGttt < 2:112182/148‑1 (MQ=255) | GCATTGGCCAGTTCACGCACGTTGCCAGGCCAGTCATGTGACAGCAGCTGCGCCAGCTGTGCACCCGATAGCGGCGGGGCCGCGCGACCAAGCTTTTCACCGGCAGCACGGGCAAAGTGTTCGAACAGCAGCGGAATGTCCTCCCGCCGCTCGCGCAG‑CG‑GTGCCAGGCGCAATTCGGCGACGTTCAGGCGGTAGGCCAGGTCTTCGCGGAAGCGCCCGGCACGAGCCTCCTCGAGCAGGTCAGGCTTGGTCGCAGCAATGATGCGCAGGTCGACGCTGATGCTCTGGTTT > NC_002947/1595911‑1596201 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |