New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 1596059 =43 (0.870)6 (0.130) 6/246 NT 14.2% coding (952/1335 nt) dctD‑III C4‑dicarboxylate transport transcriptional regulator
?NC_002947 1596148 = 31 (0.650)coding (863/1335 nt) dctD‑III C4‑dicarboxylate transport transcriptional regulator

GCATTGGCCAGTTCACGCACGTTGCCAGGCCAGTCATGTGACAGCAGCTGCGCCAGCTGTGCACCCGATAGCGGCGGGGCCGCGCGACCAAGCTTTTCACCGGCAGCACGGGCAAAGTGTTCGAACAGCAGCGGAATGTCCTCCCGCCGCTCGCGCAGCGGTGCCAGGCGCAATTCGGCGACGTTCAGGCGGTAGGCCAGGTCTTCGCGGAAGCGCCCGGCACGAGCCTCCTCGAGCAGGTCAGGCTTGGTCGCAGCAATGATGCGCAGGTCGACGCTGATGCTCTGGTTT  >  NC_002947/1595911‑1596201
                                                                                                                                                    |                                                                                                                                                
cgtgttcctcgacgaaatcgagagcatgcccctggccgcaacaggccaagctgttgcgggtgatacaggagcagaagttggagcgcctgggggcaaaccagagcatcagcgtcgacctgcgcatcattgctgcgaccaagcctgacctg                                                                                                                                                  <  1:56407‑M1/1‑1 (MQ=255)
 cgtgttcctcgacgaaatcgagagcatgcccctggcccaacaggccaagctgttgcgggtgatacaggagcagaagttggagcgcctgggggcaaaccagagcatcagcgtcgacctgcgcatcattgctgcgaccaagcctgacctGc                                                                                                                                                 <  3:83685‑M1/2‑1 (MQ=255)
   ttGGCCAGTTCACGCACGTTGCCAGGCCAGTCATGTGACAGCAGCTGCGCCAGCTGTGCACCCGATAGCGGCGGGGCCGCGCGACCAAGCTTTTCACCGGCAGCACGGGCAAAGTGTTCGAACAGCAGCGGAATGTCCTCCCGCCGCTc                                                                                                                                               <  6:66730/149‑1 (MQ=255)
          cgacgaaatcgagagcatgcccctggcccaacaggccaagctgttgcgggtgatacaggagcagaagttggagcgcctgggggcaaaccagagcatcagcgtcgacctgcgcatcattgctgcgaccaagcctgacctGCt                                                                                                                                                <  8:32756‑M1/3‑1 (MQ=255)
          cgacgaaatcgagagcatgcccctggcccaacaggccaagctgttgcgggtgatacaggagcagaagttggagcgcctgggggcaaaccagagcatcagcgtcgacctgcgcatcattgctgcgaccaagcctgacctGCt                                                                                                                                                >  7:32756‑M1/139‑141 (MQ=255)
           ttCACGCACGTTGCCAGGCCAGTCATGTGACAGCAGCTGCGCCAGCTGTGCACCCGATAGCGGCGGGGCCGCGCGACCAAGCTTTTCACCGGCAGCACGGGCAAAGTGTTCGAACAGCAGCGGAATGTCCTCCCGCCGCTCGCGCAGCg                                                                                                                                      >  6:7208/1‑149 (MQ=255)
              acgcacgTTGCCAGGCCAGTCATGTGACAGCAGCTGCGCCAGCTGTGCACCCGATAGCGGCGGGGCCGCGCGACCAAGCTTTTCACCGGCAGCACGGGCAAAGTGTTCGAACAGCAGCGGAATGTCCTCCCGCCGCTCGCGCAGCGGt                                                                                                                                   <  5:42487/148‑1 (MQ=255)
              acgcacgTTGCCAGGCCAGTCATGTGACAGCAGCTGCGCCAGCTGTGCACCCGATAGCGGCGGGGCCGCGCGACCAAGCTTTTCACCGGCAGCACGGGCAAAGTGTTCGAACAGCAGCGGAATGTCCTCCCGCCGCTCGCGCAGCGGTg                                                                                                                                  >  7:179141/1‑149 (MQ=255)
                    ggtGCCAGGCCAGTCATGTGACAGCAGCTGCGCCAGCTGTGCACCCGATAGCGGCGGGGCCGCGCGACCAAGCTTTTCACCGGCAGCACGGGCAAAGTGTTCGAACAGCAGCGGAATGTCCTCCCGCCGCTCGCGCAGCGGTGCCAGgc                                                                                                                            <  3:295920/147‑1 (MQ=255)
                         caggccagTCATGTGACAGCAGCTGCGCCAGCTGTGCACCCGATAGCGGCGGGGCCGCGCGACCAAGCTTTTCACCGGCAGCACGGGCAAAGTGTTCGAACAGCAGCGGAATGTCCTCCCGCCGCTCGCGCAGCGGTGCCAGGCGCAAt                                                                                                                       >  2:156598/1‑149 (MQ=255)
                                 tCATGTGACAGCAGCTGCGCCAGCTGTGCACCCGATAGCGGCGGGGCCGCGCGACCAAGCTTTTCACCGGCAGCACGGGCAAAGTGTTCGAACAGCAGCGGAATGTCCTCCCGCCGCt                                                                                                                                                <  5:174601/118‑1 (MQ=255)
                                 tCATGTGACAGCAGCTGCGCCAGCTGTGCACCCGATAGCGGCGGGGCCGCGCGACCAAGCTTTTCACCGGCAGCACGGGCAAAGTGTTCGAACAGCAGCGGAATGTCCTCCCGCCGCt                                                                                                                                                >  6:174601/1‑118 (MQ=255)
                                 tCATGTGACAGCAGCTGCGCCAGCTGTGCACCCGATAGCGGCGGGGCCGCGCGACCAAGCTTTTCACCGGCAGCACGGGCAAAGTGTTCGAACAGCAGCGGAATGTCCTCCCGCCGCTCGCGCAGCGGTGCCAGGCGCAATTCgg                                                                                                                   <  3:173020/145‑1 (MQ=255)
                                 tCATGTGACAGCAGCTGCGCCAGCTGTGCACCCGATAGCGGCGGGGCCGCGCGACCAAGCTTTTCACCGGCAGCACGGGCAAAGTGTTCGAACAGCAGCGGAATGTCCTCCCGCCGCTCGCGCAGCGGTGCCAGGCGCAATTCgg                                                                                                                   >  4:173020/1‑145 (MQ=255)
                                 tCATGTGACAGCAGCTGCGCCAGCTGTGCACCCGATAGCGGCGGGGCCGCGCGACCAAGCTTTTCACCGGCAGCACGGGCAAAGTGTTCGAACAGCAGCGGAATGTCCTCCCGCCGCTCGCGCAGCGGTGCCAGGCGCAATTCGGCGAc                                                                                                               <  3:112952/149‑1 (MQ=255)
                                 tCATGTGACAGCAGCTGCGCCAGCTGTGCACCCGATAGCGGCGGGGCCGCGCGACCAAGCTTTTCACCGGCAGCACGGGCAAAGTGTTCGAACAGCAGCGGAATGTCCTCCCGCCGCTCGCGCAGCGGTGCCAGGCGCAATTCGGCGAc                                                                                                               <  7:188008/149‑1 (MQ=255)
                                  cATGTGACAGCAGCTGCGCCAGCTGTGCACCCGATAGCGGCGGGGCCGCGCGACCAAGCTTTTCACCGGCAGCACGGGCAAAGTGTTCGAACAGCAGCGGAATGTCCTCCCGCCGCTCGCGCAGCGGTGCCAGGCGCAATTCg                                                                                                                    <  5:90995/143‑1 (MQ=255)
                                  cATGTGACAGCAGCTGCGCCAGCTGTGCACCCGATAGCGGCGGGGCCGCGCGACCAAGCTTTTCACCGGCAGCACGGGCAAAGTGTTCGAACAGCAGCGGAATGTCCTCCCGCCGCTCGCGCAGCGGTGCCAGGCGCAATTCg                                                                                                                    >  6:90995/1‑143 (MQ=255)
                                     gtgACAGCAGCTGCGCCAGCTGTGCACCCGATAGCGGCGGGGCCGCGCGACCAAGCTTTTCACCGGCAGCACGGGCAAAGTGTTCGAACAGCAGCGGAATGTCCTCCCGCCGCTCGCGCAGAGGTGCCAGGCGCAATTCGGCGACGtt                                                                                                            >  6:259119/1‑148 (MQ=255)
                                                  cgcCAGCTGTGCACCCGATAGCGGCGGGGCCGCGTGACCAAGCTTTTCACCGGCAGCACGGGCAAAGTGTTCGAACAGCAGCGGAATGTCCTCCCGCCGCTCGCGCAGCGGTGCCAGGCGCAATTCGGCGACGTTCAGGCGGTAGGc                                                                                                <  5:271117/147‑1 (MQ=255)
                                                  cgcCAGCTGTGCACCCGATAGCGGCGGGGCCGCGCGACCAAGCTTTTCACCGGCAGCACGGGCAAAGTGTTCGAACAGCAGCGGAATGTCCTCCCGCCGCTCGCGCAGCGGTACCAGGCGCAATTCGGCGACGTTCAGGCGGTAGGCCa                                                                                              <  5:7208/149‑1 (MQ=255)
                                                   gcCAGCTGTTCACCCGATAGCGGCGGGGCCTCGCGAACAAGCTTTTCACCGGCAGCACGGGCAAAGTGTTCGAACAGCAGCGGAATGTCCTCCCGCCGCTCGCGCAGCGGTGCCAGTCGCAATTCGGCGACGTTCAGGCGGTAGTCCAg                                                                                             <  2:200663/149‑1 (MQ=255)
                                                   gcCAGCTGTGCACCCGATAGCGGCGGGGCCGCGCGACCAAGCTTTTCACCGGCAGCACGGGCAAAGTGTTCGAACAGCAGCGGACTGTCCTCCCGCCGCTCGCGCAGCGGTGCCAGGCGCAATTCGGCGACGTTCAGGCGGTAGGCCAg                                                                                             <  2:196041/149‑1 (MQ=255)
                                                   gcCAGCTGTGCACCCGATAGCGGCGGGGCCGCGCGACCAAGCTTTTCACCAACAGCACGGGCAAAGTGTTCGAACAGCAGCGGAATGTCCTCCCGCCGCTCGCGCAGCGGTGCCAGGCGCAATTCGGCGACGTTCAGGCGGTAGGCCAg                                                                                             >  1:78332/1‑149 (MQ=255)
                                                    ccAGCTGTGCACACGATAGCGGCGGGGCCGCGCGACCAAGCTTTTCACCGGCAGCACGGGCAAAGTGTTCGAACAGCAGCGGAATGTCCTCCCGCCGCTCGCGCAGCGGTGCCAGGCGCAATTCGGCGACGTTCAGGCGGTAGGCCAgg                                                                                            >  5:193814/1‑149 (MQ=255)
                                                     cAGCTGTGCACCCGATAGCGGCGGGGCCGCGCGACCAAGCTTTTCACCGGCAGCACGGGCAAAGTGTTCGAACAGCAGCGGAATGTCCTCCCGCCGCTCGCGCAGCGGTGCCAGGCGCAATTCGGCGACGTTCAgg                                                                                                        <  7:270336/136‑1 (MQ=255)
                                                     cAGCTGTGCACCCGATAGCGGCGGGGCCGCGCGACCAAGCTTTTCACCGGCAGCACGGGCAAAGTGTTCGAACAGCAGCGGAATGTCCTCCCGCCGCTCGCGCAGCGGTGCCAGGCGCAATTCGGCGACGTTCAgg                                                                                                        >  8:270336/1‑136 (MQ=255)
                                                           tgCACCCGATAGCGGCGGGGCCGCGCGACCAAGCTTTTCACCGGCAGCACGGGCAAAGTGTTCGAACAGCAGCGGAATGTCCTCCCGCCGCTCGCGCAGCGGTGCCAGGCGCAATTCGGCGACGTTCAGGCGGTAGGCCAGGTCTTc                                                                                       <  8:179141/147‑1 (MQ=255)
                                                              atacaggagcagaagttggagcgcctgggggcaaaccagagcatcagcgtcgacctgcgcatcattgctgcgaccaagcctgacctGCTCGAGGAGGCTCGTGCCAGGCGCAATTCGGCGACGTTCAGGCGGTAGGCCAGGTCTTcgcg                                                                                    <  6:247279‑M1/63‑1 (MQ=255)
                                                               cccGATAGCGGCGGGGCCGCGCGACCAAGCTTTTCACCGGCAGCACGGGCAAAGTGTTCGAACAGCAGCGGAATGTCCTCCCGCCGCTCGCGCAGCGGTGCCAGGCGCAATTCGGCGACGTTCAGGCGGTAGGCCAGGTCTTCGCGGaa                                                                                 <  3:110945/149‑1 (MQ=255)
                                                               cacGATAGCGGCGGGGCCGCGCGACCAAGCTTTTCACCGGCAGCACGGGCAAAGTGTTCGAACAGCAGCGGAATGTCCTCCCGCCGCTCGCGCAGCGGTGCCAGGCGCAATTCGGCGACGTTCAGGCGGTAGGCCAGGTCTTCGCGGaa                                                                                 <  6:193814/147‑1 (MQ=255)
                                                                ccGATAGCGGCGGGGCCGCGCGACCAAGCTTTTCACCGGCAGCACGGGCAAAGTGTTCGAACAGCAGCGGAATGTCCTCCCGCCGCTCGCGCAGCGGTGCCAGGCGCAATTCGGCGCCGTTCAGGCGGTAGGCCAGGTCTTcgcgag                                                                                  >  5:129010/1‑145 (MQ=255)
                                                                  gATAGCGGCGGGGCCGCGCGACCAAGCTTTTCACCGGCAGCACGGGCAAAGTGTTCGAACAGCAGCGGAATGTCCTCCCGCCGCTCGCGCAGCGGTGCCAGGCGCAATTCGGCGACGTTCAGGCGGTAGGCCAGGTCTTCGCGGAAgcg                                                                              >  4:26793/1‑149 (MQ=255)
                                                                         gaagttggagcgcctgggggcaaaccagagcatcagcgtcgacctgcgcatcattgctgcgaccaagcctgacctGCTCGCGCAGCGGTGCCAGGCGCAATTCGGCGACGTTCAGGCGGTAGGCCAGGTCTTCGCGGAAGCGCCCGGCa                                                                       <  5:71104‑M1/74‑1 (MQ=255)
                                                                          aagttggagcgcctgggggcaaaccagagcatcagcgtcgacctgcgcatcattgctgcgaccaagcctgacctGCTCGAGGAGGCTCGTGCCAGGCGCAATTCGGCGACGTTCAGGCGGTAGGCCAGGTCTTCGCGGAAGCGCCCGGc                                                                        >  5:247279‑M1/75‑149 (MQ=255)
                                                                                 gcgcgACCAAGCTTTTCACCGGCAGCACGGGCAAAGTGTTCGAACAGCAGCGGAATGTCCTCCCGCCGCTCGCGCAGCGGTGCCAGGCGCAATTCGGCGACGTTCAGGCGGTAGGCCAGGTCTTcgc                                                                                     <  3:201282/127‑1 (MQ=255)
                                                                                 gcgcgACCAAGCTTTTCACCGGCAGCACGGGCAAAGTGTTCGAACAGCAGCGGAATGTCCTCCCGCCGCTCGCGCAGCGGTGCCAGGCGCAATTCGGCGACGTTCAGGCGGTAGGCCAGGTCTTcgc                                                                                     >  4:201282/1‑127 (MQ=255)
                                                                                       ccAAGCTTTTCACCGGCAGCACGGGCAAATTGTTCGACCAGCAGCGGAATGTCCTCCCGCCGCTCGCGCATCGGTGCCAGGCGCAATTCGGCGACGTTCAGGCGTTAGGCCAGGTCTTCGCGGAAGCGCCCGGCACTAGCCTCCTCGAg                                                         <  4:189090/149‑1 (MQ=255)
                                                                                        cAAGCTTTTCACCGGCAGCACGGGCAAAGTGTTCGAACAGCAGCGGAATGTCCTCCCGCCGCTCGCGCAGCGGTGCCAGGCGCAATTCGGCGACGTTCAGGCGGTAGGCCAGGTCTTCGCGGAAGCGCCCGGCACGAGCCTCCTCGAg                                                         >  6:241775/1‑148 (MQ=255)
                                                                                         ggggcaaaccagagcatcagcgtcgacctgcgcatcattgctgcgaccaagcctgacctGCTCGCGCAGCGGTGCCAGGCGCAATTCGGCGACGTTCAGGCGGTAGGCCAGGTCTTCGCGGAAGCGCCCGGCACGAGCCTCCTCGAGCa                                                       >  6:71104‑M1/60‑149 (MQ=255)
                                                                                             ttttCACCGGCAGCACGGGCAAAGTGTTCGAACAGCAGCGGAATGTCCTCCCGCCGCTCGCGCAGCGGTGCCAGGCGCAATTCGGCGACGTTCAGCCGGTAGGCCAGGTCTTCGCGGAAGCGCCCGGCACGAGCCTCCTCGAGCAGGt                                                    >  1:54274/1‑148 (MQ=255)
                                                                                             gtttCCCCGGCAGCACGGGCATAGTGTTCGAACAGCAGCGTAATGTCCTCCCGCCGCTCGCGCAGCGGTGCCAGGCGCAATTCGGCGACGTTCAGGCGGTAGGCCAGGTCTTCGCGGAAGCGCCCGGCACGAGCCTCCTCGAGCAGGTc                                                   <  8:111452/148‑1 (MQ=255)
                                                                                              aaaccagagcatcagcgtcgacctgcgcatcattgctgcgaccaagcctgacctGCTCGCGCAGCGGTGCCAGGCGCAATTCGGCGACGTTCAGGCGGTAGGCCAGGTCTTCGCGGAAGCGCCCGGCACGAGCCTCCTCGAGCAGGt                                                    <  2:206068‑M1/93‑1 (MQ=255)
                                                                                              aaaccagagcatcagcgtcgacctgcgcatcattgctgcgaccaagcctgacctGCTCGCGCAGCGGTGCCAGGCGCAATTCGGCGACGTTCAGGCGGTAGGCCAGGTCTTCGCGGAAGCGCCCGGCACGAGCCTCCTCGAGCAGGTCa                                                  >  1:206068‑M1/55‑149 (MQ=255)
                                                                                                      gcagcaCGGGCAAAGTGTTCGAACAGCAGCGGAATGTCCTCCCGCCGCTCGCGCAGCGGTGCCAGGCGCAATTCGGCGACGTTCCGGCGGTAGGCCAGGTCTTCGCGGAAGCGCCCGGCACGAGCCTCCTCGAGCAGGTCAGGCTTGGt                                          <  5:259119/149‑1 (MQ=255)
                                                                                                                  aaGTGTTCGAACAGCAGCGGAATGTCCTCCCGCCGCTCGCGCAGCGGTGCCAGGCGCAATTCGGCGACGTTCAGGCGGTAGGCCAGGTCTTCGCGGAAGCGCCCGGCACGAGCCTCCTCGAGCAGGTCAGGCTTGGTCGCAGCAatgat                              <  2:78332/149‑1 (MQ=255)
                                                                                                                   aGTGTTCGAACAGCAGCGGAATGTCCTCCCGCCGCTCGCGCAGCGGTGCCAGGCGCAATTCGGCGACGTTCAGGCGGTAGGCCAGGTCTTCGCGGAAGCGCCCGGCACGAGCCTCCTCGAGCAgg                                                     >  4:107291/1‑125 (MQ=255)
                                                                                                                   aGTGTTCGAACAGCAGCGGAATGTCCTCCCGCCGCTCGCGCAGCGGTGCCAGGCGCAATTCGGCGACGTTCAGGCGGTAGGCCAGGTCTTCGCGGAAGCGCCCGGCACGAGCCTCCTCGAGCAgg                                                     <  3:107291/125‑1 (MQ=255)
                                                                                                                       ttCGAACAGCAGCGGAATGTCCTCCCGCCGCTCGCGCAGCGGTGCCAGGCGCAATTCGGCGACGTTCAGGCGGTAGGCCAGGTCTTCGCGGAAGCGCCCgg                                                                         <  5:116915/101‑1 (MQ=255)
                                                                                                                       ttCGAACAGCAGCGGAATGTCCTCCCGCCGCTCGCGCAGCGGTGCCAGGCGCAATTCGGCGACGTTCAGGCGGTAGGCCAGGTCTTCGCGGAAGCGCCCgg                                                                         >  6:116915/1‑101 (MQ=255)
                                                                                                                         cGAACAGCAGCGGAATGTCCTCCCGCCGCTCGCGCAGCGGTGCCAGGCGCAATTCGGCGACGTTCAGGCGGTAGGCCAGGTCTTCGCGGAAGCGCCCGGCACGAGCCTCCTCGAGCAGGTCAGGCTTGGTCGCAGCAATGATGCGCAgg                       >  1:186215/1‑149 (MQ=255)
                                                                                                                          gAATAGCAGCGGAATGTCCTCCCGCCGCTCGCGCAGCGGTGCCAGGCGCAATTCGGCGACGTTCAGGCGGTAGGCCAGGTCTTCGCGGAAGCGCCCGGCACGAGCCTCCTCGAGCAGGTCAGGCTTGGTc                                         >  7:295290/1‑130 (MQ=255)
                                                                                                                          gAATAGCAGCGGAATGTCCTCCCGCCGCTCGCGCAGCGGTGCCAGGCGCAATTCGGCGACGTTCAGGCGGTAGGCCAGGTCTTCGCGGAAGCGCCCGGCACGAGCCTCCTCGAGCAGGTCAGGCTTGGTc                                         <  8:295290/130‑1 (MQ=255)
                                                                                                                          gAACAGCAGCGGAATGTCCTCCCGCCGCTCGCGCAGCGGTGCCAGGCGCAATTCGGCGACGTTCAGGCGGTAGGCCAGGTCTTCGCGGAAGCGCCCGGCACGAGCCTCCTCGAGCAGGTCAGGCTTGGTCGCAGCAATGATGCGCAGGt                      >  1:112182/1‑149 (MQ=255)
                                                                                                                               gcagcGGAATGTCCTCCCGCCGCTCGCGCAGCGGTGCCAGGCGCAATTCGGCGACGTTCAGGCGGTAGGCCAGGTCTTCGCGGAAGCGCCCGGCACGAGCCTCCTCGAGCAGGTCAGGCTTGGTCGCAGCAATGATGCGCAGGTCGACg                 <  3:30590/149‑1 (MQ=255)
                                                                                                                                           cctccCGCCGCTCGCGCAGCGGTGCCAGGCGCAATTCGGCGACGTTCAGGCGGTAGGCCAGGTCTTCGCGGAAGCGCCCGGCACGCGCCTCCTCGAGCACGTCAGGCTTGGTCGCAGCAATGCTGCGCAGGTCGACGCTGCTGCTCTgg     >  5:106021/1‑149 (MQ=255)
                                                                                                                                               ccgccgCTCGCGCAGCGGTGCCAGGCGCAATTCGGCGACGTTCAGGCGGTAGGCCAGGTCTTCGCGGAAGCGCCCGGCACGAGCCTCCTCGAGCAGGTCAGGCTTGGTCGCAGCAATGATGCGCAGGTCGACGCTGATGCTCTGGttt  <  2:112182/148‑1 (MQ=255)
                                                                                                                                                    |                                                                                                                                                
GCATTGGCCAGTTCACGCACGTTGCCAGGCCAGTCATGTGACAGCAGCTGCGCCAGCTGTGCACCCGATAGCGGCGGGGCCGCGCGACCAAGCTTTTCACCGGCAGCACGGGCAAAGTGTTCGAACAGCAGCGGAATGTCCTCCCGCCGCTCGCGCAGCGGTGCCAGGCGCAATTCGGCGACGTTCAGGCGGTAGGCCAGGTCTTCGCGGAAGCGCCCGGCACGAGCCTCCTCGAGCAGGTCAGGCTTGGTCGCAGCAATGATGCGCAGGTCGACGCTGATGCTCTGGTTT  >  NC_002947/1595911‑1596201

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.