New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1596059 =	43 (0.870)	6 (0.130)	6/246	NT	14.2%	coding (952/1335 nt)	dctD‑III	C4‑dicarboxylate transport transcriptional regulator
	?	NC_002947	1596148 =	31 (0.650)					coding (863/1335 nt)	dctD‑III	C4‑dicarboxylate transport transcriptional regulator

AAGCTTTTCACCGGCAGCACGGGCAAAGTGTTCGAACAGCAGCGGAATGTCCTCCCGCCGCTCGCGCAGCGGTGCCAGGCGCAATTCGGCGACGTTCAGGCGGTAGGCCAGGTCTTCGCGGAAGCGCCCGGCACGAGCCTCCTCGAGCAGGTCAGGCTTGGTCGCAGCAATGATGCGCAGGTCGACGCTGATGCTCTGGTTTGCCCCCAGGCGCTCCAACTTCTGCTCCTGTATCACCCGCAACAGCTTGGCCTGTTG‑GGCCAGGGGCATGCTCTCGATTTCGTCGAGGAACACG  >  NC_002947/1596000‑1596294                                                                                                                                                     |                                                                                                                                                    ggggcaaaccagagcatcagcgtcgacctgcgcatcattgctgcgaccaagcctgacctGCTCGCGCAGCGGTGCCAGGCGCAATTCGGCGACGTTCAGGCGGTAGGCCAGGTCTTCGCGGAAGCGCCCGGCACGAGCCTCCTCGAGCa                                                                                                                                                     >  6:71104‑M1/60‑149 (MQ=255)     ttttCACCGGCAGCACGGGCAAAGTGTTCGAACAGCAGCGGAATGTCCTCCCGCCGCTCGCGCAGCGGTGCCAGGCGCAATTCGGCGACGTTCAGCCGGTAGGCCAGGTCTTCGCGGAAGCGCCCGGCACGAGCCTCCTCGAGCAGGt                                                                                                                                                  >  1:54274/1‑148 (MQ=255)     gtttCCCCGGCAGCACGGGCATAGTGTTCGAACAGCAGCGTAATGTCCTCCCGCCGCTCGCGCAGCGGTGCCAGGCGCAATTCGGCGACGTTCAGGCGGTAGGCCAGGTCTTCGCGGAAGCGCCCGGCACGAGCCTCCTCGAGCAGGTc                                                                                                                                                 <  8:111452/148‑1 (MQ=255)      aaaccagagcatcagcgtcgacctgcgcatcattgctgcgaccaagcctgacctGCTCGCGCAGCGGTGCCAGGCGCAATTCGGCGACGTTCAGGCGGTAGGCCAGGTCTTCGCGGAAGCGCCCGGCACGAGCCTCCTCGAGCAGGt                                                                                                                                                  <  2:206068‑M1/93‑1 (MQ=255)      aaaccagagcatcagcgtcgacctgcgcatcattgctgcgaccaagcctgacctGCTCGCGCAGCGGTGCCAGGCGCAATTCGGCGACGTTCAGGCGGTAGGCCAGGTCTTCGCGGAAGCGCCCGGCACGAGCCTCCTCGAGCAGGTCa                                                                                                                                                >  1:206068‑M1/55‑149 (MQ=255)              gcagcaCGGGCAAAGTGTTCGAACAGCAGCGGAATGTCCTCCCGCCGCTCGCGCAGCGGTGCCAGGCGCAATTCGGCGACGTTCCGGCGGTAGGCCAGGTCTTCGCGGAAGCGCCCGGCACGAGCCTCCTCGAGCAGGTCAGGCTTGGt                                                                                                                                        <  5:259119/149‑1 (MQ=255)                          aaGTGTTCGAACAGCAGCGGAATGTCCTCCCGCCGCTCGCGCAGCGGTGCCAGGCGCAATTCGGCGACGTTCAGGCGGTAGGCCAGGTCTTCGCGGAAGCGCCCGGCACGAGCCTCCTCGAGCAGGTCAGGCTTGGTCGCAGCAatgat                                                                                                                            <  2:78332/149‑1 (MQ=255)                           aGTGTTCGAACAGCAGCGGAATGTCCTCCCGCCGCTCGCGCAGCGGTGCCAGGCGCAATTCGGCGACGTTCAGGCGGTAGGCCAGGTCTTCGCGGAAGCGCCCGGCACGAGCCTCCTCGAGCAgg                                                                                                                                                   >  4:107291/1‑125 (MQ=255)                           aGTGTTCGAACAGCAGCGGAATGTCCTCCCGCCGCTCGCGCAGCGGTGCCAGGCGCAATTCGGCGACGTTCAGGCGGTAGGCCAGGTCTTCGCGGAAGCGCCCGGCACGAGCCTCCTCGAGCAgg                                                                                                                                                   <  3:107291/125‑1 (MQ=255)                                 cGAACAGCAGCGGAATGTCCTCCCGCCGCTCGCGCAGCGGTGCCAGGCGCAATTCGGCGACGTTCAGGCGGTAGGCCAGGTCTTCGCGGAAGCGCCCGGCACGAGCCTCCTCGAGCAGGTCAGGCTTGGTCGCAGCAATGATGCGCAgg                                                                                                                     >  1:186215/1‑149 (MQ=255)                                  gAATAGCAGCGGAATGTCCTCCCGCCGCTCGCGCAGCGGTGCCAGGCGCAATTCGGCGACGTTCAGGCGGTAGGCCAGGTCTTCGCGGAAGCGCCCGGCACGAGCCTCCTCGAGCAGGTCAGGCTTGGTc                                                                                                                                       >  7:295290/1‑130 (MQ=255)                                  gAATAGCAGCGGAATGTCCTCCCGCCGCTCGCGCAGCGGTGCCAGGCGCAATTCGGCGACGTTCAGGCGGTAGGCCAGGTCTTCGCGGAAGCGCCCGGCACGAGCCTCCTCGAGCAGGTCAGGCTTGGTc                                                                                                                                       <  8:295290/130‑1 (MQ=255)                                  gAACAGCAGCGGAATGTCCTCCCGCCGCTCGCGCAGCGGTGCCAGGCGCAATTCGGCGACGTTCAGGCGGTAGGCCAGGTCTTCGCGGAAGCGCCCGGCACGAGCCTCCTCGAGCAGGTCAGGCTTGGTCGCAGCAATGATGCGCAGGt                                                                                                                    >  1:112182/1‑149 (MQ=255)                                       gcagcGGAATGTCCTCCCGCCGCTCGCGCAGCGGTGCCAGGCGCAATTCGGCGACGTTCAGGCGGTAGGCCAGGTCTTCGCGGAAGCGCCCGGCACGAGCCTCCTCGAGCAGGTCAGGCTTGGTCGCAGCAATGATGCGCAGGTCGACg                                                                                                               <  3:30590/149‑1 (MQ=255)                                                   cctccCGCCGCTCGCGCAGCGGTGCCAGGCGCAATTCGGCGACGTTCAGGCGGTAGGCCAGGTCTTCGCGGAAGCGCCCGGCACGCGCCTCCTCGAGCACGTCAGGCTTGGTCGCAGCAATGCTGCGCAGGTCGACGCTGCTGCTCTgg                                                                                                   >  5:106021/1‑149 (MQ=255)                                                      tgacctgctcgaggaggctcgtgccgggcgcttccgcgaagacctggcctaccgcctgaacgtcgccgaattgcgcctggcaccgctgcgcgagcAGGTCAGGCTTGGTCGCAGCAATGATGCGCAGGTCGACGCTGATGCTCTGGttt                                                                                                >  1:206068‑M2/96‑149 (MQ=255)                                                       ccgccgCTCGCGCAGCGGTGCCAGGCGCAATTCGGCGACGTTCAGGCGGTAGGCCAGGTCTTCGCGGAAGCGCCCGGCACGAGCCTCCTCGAGCAGGTCAGGCTTGGTCGCAGCAATGATGCGCAGGTCGACGCTGATGCTCTGGttt                                                                                                <  2:112182/148‑1 (MQ=255)                                                        acctgctcgaggaggctcgtgccgggcgcttccgcgaagacctggcctaccgcctgaacgtcgccgaattgcgcctggcaccgctgcgcgagcAGGTCAGGCTTGGTCGCAGCAATGATGCGCAGGTCGACGCTGATGCTCTGGttt                                                                                                <  2:206068‑M2/54‑1 (MQ=255)                                                           tgctcgaggaggctcgtgccgggcgcttccgcgaagacctggcctaccgcctgaacgtcgccgaattgcgcctggcaccgctgcgcgagcAGGTCAGGCTTGGTCGCAGCAATGATGCGCAGGTCGACGCTGATGCTCTGGTTTGcccc                                                                                           >  6:71104‑M2/91‑149 (MQ=255)                                                              TCGCGCAGCGGTGCCAGGCGCAATTCGGCGACGTTCAGGCGGTAGGCCAGGTCTTCGCGGAAGCGCCCGGCACGAGCCTCCTCGAGCAGGTCAGGCTTGGTCGCAGCAATGATGCGCAGGTCGACGCTGATGCTCTGGTTTGCCCCCAg                                                                                        <  8:216360‑M1/149‑1 (MQ=255)                                                                     gCGGTGCCAGGCGCAATTCGGCGACGTTCAGGCGGTAGGCCAGGTCTTCGCGGAAGCGCCCGGCACGAGCCTCCTCGAGCAGGTCAGGCTTGGTCGCAGCAATGATGCGCAGGTCGACGCTGATGCTCTGGATTGCCCCCAGGCGCTcc                                                                                 <  2:186215/149‑1 (MQ=255)                                                                          gccgggcgcttccgcgaagacctggcctaccgcctgaacgtcgccgaattgcgcctggcacgagcctcctcgagcAGGTCAGGCTTGGTCGCAGCAATGATGCGCAGGTCGACGCTGATGCTCTGGTTTGCCCCCAGGCGCTCCAACtt                                                                            >  5:247279‑M2/76‑149 (MQ=255)                                                                           tgccgggcgcttccgcgaagacctggcctaccgcctgaacgtcgccgaattgcgcctggcaccgctgcgcgagcAGGTCAGGCTTGGTCGCAGCAATGATGCGCAGGTCGACGCTGATGCTCTGGTTTGCCCCCAGGCGCTCCAACTTc                                                                           <  5:71104‑M2/75‑1 (MQ=255)                                                                           ccAGGCGCAATTCGGCGACGTTCAGGCGGTAGGCCAGGTCTTCGCGGAAGCGCCCGGCACGAGCCTCCTCGAGCAGGTCAGGCTTGGTCGCAGCAATGATGCGCAGGTCGACGCTGATGCTCTGGTTTGCCCCCAGGCGCTCCAACtt                                                                            <  3:26793/148‑1 (MQ=255)                                                                           ccAGGCGCAATTCGGCGACGTTCAGGCGGTAGGCCAGGTCTTCGCGGAAGCGCCCGGCACGAGCCTCCTCGAGCAGGTCAGGCTTGGTCGCAGCAATGATGCGCAGGTCGACGCTGATGCTCTGGTTTGCCCCCAGGCGCTCCAACTTc                                                                           <  5:241775/149‑1 (MQ=255)                                                                            cAGGCGCAATTCGGCGACGTTCAGGCGGTAGGCCAGGTCTTCGCGGAAGCGCCCGGCACGAGCCTCCTCGAGCAGGTCAGGCTTGGTCGCAGCAATGATGCGCAGGTCGACGCTGATGCTCTGGTTTGc                                                                                              <  1:238123/129‑1 (MQ=255)                                                                            cAGGCGCAATTCGGCGACGTTCAGGCGGTAGCCCAGGTCTTCGCGGAAGCGCCCGGCACGAGCCTCCTCGAGCAGGTCAGGCTTGGTCGCAGCAATGATGCGCAGGTCGACGCTGATGCTCTGGTTTGc                                                                                              >  2:238123/1‑129 (MQ=255)                                                                             aGGCGCAATTCGGCGACGTTCAGGCGGTAGGCCAGGTCTTCGCGGAAGCGCCCGGCACGAGCCTCCTCGAGCAGGTCA‑GCTTGGTCGCAGCAATGATGCGCAGGTCGACGCTGATGCTCTGGTTTGCCCCCAGGCGCTCCAACTTCTGc                                                                        >  6:29802/1‑149 (MQ=255)                                                                                     ttCGGCGACGTTCAGGCGGTAGGCCAGGTCTTCGCGGAAGCGCCCGGCACGAGCCTCCTCGAGCAGGTCAGGCTTGGTCGCAGCAATGATGCGCAGGTCGACGCTGATGCTCTGGTTTGCCCCCAg                                                                                        >  3:45105/1‑126 (MQ=255)                                                                                     ttCGGCGACGTTCAGGCGGTAGGCCAGGTCTTCGCGGAAGCGCCCGGCACGAGCCTCCTCGAGCAGGTCAGGCTTGGTCGCAGCAATGATGCGCAGGTCGACGCTGATGCTCTGGTTTGCCCCCAg                                                                                        <  4:45105/126‑1 (MQ=255)                                                                                      cgcgaagacctggcctaccgcctgaacgtcgccgaattgcgcctggcacgagcctcctcgagcAGGTCAGGCTTGGTCGCAGCAATGATGCGCAGGTCGACGCTGATGCTCTGGTTTGCCCCCAGGCGCTCCAACTTCTGCTCCTGTAt                                                                <  6:247279‑M2/86‑1 (MQ=255)                                                                                                     cGGTAGGCCAGGTCTTCGCGGAAGCGCCCGGCACGAGCCTCCTCGAGCAGGTCA‑GCTTGGTCGCAGCAATGATGCGCAGGTCGACGCTGATGCTCTGGTTTGCCCCCAGGCGCTCCAACTTCTGCTCCTGTATCACCCGCAACAGCTTg                                                <  5:29802/149‑1 (MQ=255)                                                                                                      ggTAGGCCAGGTCTTCGCGGAAGCGCCCGGCACGAGCCTCCTCGAGCAGGTCAGGCTTGGTCGCAGCAATGATGCGCAGGTCGACGCTGATGCTCTGGTTTGCCCCCAGGCGCTCCAACTTCTGCTCCTGTATCACCCGCAACAGCTTg                                                >  1:213022/1‑149 (MQ=255)                                                                                                            ccAGGTCTTCGCGGAAGCGCCCGGCACGAGCCTCCTCGAGCAGGTCAGGCTTGGTCGCAGCAATGATGCGCAGGTCGACGCTGATGCTCTGGTTTGCCCCCAGGCGCTCCAACTTCTGCTCCTGTATCAc                                                             <  1:218896/130‑1 (MQ=255)                                                                                                            ccAGGTCTTCGCGGAAGCGCCCGGCACGAGCCTCCTCGAGCAGGTCAGGCTTGGTCGCAGCAATGATGCGCAGGTCGACGCTGATGCTCTGGTTTGCCCCCAGGCGCTCCAACTTCTGCTCCTGTATCAc                                                             >  2:218896/1‑130 (MQ=255)                                                                                                                   ttCGCGGAAGCGCCCGGCACGAGCCTCCTCGAGCAGGTCAGGCTTGGTCGCAGCAATGATGCGCAGGTCGACGCTGATGCTCTGGTTTGCCCCCAGGCGCTcc                                                                                 <  5:284949/103‑1 (MQ=255)                                                                                                                   ttCGCGGAAGCGCCCGGCACGAGCCTCCTCGAGCAGGTCAGGCTTGGTCGCAGCAATGATGCGCAGGTCGACGCTGATGCTCTGGTTTGCCCCCAGGCGCTcc                                                                                 >  6:284949/1‑103 (MQ=255)                                                                                                                   ttCGCGGAAGCGCCCGGCACGAGCCTCCTCGAGCAGGTCAGGCTTGGTCGCAGCAATGATGCGCAGGTCGACGCTGATGCTCTGGTTTGCCCCCAGGCGCTCCAACtt                                                                            <  2:226059/108‑1 (MQ=255)                                                                                                                   ttCGCGGAAGCGCCCGGCACGAGCCTCCTCGAGCAGGTCAGGCTTGGTCGCAGCAATGATGCGCAGGTCGACGCTGATGCTCTGGTTTGCCCCCAGGCGCTCCAACtt                                                                            >  1:226059/1‑108 (MQ=255)                                                                                                                      gcgGAAGCGCCCGGCACGAGCCTCCTCGAGCAGGTCAGGCTTGGTCGCAGCAATGATGCGCAGGTCGACGCTGATGCTCTTGTTTGCCCCCAGGCGCTCCAACTTCTGCTCCt                                                                    <  6:240561/113‑1 (MQ=255)                                                                                                                      gcgGAAGCGCCCGGCACGAGCCTCCTCGAGCAGGTCAGGCTTGGTCGCAGCAATGATGCGCAGGTCGACGCTGATGCTCTGGTTTGCCCCCAGGCGCTCCAACTTCTGCTCCt                                                                    >  5:240561/1‑113 (MQ=255)                                                                                                                        ggAAGCGCCCGGCACGAGCCTCCTCGAGCAGGTCAGGCTTGGTCGCAGCAATGATGCGCAGGTCGACGCGGATGCTCTGGTTTGCCCCCAGGCGCTCCAACTTCTGCTCCTGTATCACCCGCAACAGCTTGGCCTGTTG‑GGCCAGGGGc                             <  2:213022/149‑1 (MQ=255)                                                                                                                               cccGGCACGAGCCTCCTCGAGCAGGTCAGGCTTGGTCGCAGCAATGATGCGCAGGTCGACGCTGATGCTCTGGTTTGCCCCCAGGCGCTCCAACTTCTGCTCCTGTATCACCCGCAACAGCTTGGCCTGTTG‑GGCCAGGGGCATGctct                      >  3:176450/1‑149 (MQ=255)                                                                                                                                         gCCTCCTCGAGCAGGTCAGGCTTGGTCGCAGCAATGATGCGCAGGTCGACGCTGATGATCTGGTTTGCCCCCAGGCGCTCCAACTTCTGCTCCTGTATCACCCGCAACAGCTTGGCCTGTTG‑GGCCAGGGGCATGCTCTCGATTtcgtc            >  2:56407/1‑149 (MQ=255)                                                                                                                                          cctcctCGAGCAGGTCAGGCTTGGTCGCAGCAATGATGCGCAGGTCGACGCTGATGCACTGGTTTGCCCCCAGGCGCTCCAACTTCTGCTCCTGTATCACCCGCAACAGCTTGGCCTGTTG‑GGCCAGGGGCATGCTCTCGATTtcgtc            >  5:1242/1‑148 (MQ=255)                                                                                                                                           ctcctcGAGCAGGTCAGGCTTGGTCGCAGCAATGATGGGCAGGTCGACGCTGATGCTCTGGTTTGCCCCCAGGCGCTCCAACTTCTGCTGCTGTATCACCCGCAACAGCTTGGCCTGTTG‑GGCCAGGGGCATGCTCTCGATTTGGTCGa          <  2:54274/149‑1 (MQ=255)                                                                                                                                             cctcGAGCAGGTCAGGCTTGGTCGCAGCAATGATGCGCAGGTCGACGCTGATGCTCTGGTTTGCCCCCAGGCGCTCCAACTTCTGCTCCTGTATCACCCGCAACAGCTTGGCCTGTTG‑GGCCAGGGGCATGCTCTCGATTTCGTCGAg         >  3:20472/1‑148 (MQ=255)                                                                                                                                              ctcGAGCAGGTCACGCTGGCTCGCAGCACTGCCGCGCCGGTCGACGCTGCTGCGCTGGTTGGCCCCCAGCCGCTCCACCTGCTGCTCCTGTATCACCCGCAACAGCTTGGCCTGCTG‑GGCCAGGGGCATGCTCTCGATTTCGTCGAg         <  8:280726/147‑1 (MQ=255)                                                                                                                                                  agcAGGTCAGGCTTGGTCGCAGCAATGATGCGCAGGTCGACGCTGATGCTCTGGTTTGCCCCCAGGCGCTCCAACTTCTGCTCCTGTATCACCCGCAACAGCTTGGCCTGTTG‑GGCCAGGGGCATGCTCTCGATTtcgtcg           <  8:32756‑M2/138‑1 (MQ=255)                                                                                                                                                  agcAGGTCAGGCTTGGTCGCAGCAATGATGCGCAGGTCGACGCTGATGCTCTGGTTTGCCCCCAGGCGCTCCAACTTCTGCTCCTGTATCACCCGCAACAGCTTGGCCTGTTG‑GGCCAGGGGCATGCTCTCGATTtcgtcg           >  7:32756‑M2/4‑141 (MQ=255)                                                                                                                                                   gcAGGTCAGGCTTGGTCGCAGCAATGATGCGCAGGTCGACGCTGATGCTCTGGTTTGCCCCCAGGCGCTCCAACTTCTGCTCCTGTATCACCCGCAACAGCTTGGCCTGTTG‑GGCCAGGGGCATGCTCTCGATTTCGTCGAGGAACACg  <  3:83685‑M2/147‑1 (MQ=255)                                                                                                                                                    cAGGTCAGGCTTGGTCGCAGCAATGATGCGCAGGTCGACGCTGATGCTCTGGTTTGCCCCCAGGCGCTCCAACTTCTGCTCCTGTATCACCCGCAACAGCTTGGCCTGTTGCGGCCAGGGGCATGCTCTCGATTTCGTCGAGGAACACg  <  1:56407‑M2/148‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                    AAGCTTTTCACCGGCAGCACGGGCAAAGTGTTCGAACAGCAGCGGAATGTCCTCCCGCCGCTCGCGCAGCGGTGCCAGGCGCAATTCGGCGACGTTCAGGCGGTAGGCCAGGTCTTCGCGGAAGCGCCCGGCACGAGCCTCCTCGAGCAGGTCAGGCTTGGTCGCAGCAATGATGCGCAGGTCGACGCTGATGCTCTGGTTTGCCCCCAGGCGCTCCAACTTCTGCTCCTGTATCACCCGCAACAGCTTGGCCTGTTG‑GGCCAGGGGCATGCTCTCGATTTCGTCGAGGAACACG  >  NC_002947/1596000‑1596294

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.