New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2361924 =	41 (0.830)	5 (0.110)	5/238	NT	13.3%	coding (1953/2724 nt)	PP_2076	hypothetical protein
	?	NC_002947	= 3838237	27 (0.590)					coding (1832/2673 nt)	PP_3388	hypothetical protein

CGTAGTCATCGCGGCCGCCAGGAGTTCGGTCTTCACCCGCGCATCACTGTCAGGCAGTTCGCGCGCTTTGAAGGCCATCAGCATCCCCTCCAGCAGGCACACTAGCCCGGAAACACGCACTTTGTAGAAGTCACTGTTCCGGGCCTGCATCAACCCTTCAGCCCAAGCCTGGTCGAGGTACCTTGATACCTGGCCTGCGCTGCGTTGTGGGTTGATGGGCTGCCCGCTACGTGCAGCTTCACTCAGGCGAATATCGACAGCCGTTTCATGCACCGAAGCGAACAAGGTCAGCC  >  NC_002947/2361777‑2362069                                                                                                                                                    |                                                                                                                                                  cGTAGTCATCGCGGCCGCCAGGAGTTCGGTCTTCACCCGCGCATCACTGTCAGGCAGTTCGCGCGCTTTGAAGGCCATCAGCATCCCCTCCAGCAGGCACACTAGCCCGGAAACACGCACTTTGTAGAAGTTACTGTTCCGGGCCTGCa                                                                                                                                                  >  2:202013/1‑149 (MQ=255)   tAGTCATCGCGGCCGCCAGGAGTTCGGTCTTCACCCGCGCATCACTGTCAGGCAGTTCGCGCGCTTTGAAGGCCATCAGCATCCCCTCCAGCAGGCACACTAGCCCGGAAACACGCACTTTGTAGAAGTCACTGTTCCGGGCCTGCAt                                                                                                                                                 >  4:41467/1‑148 (MQ=39)     ctggggcggcaagtgctgcgcaccgccacccccaacagcatggaccgcgcgctgcaccagggtttgcggctgactttgttcgcttcggtgcatgaaacggctgtcgatattcgcctgagtgaagctgcacgtagcgggcagccCATCaa                                                                                                                                              >  3:257909‑M1/144‑149 (MQ=255)        aTCGCGGCCGCCAGGAGTTCGGTCTTCACCCGCGCATCACTGTCAGGCAGTTCGCGCGCTTTGAAGGCCATCAGCATCCCCTCCAGCAGGCACACTAGCCCGGAAACACGCACTTTGTAGAAGTCACTGTTCCGGGCCTGCATCAAccc                                                                                                                                           >  8:122882/1‑149 (MQ=39)         tCGCGGCCGCCAGGAGTTCGGTCTTCACCCGCGCATCACTGTCAGGCAGTTCGCGCGCTTTGAAGGCCATCAGCATCCCCTCCAGCAGGCACACTAGCCCGGAAACACGCACTTTGTAGAAGTCACTGTTCCGGGCCTGCATCAACCCt                                                                                                                                          >  4:189235/1‑149 (MQ=39)           gcgGCCGCCAGGAGTTCGGTCTTCACCCGCGCATCACTGTCAGGCAGTTCGCGCGCTTTGAAGGCCATCAGCATCCCCTCCAGCAGGCACACTAGCCCGGAAACACGCACTTTGTAGAAGTCACTGTTCCGGGCCTGCATCAACCCtt                                                                                                                                         <  1:812/148‑1 (MQ=39)                 gccAGGAGTTCGGTCTTCACCCGCGCATCACTGTCAGGCAGTTCGCGCGCTTTGAAGGCCATCAGCATCCCCTCCAGCAGGCACACTAGCCCGGAAACACGCACTTTGTAGAAGTCACTGTTCCGGGCCTGCATCAACCCTTCAGccc                                                                                                                                   >  8:72968/1‑148 (MQ=39)                   cAGGAGTTCGGTCTTCACCCGCGCATCACTGTCAGGCAGTTCGCGCGCTTTGAAGGCCATCAGCATCCCCTCCAGCAGGCACACTAGCCCGGAAACACGCACTTTGTAGAAGTCACTGTTCCGGGCCTGCATCAACCCTTCAGCCCAAg                                                                                                                                >  5:296447/1‑149 (MQ=39)                     tgcgcaccgccacccccaacagcatggaccgcgcgctgcaccagggtttgcggctgactttgttcgcttcggtgcatgaaacggctgtcgatattcgcctgagtgaagctgcacgtagcgggcagccCATCAACCCTTCAGCCCAAGcc                                                                                                                              <  4:299605‑M1/22‑1 (MQ=255)                        gTTCGGTCTTCACCCGCGCATCACTGTCAGGCAGTTCGCGCGCTTTGAAGGCCATCAGCATCCCCTCCAGCAGGCACACTAGCCCGGAAACACGCACTTTGTAGAAGTCACTGTTCCGGGCCTGCATCAACCCTTAAGCCCAAGCCTgg                                                                                                                           >  4:235985/1‑149 (MQ=37)                         ttCGGTCTTCACCCGCGCATCACGGGCAGGCCGGTCGCGCGGTGTGAAGGCCCTCCGCGTCCCCTCCAGCAGGCACACTCGCCCGGAAACAGGCCCTTTGGAGCACTCCCTGTTCCGGGCGTGCATCGACCCTTACGCCCAAGcggggt                                                                                                                          >  8:122444/1‑144 (MQ=2)                           cGGTCTTCACCCGCGCATCACTGTCAGGCAGTTCGCGCGCTTTGAAGGCCATCAGCATCCCCTCCAGCAGGCACACTAGCCCGGAAACACGCACTTTGTAGAAGTCACTGTTCCGGGCCTGCATCAAc                                                                                                                                             >  4:34160/1‑128 (MQ=38)                           cGGTCTTCACCCGCGCATCACTGTCAGGCAGTTCGCGCGCTTTGAAGGCCATCAGCATCCCCTCCAGCAGGCACACTAGCCCGGAAACACGCACTTTGTAGAAGTCACTGTTCCGGGCCTGCATCAAc                                                                                                                                             <  3:34160/128‑1 (MQ=38)                           cGGTCTTCACCCGCGCATCACTGTCAGGCAGTTCGCGCGCTTTGAAGGCCATCAGCATCCCCTCCAGCAGGCACACTAGCCCGGAAACACGCACTTTGTAGAAGTCACTGTTCCGGGCCTGCATCAACCCTTCAGCCCAAGCCTGGTc                                                                                                                         >  5:318399/1‑148 (MQ=37)                                   aCCCGCGCATCACTGTCAGGCAGTTCGCGCGCTTTGAAGGCCATCAGCATCCCCTCCAGCAGGCACACTAGCCCGGAAACACGCACTTTGTAGAAGTCACTGTTCCGGGCCTGCATCAACCCTTCAGCCCAAGCCTGGTCGAGGTACCt                                                                                                                <  7:122882/149‑1 (MQ=37)                                     ccGCGCATCACTGTCAGGCAGTTCGCGCGCTTTGAAGGCCATCAGCATCCCCTCCAGCAGGCACACTAGCCCGGAAACACGCACTTTGTAGAAGTCACTGTTCCGGGCCTGCATCAACCCTTCAGCCCAAGCCTGGTCGAGGTACCtt                                                                                                               >  3:239800/1‑148 (MQ=37)                                      cgcgCATCACTGTCAGGCAGTTCGCGCGCTTTGAAGGCCATCAGCATCCCCTCCAGCAGGCACACTAGCCCGGAAACACGCACTTTGTAGAAGTCACTGTTCCGGGCCTGCATCAACCCTTCAGCCCAAGCCTGGTCGAGGTACCTTGa                                                                                                             <  7:72968/149‑1 (MQ=37)                                      cgcgCATCACTGTCAGGCAGTTCGCGCGCTTTGAAGGCCATCAGCATCCCCTCCAGCAGGCACACTAGCCCGGAAACACGCACTTTGTAGAAGTCACTGTTCCGGGCCTGCATCAACCCTTCAGCCCAAGCCTGGTCGAGGTACCTTGa                                                                                                             <  5:102641/149‑1 (MQ=37)                                         gcATCACTGTCAGGCAGTTCGCGCGCTTTGAAGGCCATCAGCATCCCCTCCAGCAGGCACACTAGCCCGGAAACACGCACTTTGTAGAAGTCACTGTTCCGGGCCTGCATCAACCCTTCAGCCCAAGCCTGGTCGAGGTACCTTGATAc                                                                                                          <  5:3050/149‑1 (MQ=37)                                           aTCACTGTCAGGCAGTTCGCGCGCTTTGAAGGCCATCAGCATCCCCTCCAGCAGGCACACTAGCCCGGAAACACGCACTTTGTAGAAGTCACTGTTCCGGGCCTGCATCAACCCTTCAGCCCAAGCCTGGTCGAGGTACCTTGATACCt                                                                                                        <  8:199268/149‑1 (MQ=37)                                           aTCACTGTCAGGCAGTTCGCGCGCTTTGAAGGCCATCAGCATCCCCTCCAGCAGGCACACTAGCCCGGAAACACGCACTTTGTAGAAGTCACTGTTCCGGGCCTGCATCAACCCTTCAGCCCAAGCCTGGTCGAGGTACCTTGATACCt                                                                                                        >  4:271599/1‑149 (MQ=37)                                                     ggCAGTTCGCGCGCTTTGAAGGCCATCAGCATCCCCTCCAGCAGGCACACTAGCCCGGAAACACGCACTTTGTAGAAGTCACTGTTCCGGGCCTGCATCAACCCTTCAGCCCAAGCCTGGTCGAGGTACCTTGATACCTGGCctgcgct                                                                                              >  6:122479/1‑149 (MQ=37)                                                        aGTTCGCGCGCTTTGAAGGCCATCAGCATCCCCTCCAGCAGGCACACTAGCCCGGAAACACGCACTTTGTAGAAGTCACTGTTCCGGGCCTGCATCAAcc                                                                                                                                            <  8:292518/100‑1 (MQ=39)                                                        aGTTCGCGCGCTTTGAAGGCCATCAGCATCCCCTCCAGCAGGCACACTAGCCCGGAAACACGCACTTTGTAGAAGTCACTGTTCCGGGCCTGCATCAAcc                                                                                                                                            >  7:292518/1‑100 (MQ=39)                                                         gTTCGCGCGCTTTGAAGGCCATCAGCATCCCCTCCAGCAGGCACACTAGCCCGGAAACACGCACTTTGTAGAAGTCACTGTTCCGGGCCTGCATCAACCCTTCAGCCCAAGCCTGGTCGAGGTACCTTGATACCTGGCCTGCGCTGCGt                                                                                          <  5:122479/149‑1 (MQ=35)                                                             gcgcgcTTTGAAGGCCATCAGCATCCCCTCCAGCAGGCACACTAGCCCGGAAACACGCACTTTGTAGAAGTCACTGTTCCGGGCCTGCATCAACCCTTCAGCCCAAGCCTGGTCGAGGTACCTTGATACCTGGCCTGCGCTGCGTtgtg                                                                                      <  3:41467/149‑1 (MQ=34)                                                             gcgcgcTTTGAAGGCCATCAGCATCCCCTCCAGCAGGCACACTAGCCCGGAAACACGCACTTTGTAGAAGTCACTGTTCCGGGCCTGCATCAACCCTTCAGCCCAAGCCTGGTCGAGGTACCTTGATACCTGGCCTGCGCTGCGTtgt                                                                                       <  6:77787/148‑1 (MQ=34)                                                             ccagggtttgcggctgactttgttcgcttcggtgcatgaaacggctgtcgatattcgcctgagtgaagctgcacgtagcgggcagccCATCAACCCTTCAGCCCAAGCCTGGTCGAGGTACCTTGATACCTGGCCTGCGCTGCGTtgtg                                                                                      <  7:107424‑M1/62‑1 (MQ=255)                                                              cgcgcTTTGAAGGCCATCAGCATCCCCTCCAGCAGGCACACTAGCCCGGAAACACGCACTTTGTAGAAGTCACTGTTCCGGGCCTGCATCAACCCTTCAGCCCAAGCCTGGTCGAGGTACCTTGATACCTGGCCTGCGCTGCGTTGTgg                                                                                     <  5:308619/149‑1 (MQ=34)                                                              cgcgcTTTGAAGGCCATCAGCATCCCCTCCAGCAGGCACACTAGCCCGGAAACACGCACTTTGTAGAAGTCACTGTTCCGGGCCTGCATCAACCCTTCAGCCCAAGCCTGGTCGAGGTACCTTGATACCTGGCCTGCGCTGCGTTGTgg                                                                                     <  6:67214/149‑1 (MQ=34)                                                                 gcTTTGAAGGCCATCAGCATCCCCTCCAGCAGGCACACTAGCCCGGAAACACGCACTTTGTAGAAGTCACTGTTCCGGGCCTGCATCAACCCTTCAGCCCAAGCCTGGTCGAGGTACCTTGATACCTGGCCTGCGCTGCGTTGTGGGtt                                                                                  <  3:189235/149‑1 (MQ=34)                                                                   tttGAAGGCCATCAGCATCCCCTCCAGCAGGCACACTAGCCCGGAAACACGCACTTTGTAGAAGTCACTGTTCCGGGCCTGCATCAACCCTTCAGCCCAAGCCTGGTCg                                                                                                                        >  3:284326/1‑109 (MQ=35)                                                                   tttGAAGGCCATCAGCATCCCCTCCAGCAGGCACACTAGCCCGGAAACACGCACTTTGTAGAAGTCACTGTTCCGGGCCTGCATCAACCCTTCAGCCCAAGCCTGGTCg                                                                                                                        <  4:284326/109‑1 (MQ=35)                                                                   tttGAAGGCCATCAGCATCCCCTCCAGCAGGCACACTAGCCCGGAAACACGCACTTTGTAGAAGTCACTGTTCCGGGCCTGCATCAACCCTTCAGCCCAAGCCTGGTCGAGGTACCTTGATACCTGGCCTGCGCTGCGTtgtg                                                                                      <  5:291538/143‑1 (MQ=34)                                                                   tttGAAGGCCATCAGCATCCCCTCCAGCAGGCACACTAGCCCGGAAACACGCACTTTGTAGAAGTCACTGTTCCGGGCCTGCATCAACCCTTCAGCCCAAGCCTGGTCGAGGTACCTTGATACCTGGCCTGCGCTGCGTtgtg                                                                                      >  6:291538/1‑143 (MQ=34)                                                                     tgcggctgactttgttcgcttcggtgcatgaaacggctgtcgatattcgcctgagtgaagctgcacgtagcgggcagccCATCAACCCTTCAGCCCAAGCCTGGTCGAGGTACCTTGATACCTGGCCTGCGCTGCGTTGTGGGTTGAt                                                                               >  3:299605‑M1/80‑148 (MQ=255)                                                                      gcggctgactttgttcgcttcggtgcatgaaacggctgtcgatattcgcctgagtgaagctgcacgtagcgggcagccCATCAACCCTTCAGCCCAAGCCTGGTCGAGGTACCTTGATACCTGGCCTGCGCTGCGTTGTGGGTTGATg                                                                              >  5:304301‑M1/79‑148 (MQ=255)                                                                      gAAGGCCATCAGCATCCCCTCCAGCAGGCACACTAGCCCGGAAACACGCACTTTGTAGAAGTCACTGTTCCGGGCCTGCATCAACCCTTCAGCCCAAGCCTGGTCGAGGTACCTTGATACCTGGCCTGCGCTGCGTTGTGGGTTGATg                                                                              <  4:81286/148‑1 (MQ=34)                                                                       aaGGCCATCAGCATCCCCTCCAGCAGGCACACTAGCCCGGAAACACGCACTTTGTAGAAGTCACTGTTCCGGGCCTGCATCAACCCTTCAGCCCAAGCCTGGTCGAGGTACCTTGATACCTGGCCTGCGCTGCGTTGTGGGTTGATggg                                                                            <  4:239800/149‑1 (MQ=34)                                                                         gctgactttgttcgcttcggtgcatgaaacggctgtcgatattcgcctgagtgaagctgcacgtagcgggcagccCATCAACCCTTCAGCCCAAGCCTGGTCGAGGTACCTTGATACCTGGCCTGCGCTGCGTTGTGGGTTGATGGGCt                                                                          >  8:107424‑M1/76‑149 (MQ=255)                                                                          gCCATCAGCATCCCCTCCAGCAGGCACACTAGCCCGGAAACACGCACTTTGTAGAAGTCACTGTTCCGGGCCTGCATCAACCCTTCAGCCCTAGCCTGGTCGAGGTACCTTGATACCTGGCCTGCGCTGCGTTGTGGGTTGATagg                                                                            >  2:169538/1‑146 (MQ=21)                                                                          gCCATCAGCATCCCCTCCAGCAGGCACACTAGCCCGGAAACACGCACTTTGTAGAAGTCACTGTTCCGGGCCTGCATCAACCCTTCAGCCCTAGCCTGGTCGAGGTACCTTGATACCTGGCCTGCGCTGCGTTGTGGGTTGATagg                                                                            <  1:169538/146‑1 (MQ=21)                                                                                       ccTCCAGCAGGCACACTAGCCCGGAAACACGCACTTTGTAGAAGTCACTGTTCCGGGCCTGCATCAACCCTTCAGCCCAAGCCTGGTCGAGGTACCTTGATACCTGGCCTGCGCTGCGTTGTGGGTTGATGGGCTGCCCGCTACGTg                                                              >  7:128561/1‑147 (MQ=34)                                                                                       ccTCCAGCAGGCACACTAGCCCGGAAACACGCACTTTGTAGAAGTCACTGTTCCGGGCATGCATCAACCCTTCAGCCCAAGCATTGTCGAGGTACCTTGATACCTGGCCTGCGCTGCGTTGTGGGTTGATTGGCTGCCCGCTACGTGCa                                                            <  3:235985/149‑1 (MQ=255)                                                                                          ccAGCAGGCACACTAGCCCGGAAACACGCACTTTGTAGAAGTCACTGTTCCGGGCCTGCATCAACCCTTCAGCCCAAGCCTGGTCGAGGTACCTTGATACCTGGCCTGCGCTGCGTTGTGGGTTGATGGGCTGCCCGCTACGTGCAGCt                                                         >  6:81083/1‑149 (MQ=34)                                                                                           cagcagGCACACTAGCCCGGAAACACGCACTTTGTAGAAGTCACTGTTCCGGGCCTGCATCAACCCTTCAGCCCAAGCCTGGTCGAGGTACCTTGATACCTGGCCTGCGCTGCGTTGTGGGTTGATGGGCTGCCCGCTACGTGCAGCtt                                                        >  4:256675/1‑149 (MQ=34)                                                                                                  cacaCTAGCCCGGAAACACGCACTTTGTAGAAGTCACTGTTCCGGGCCTGCATCAACCCTTCAGCCCAAGCCTGGTCGAGGTACCTTGATACCTGGCCTGCGCTGCGTTGTGGGTTGATGGGCTGCCCGCTACGTGCAGCTTCACTCAg                                                 <  3:256675/149‑1 (MQ=34)                                                                                                       tAGCCCGGAAACACGCACTTTGTAGAAGTCACTGTTCCGGGCCTGCATCAACCCTTCAGCCCAAGCCTGGTCGAGGTACCTTGATACCTGGCCTGCGCTGCGTTGTGGGTTGATGGGCTGCCCGCTACGTGCAGCTTCACTCAGGCGaa                                            >  2:143598/1‑149 (MQ=32)                                                                                                                                              ggCCTGCATCAACCCTTCAGCCCAAGCCTGGTCGAGGTACCTTGATACCTGGCCTGCGCTGCGTTGTGGGTTGATGGGCTGCCCGCTACGTGCAGCTTCACTCAGGCGAATATCGACAGCCGTTTCATGCACCGAAGCGAACAAGGt       >  2:70459/1‑147 (MQ=32)                                                                                                                                               gCCTGCATCAACCCTTCAGCCCAAGCCTGGTCGAGGTACCTTGATACCTGGCCTGCGCTGCGTTGTGGGTTGATGGGCTGCCCGCTACGTGCAGCTTCACTCAGGCGAATATCGACAGCCGTTTCATGCACCGAAGCGAACAAGGTCAg    >  4:249809/1‑149 (MQ=32)                                                                                                                                                ccTGCATCAACCCTTCAGCCCAAGCCTGGTCGAGGTACCTTGATACCTGGCCTGCGCTGCGTTGTGGGTTGATGGGCTGCCCGCTACGTGCAGCTTCACTCAGGCGAATATCGACAGCCGTTTCATGCACCGAAGCGAACAAGGTCAGc   >  7:93780/1‑149 (MQ=32)                                                                                                                                                 cTGCATCAACCCTTCAGCCCAAGCCTGGTCGAGGTACCTTGATACCTGGCCTGCGCTGCGTTGTGGGTTGATGGGCTGCCCGCTACGTGCAGCTTCACTCAGGCGAATATCGACAGCCGTTTCATGCACCGAAGCGAACAAGGTCAGcc  >  6:168108/1‑149 (MQ=32)                                                                                                                                                    |                                                                                                                                                  CGTAGTCATCGCGGCCGCCAGGAGTTCGGTCTTCACCCGCGCATCACTGTCAGGCAGTTCGCGCGCTTTGAAGGCCATCAGCATCCCCTCCAGCAGGCACACTAGCCCGGAAACACGCACTTTGTAGAAGTCACTGTTCCGGGCCTGCATCAACCCTTCAGCCCAAGCCTGGTCGAGGTACCTTGATACCTGGCCTGCGCTGCGTTGTGGGTTGATGGGCTGCCCGCTACGTGCAGCTTCACTCAGGCGAATATCGACAGCCGTTTCATGCACCGAAGCGAACAAGGTCAGCC  >  NC_002947/2361777‑2362069

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.