New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2407945 =	43 (0.870)	6 (0.130)	4/248	NT	11.9%	coding (620/1566 nt)	PP_2111	aerotaxis receptor
	?	NC_002947	2408003 =	47 (0.980)					coding (562/1566 nt)	PP_2111	aerotaxis receptor

CTGGTCGCTCAGGTGTTCGGCACTGTCTTGAAGACGCGTCAGGCAGGTTTTCATGCGTGCGTCCTGGCTGAGCATGGCCATTTCCAGGCGCGCCTGCACGCCACGGCTGTCGGTGAACATCTGCGCGATCAGTGGGTCGGAAGTGGTTTGCTCGGCCAGGCGCAGCAGGCGCTTGAGGCCGCGCTGCTGCCAGCTCAGGCCAAGCAGACCCAGTGGTACCGAAAGCCCTG‑CGGCCAAGGCAAAGCCCCAGGAATGACCCAGCCAGTTGCCGATCAGGAAGCCCACCTGGCTGATCA  >  NC_002947/2407797‑2408092                                                                                                                                                     |                                                                                                                                                     cTGGTCGCTCAGGTGTTCGGCACTGTCTTGAAGACGCGTCAGGCAGGTTTTCATGCGTGCGTCCTGGCTGAGCATGGCCATTTCCAGGCGCGCCTGCACGCCACGGCTGTCGGTGAACATCTGCGCGATCAGTGGGTCGGAAGTGGttt                                                                                                                                                      >  1:159060/1‑149 (MQ=255)    atCGCTCAGGTGTTCGGCACTGTCTTGAAGACGCGTCAGGCAGGTTTTCATGCGTGCGTCCTGGCTGAGCATGGCCATTTCCAGGCGCGCCTGCACGCCACGGCTGTCGGTGAACATCTGCGCGATCAGTGGGTCGGAAGTGGTTTg                                                                                                                                                     <  2:60521/146‑1 (MQ=255)         tCAGGTGTTCGGCACTGTCTTGAAGACGCGTCAGGCAGGTTTTCATGCGTGCGTCCTGGCTGAGCATGGCCATTTCCAGGCGCGCCTGCACGCCACGGCTGTCGGTGAACATCTGCGCGATCAGTGGGTCGGAAGTGGTTTGCTCGGc                                                                                                                                               >  4:144442/1‑148 (MQ=255)               gtTCGGCACTGTCTTGAAGACGCGTCAGGCAGGTTTTCATGCGTGCGTCCTGGCTGAGCATGGCCATTTCCAGGCGCGCCTGCACGCCACGGCTGTCGGTGAACATCTGCGCGATCAGTGGGTCGGAAGTGGTTTGCTCGGCCAGgcg                                                                                                                                         >  2:90281/1‑148 (MQ=255)                        tGTCTTGAAGACGCGTCAGGCAGGTTTTCATGCGTGCGTCCTGGCTGAGCATGGCCATTTCCAGGCGCGCCTGCACGCCACGGCTGTCGGTGAACATCTGCGCGATCAGTGGGTCGGAAGTGGTTTGCTCGGCCAGGCGCAGCAGgcgc                                                                                                                               >  8:195016/1‑149 (MQ=255)                          tCTTGAAGACGCGTCAGGCAGGTTTTCATGCGTGCGTCCTGGCTGAGCATGGCCATTTCCAGGCGCGCCTGCACGCCACGGCTGTCGGTGAACATCTGCGCGATCAGTGGGTCGGAAGTGGTTTGCTCGGCCAGGCGCAGCAGGCGCtt                                                                                                                             >  5:324844/1‑149 (MQ=255)                               aaGACGCGTCAGGCAGGTTTTCATGCGTGCGTCCTGGCTGAGCATGGCCATTTCCAGGCGCGCCTGCACGCCACGGCTGTCGGTGAACATCTGCGCGATCAGTGGGTCGGAAGTGGTTTGCTCGGCCAGGCGCAGCAGGCGCTTGAgg                                                                                                                         <  3:144442/148‑1 (MQ=255)                                aGACGCGTCAGGCAGGTTTTCATGCGTGCGTCCTGGCTGAGCATGGCCATTTCCAGGCGCGCCTGCACGCCACGGCTGTCGGTGAACATCTGCGCGATCAGTGGGTCGGAAGTGGTTTGCTCGGCCAGGCGCAGCAGGCGCTTGAGGcc                                                                                                                       >  2:85686/1‑149 (MQ=255)                                          ggcaggTTTTGATGCGTGCGTCCTGGCTGAGCTTGGGCATTTCCAGGCGCGCCTGCACGCCAGGGCTGTCGGTGAATATCTGCTAGATCTGTGTGGCGGAAGTGGTTTTCTCGGCCATGGGCTGCAGGCTCTTGAGGCCGGgctgcttc                                                                                                             <  6:97793/149‑3 (MQ=255)                                          ggcaggTTTTCATGCGTGCGTCCTGGCTGAGCATGGCCATTTCCAGGCGCGCCTGCACGCCACGGCTGTCGGTGAACATCTGCGCGATCAGTGGGTCGGAAGTGGTTTGCTCGGCCAGGCGCAGCAGGCGCTTGAGGCCGCGCtgctgc                                                                                                             <  8:153349/149‑1 (MQ=255)                                             aggTTTTCATGCGTGCGTCCTGGCTGAGCATGGCCATTTCCAGGCGCGCCTGCACGCCACGGCTGTCGGTGAACATCTGCGCGATCAGTGGGTCGGAAGTGGTTTGCTCGGCCAGGCGCAGCAGGCGCTTGAGGCCGCGCTGCTGCCAg                                                                                                          >  2:136423/1‑149 (MQ=255)                                                    cATGCGTGCGTCCTGGCTGAGCATGGCCATTTCCAGGCGCGCCTGCACGCCACGGCTGTCGGTGAACATCTGCGCGATCAGTGGGTCGGAAGTGGTTTGCTCGGCCAGGCgcagc                                                                                                                                     <  8:277383/115‑1 (MQ=255)                                                    cATGCGTGCGTCCTGGCTGAGCATGGCCATTTCCAGGCGCGCCTGCACGCCACGGCTGTCGGTGAACATCTGCGCGATCAGTGGGTCGGAAGTGGTTTGCTCGGCCAGGCgcagc                                                                                                                                     >  7:277383/1‑115 (MQ=255)                                                        tcctgatcagccaggtgggcttcctgatcggcaactggctgggtcattcctggggctttgccttggccgcagggctttcggtaccactgggtcTGCTCGGCCAGGCGCAGCAGGCGCTTGAGGCCGCGCTGCTGCCAGCTCAGGCCAAg                                                                                               <  4:258025‑M1/56‑1 (MQ=255)                                                         cctgatcagccaggtgggcttcctgatcggcaactggctgggtcattcctggggctttgccttggccgcagggctttcggtaccactgggtcTGCTCGGCCAGGCGCAGCAGGCGCTTGAGGCCGCGCTGCTGCCAGCTCAGGCCAAGc                                                                                              >  3:258025‑M1/93‑149 (MQ=255)                                                               ccTGGCTGAGCATGGCCATTTCCAGGCGCGCCTGCACGCCACGGCTGTCGGTGAACATCTGCGCGATCAGTGGGTCGGAAGTGGTTTGCTCGGCCAGGCGCAGCAGGCGCTTGAGGCCGCGCTGCTGCCAGCTCAGGCCAAg                                                                                               <  4:117647/142‑1 (MQ=255)                                                               ccTGGCTGAGCATGGCCATTTCCAGGCGCGCCTGCACGCCACGGCTGTCGGTGAACATCTGCGCGATCAGTGGGTCGGAAGTGGTTTGCTCGGCCAGGCGCAGCAGGCGCTTGAGGCCGCGCTGCTGCCAGCTCAGGCCAAg                                                                                               >  3:117647/1‑142 (MQ=255)                                                                   gCTGAGCATGGCCATTTCCAGGCGCGCCTGCACGCCACGGCTGTCGGTGAACATCTGCGCGATCAGTGGGTCGGAAGTGGTTTGCTCGGCCAGGCGCAGCAGGCGCTTGAGGCCGCGCTGCTGCCAGCTCAGGCCAAGCAGACCCAGt                                                                                     <  1:136423/148‑1 (MQ=255)                                                                     tGAGCATGGCCATTTCCAGGCGCGCCTGCACGCCACGGCTGTCGGTGAACATCTGCGCGATCAGTGGGTCGGAAGTGGTTTGCTCGGCCAGGCGCAGCAGGCGCTTGAGGCCGCGCTGCTGCCAGCTCAGGCCAAGCAGACCCAGTg                                                                                    <  3:8030/147‑1 (MQ=255)                                                                     tGAGCATGGCCATTTCCAGGCGCGCCTGCACGCCACGGCTGTCGGTGAACATCTGCGCGATCAGTGGGTCGGAAGTGGTTTGCTCGGCCAGGCGCAGCAGGCGCTTGAGGCCGCGCTGCTGCCAGCTCAGGCCAAGCAGACCCAGTg                                                                                    >  4:8030/1‑147 (MQ=255)                                                                              ccATTTCCAGGCGCGCCTGCACGCCACGGCTGTCGGTGAACATCTGCGCGATCAGTGGGTCGGAAGTGGTTTGCTCGGCCAGGCGCAGCAGGCGCTTGAGGCCGCGCTGCTGCCAGCTCAGGCCaa                                                                                                >  6:194009/1‑126 (MQ=255)                                                                              ccATTTCCAGGCGCGCCTGCACGCCACGGCTGTCGGTGAACATCTGCGCGATCAGTGGGTCGGAAGTGGTTTGCTCGGCCAGGCGCAGCAGGCGCTTGAGGCCGCGCTGCTGCCAGCTCAGGCCaa                                                                                                <  5:194009/126‑1 (MQ=255)                                                                               cATTTCCAGGCGCGCCTGCACGCCACGGCTGTCGGTGAACATCTGCGCGATCAGTGGGTCGGAAGTGGTTTGCTCGGCCAGGCGCAGCAGGCGCTTGAGGCCGCGCTGCTGCCAGCTCAGGCCAAGCAGACCCAGTGGTACCGAAAGcc                                                                        >  5:172186/1‑149 (MQ=255)                                                                               cATTTCCAGGCGCGCCTGCACGCCACGGCTGTCGGTGAACATCTGCGCGATCAGTGGGTCGGAAGTGGTTTGCTCGGCCAGGCGCAGCAGGCGCTTGAGGCCGCGCTGCTGCCAGCTCAGGCCAAGCAGACCCAGTGGTACCGAAAGcc                                                                        >  5:242854/1‑149 (MQ=255)                                                                                  ttCCAGGCGCGCCTGCACGCCACGGCTGTCGGTGAACATCTGCGCGATCAGTGGGTCGGAAGTGGTTTGCTCGGCCAGGCGCAGCAGGCGCTTGAGGCCGCGCTGCTGCCAGCTCAGGCCAAGCAGACCCAGTGGTACCGAAAGCCCTg                                                                     >  3:286482/1‑149 (MQ=255)                                                                                    ccAGGCGCGCCTGCACGCCACGGCTGTCGGTGAACATCTGCGCGATCAGTGGGTCGGAAGTGGTTTGCTCGGCCAGGCGCAGCAGGCGCTTGAGGCCGCGCTGCTGCCAGCTCAGGCCAAGCAGACCCAGTGGTACCGAAAGCCCTG‑c                                                                   <  6:172186/148‑1 (MQ=255)                                                                                    ccAGGCGCGCCTGCACGCCACGGCTGTCGGTGAACATCTGCGCGATCAGTGGGTCGGAAGTGGTTTGCTCGGCCAGGCGCAGCAGGCGCTTGAGGCCGCGCTGCTGCCAGCTCAGGCCAAGCAGACCCAGTGGTACCGAAAGCCCTG‑Cg                                                                  >  6:306046/1‑149 (MQ=255)                                                                                     cAGGCGCGCCTGCACGCCACGGCTGTCGGTGAACATCTGCGCGATCAGTGGGGCGGAAGTGGTTTGCTCGGCCAGGCGCAGCAGGCGCTTGAGGCCGCGCTGCTGCCAGCTCAGGCCAAGCAGACCCAGTGGTACCGAAAGCCCTG‑Cg                                                                  <  6:81791/148‑1 (MQ=255)                                                                                                      cACGGCTGTCGGTGAACATCTGCGCGATCAGTGGGTCGGAAGTGGTTTGCTCGGCCAGGCGCAGCAGGCGCTTGAGGCCGCGCTGCTGCCAGCTCAGGCCAAGCAGACCCAGTGGTACCGAAAGCCCTG‑CGGCCAAGGCAAAGccc                                                   >  3:235034/1‑146 (MQ=255)                                                                                                      cACGGCTGTCGGTGAACATCTGCGCGATCAGTGGGTCGGAAGTGGTTTGCTCGGCCAGGCGCAGCAGGCGCTTGAGGCCGCGCTGCTGCCAGCTCAGGCCAAGCAGACCCAGTGGTACCGAAAGCCCTG‑CGGCCAAGGCAAAGCCCCa                                                 <  4:235034/148‑1 (MQ=255)                                                                                                      cACGGCTGTCGGTGAACATCTGCGCGATCAGTGGGTCGGAAGTGGTTTGCTCGGCCAGGCGCAGCAGGCGCTTGAGGCCGCGCTGCTGCCAGCTCAGGCCAAGCAGACCCAGTGGTACCGAAAGCCCTG‑CGGCCAAGGCAAAGCCCCAg                                                >  2:298846/1‑149 (MQ=255)                                                                                                      cACGGCTGTCGGTGAACATCTGCGCGATCAGTGGGTCGGAAGTGGTTTGCTCGGCCAGGCGCAGCAGGCGCTTGAGGCCGCGCTGCTGCCAGCTCAGGCCAAGCAGACCCAGTGGTACCGAAAGCCCTG‑CGGCCAAGGCAAAGCCCCAg                                                >  8:109087/1‑149 (MQ=255)                                                                                                          gCTGTCGGTGAACATCTGCGCGATCAGTGGGTCGGAAGTGGTTTGCTCGGCCAGGCGCAGCAGGCGCTTGAGGCCGCGCTGCTGCCAGCTCAGGCCAAGCAGACCCAGTGGTACCGAAAGCCCTG‑CGGCCAAGGCAAAGCCCCAGGAAt                                            <  7:109087/149‑1 (MQ=255)                                                                                                            tGTCGGTGAACATCTGCGCGATCAGTGGGTCGGAAGTGGTTTGCTCGGCCAGGCGCAGCAGGCGCTTGAGGCCGCgcttc                                                                                                                >  7:203852/1‑78 (MQ=255)                                                                                                            tGTCGGTGAACATCTGCGCGATCAGTGGGTCGGAAGTGGTTTGCTCGGCCAGGCGCAGCAGGCGCTTGAGGCCGCgctgc                                                                                                                <  8:203852/80‑1 (MQ=255)                                                                                                              tCGGTGAACATCTGCGCGATCAGTGGGTCGGAAGTGGTTTGCTCGGCCAGGCGCAGCAGGCGCTTGAGGCCGCGCTGCTGCCAGCTCAGGCCAAGCAGACCCAGTGGTACCGAAAGCCCTG‑CGGCCAAg                                                            >  8:149512/1‑129 (MQ=255)                                                                                                              tCGGTGAACATCTGCGCGATCAGTGGGTCGGAAGTGGTTTGCTCGGCCAGGCGCAGCAGGCGCTTGAGGCCGCGCTGCTGCCAGCTCAGGCCAAGCAGACCCAGTGGTACCGAAAGCCCTG‑CGGCCAAg                                                            <  7:149512/129‑1 (MQ=255)                                                                                                                 ttgccttggccgcagggctttcggtaccactgggtcTGCTCGGCCAGGCGCAGCAGGCGCTTGAGGCCGCGCTGCTGCCAGCTCAGGCCAAGCAGa                                                                                           >  5:95151‑M1/37‑96 (MQ=255)                                                                                                                 ttgccttggccgcagggctttcggtaccactgggtcTGCTCGGCCAGGCGCAGCAGGCGCTTGAGGCCGCGCTGCTGCCAGCTCAGGCCAAGCAGa                                                                                           >  5:90639‑M1/37‑96 (MQ=255)                                                                                                                 ttgccttggccgcagggctttcggtaccactgggtcTGCTCGGCCAGGCGCAGCAGGCGCTTGAGGCCGCGCTGCTGCCAGCTCAGGCCAAGCAGa                                                                                           <  6:90639‑M1/60‑1 (MQ=255)                                                                                                                 ttgccttggccgcagggctttcggtaccactgggtcTGCTCGGCCAGGCGCAGCAGGCGCTTGAGGCCGCGCTGCTGCCAGCTCAGGCCAAGCAGa                                                                                           <  6:95151‑M1/60‑1 (MQ=255)                                                                                                                  tGAACATCTGCGCGATCAGTGGGTCGGAAGTGGTTTGCTCGGCCAGGCGCAGCAGGCGCTTGAGGCCGCGCTGCTGCCAGCTCAGGCCAAGCAGACCCAGTGGTACCGAAAGCCCTG‑CGGCCAAGGCAAAGCCCCAGGAATGACccagc                                    >  1:265901/1‑149 (MQ=255)                                                                                                                            cgcgATCAGTGGGTCGGAAGTGGTTTGCTCGGCCAGGCGCAGCAGGCGCTTGAGGCCGCGCTGCTGCCAGCTCAGGCCAAGCAGACCCAGTGGTACCGAAAGCCCTG‑CGGCCAAGGCAAAGCCCCAGGAATGACCCAGCCAGTTGCCGa                          <  7:195016/149‑1 (MQ=255)                                                                                                                                aTCAGTGGGTCGGAAGTGGTTTGCTCGGCCAGGCGCAGCAGGCGCTTGAGGCCGCGCTGCTGCCAGCTCAGGCCAAGCAGACCCAGTGGTACCGAAAGCCCTG‑CGGCCAAGGCAAAGCCCCAGGAATGACCCAGCCAGTTGCCGATCAg                      >  5:289144/1‑149 (MQ=255)                                                                                                                                 tCAGTGGGTCGGAAGTGGTTTGCTCGGCCAGGCGCAGCAGGCGCTTGAGGCCGCGCTGCTGCCAGCTCAGGGCAAGCAGACCCAGTGGTACCGAAAGCCCTG‑CGGCCAAGGCAAAGCCCCAGGAATGACCCAGCCAGTTGCCGATCAg                      >  5:295626/1‑148 (MQ=255)                                                                                                                                        gTCGGAAGTGGTTTGCTCGGCCAGGCGCAGCAGGCGCTTGAGGCCGCGCTGCTGCCAGCTCAGGCCAAGCAGACCCAGTGGTACCGAAAGCCCTG‑CGGCCAAGGCAAAGCCCCAGGAATGACCCAGCCAGTTGCCGATCAGGaa                   <  8:122525/144‑1 (MQ=255)                                                                                                                                        gTCGGAAGTGGTTTGCTCGGCCAGGCGCAGCAGGCGCTTGAGGCCGCGCTGCTGCCAGCTCAGGCCAAGCAGACCCAGTGGTACCGAAAGCCCTG‑CGGCCAAGGCAAAGCCCCAGGAATGACCCAGCCAGTTGCCGATCAGGAAgagat              >  7:122525/1‑145 (MQ=255)                                                                                                                                         tCGGAAGTGGTTTGCTCGGCCAGGCGCAGCAGGCGCTTGAGGCCGCGCTGCTGCCAGCTCAGGCCAAGCAGACCCAGTGGTACCGAAAGCCCTG‑CGGCCAAg                                                            <  6:19009/102‑1 (MQ=255)                                                                                                                                         tCGGAAGTGGTTTGCTCGGCCAGGCGCAGCAGGCGCTTGAGGCCGCGCTGCTGCCAGCTCAGGCCAAGCAGACCCAGTGGTACCGAAAGCCCTG‑CGGCCAAg                                                            >  5:19009/1‑102 (MQ=255)                                                                                                                                          cGGAAGTGGTTTGCTCGGCCAGGCGCAGCAGGCGCTTGAGGCCGCGCTGCTGCCAGCTCAGGCCAAGCAGACCCAGTGGTACCGAAAGCCCTG‑CGGCCAAGGCAAAGCCCCAGGAATGACCCAGCCAGTTGCCGATCAGGAAGCCCAcc            <  6:295626/149‑1 (MQ=255)                                                                                                                                              aGTGGTTTGCTCGGCCAGGCGCAGCAGGCGCTTGAGGCCGCGCTGCTGCCAGCTCAGGCCAAGCAGACCCAGTGGTACCGAAAGCCCTGTCGGCCAAGGCAAAGCCCCAGGAATGACCCAGCCAGTTGCCGATCAGGAAGCCCACCTgg         <  1:90281/149‑1 (MQ=255)                                                                                                                                                  gTTTGCTCGGCCAGGCGCAGCAGGCGCTTGAGGCCGCGCTGCTGCCAGCTCAGGCCAAGCAGACCCAGTGGTACCGAAAGCCCTG‑CGGCCAAgg                                                           <  6:196744/94‑1 (MQ=255)                                                                                                                                                  gTTTGCTCGGCCAGGCGCAGCAGGCGCTTGAGGCCGCGCTGCTGCCAGCTCAGGCCAAGCAGACCCAGTGGTACCGAAAGCCCTG‑CGGCCAAgg                                                           >  5:196744/1‑94 (MQ=255)                                                                                                                                                     TGCTCGGCCAGGCGCAGCAGGCGCTTGAGGCCGCGCTGCTGCCAGCTCAGGCCAAGCAGACCCAGTGGTACCGAAAGCCCTG‑CGGCCAAGGCAAAGCCCCAGGAATGACCCAGCCAGTTGCCGATCAGGAAGCCCACCTGGCTGATCa  >  5:306046‑M1/1‑148 (MQ=255)                                                                                                                                                     TGCTCGGCCAGGCGCAGCAGGCGCTTGAGGCCGCGCTGCTGCCAGCTCAGGCCAAGCAGACCCAGTGGTACCGAAAGCCCTG‑CGGCCAAGGCAAAGCCCCAGGAATGACCCAGCCAGTTGCCGATCAGGAAGCCCACCTGGCTGATCa  >  1:253989‑M1/1‑148 (MQ=255)                                                                                                                                                     |                                                                                                                                                     CTGGTCGCTCAGGTGTTCGGCACTGTCTTGAAGACGCGTCAGGCAGGTTTTCATGCGTGCGTCCTGGCTGAGCATGGCCATTTCCAGGCGCGCCTGCACGCCACGGCTGTCGGTGAACATCTGCGCGATCAGTGGGTCGGAAGTGGTTTGCTCGGCCAGGCGCAGCAGGCGCTTGAGGCCGCGCTGCTGCCAGCTCAGGCCAAGCAGACCCAGTGGTACCGAAAGCCCTG‑CGGCCAAGGCAAAGCCCCAGGAATGACCCAGCCAGTTGCCGATCAGGAAGCCCACCTGGCTGATCA  >  NC_002947/2407797‑2408092

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.