New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2491759	42 (0.850)	3 (0.060)	3/242	NT	6.5%	coding (1182/2883 nt)	PP_2185	formate dehydrogenase subunit alpha
	?	NC_002947	= 2491788	47 (1.010)					coding (1211/2883 nt)	PP_2185	formate dehydrogenase subunit alpha

AACGAAGAAGCCTATCTGGTGCAGAAACTGGTGCGCACGGCCTTCGGTAACAACAACGTCGACACCTGCGCACGGGTATGCCATTCGCCCACCGGTTATGGCCTGAAGCAGACCCTGGGTGAGTCGGCCGGCACGCAAAGCTTCGACTCGGTGATGCAGGCCGACGTTGTGCTGGTGATTGGCGCCAACCCCACCGATGCGCACCCGGTGTTCGGCTCGCAACTCAAGCGCCGCCTGCGCCAAGGGGCGCGGCTGATCGTGATCGACCCACGGCG  >  NC_002947/2491631‑2491905                                                                                                                                 |                                                                                                                                                   aaCGAAGAAGCCTATCTGGTGCAGAAACTGGTGCGCACGGCCTTAGGTAACAACAACGTCGACAACTGCGCACGGGTATGCCATTCGCACACCGGTTATGGCCTGAAGCAGACCCTGGGTGAGTCGGCCGGCAAGCAAAGCTTCGAATc                                                                                                                                >  5:156624/1‑149 (MQ=255)      agaagCCTATCTGGTGCAGAAACTGGTGCGCACGGCCTTCGGTAACAACAACGTCGACACCTGCGCACGGGTATGCCATTCGCCCACCGGTTATGGCCTGAAGCAGACCCTGGGTGAGTCGGCCGGCACGCAAAGCTTCGACTCGGTGa                                                                                                                           >  1:302571/1‑149 (MQ=255)      agaagCCTATCTGGTGCAGAAACTGGTGCCCACGGCCTTCGGTAACAACAACGTCGACACCTGCGCACGGGTATGCCATTCGCCCACCGGTTATGGCCTGAAGCAGACCCTGGGTGAGTCGGCCGGCACGCAAAGCTTCGACTCGGTGa                                                                                                                           <  2:189415/149‑1 (MQ=255)           ccTATCTGGTGCAGCACCTGGTGCGCACGGCGTGGGGTAACAACAACGGCGACACCTGCGCGCGGGGATGCCATACGCCCACCGGTTATGGGCGGAAGCGGACCCTGGGTGAGTCGGCCGGGACGCGCAGGTTCGAGGCGGTGAGGCAg                                                                                                                      >  4:228848/1‑149 (MQ=255)             tATCTGGTGCAGAAACTGGTGCGCACGGCCTTCGGTAACAACAACGTCGACACCTGCGCACGGGTATGCCATTCGCCCACCGGTTATGGCCTGAAGCAGACCCTGGGTGAGTCGGCCGGCACGCAAAGCTTCGACTCGGTGATGCAggc                                                                                                                    <  2:188370‑M2/149‑4 (MQ=255)              aTCTGGTGCAGAAACTGGTGCGCACGGCCTTCGGTAACAACAACGTCGACACCTGCGCACGGGTATGCCATTCGCCCACCGGTTATGGCCTGAAGCAGACCCTGGGTGAGTCGGCCGGCACGCAAAGCTTCGACTCGGTGATGCAggcc                                                                                                                   <  8:167550‑M2/149‑5 (MQ=255)                 tGGTGCAGAAACTGGTGCGCACGGCCTTCGGTAACAACAACGTCGACACCTGCGCACGGGTATGCCATTCGCCCACCGGTTATGGCCTGAAGCAGACCCTGGGTGAGTCGGCCtgcatcaccgagtcgaagctttgcgtgccggccgac                                                                                                                >  5:258270‑M1/1‑113 (MQ=255)                   gTGCAGAAACTGGTGCGCACGGCCTTCGGTAACAACAACGTCGCCTCCTGCGCACGGGTATGCCATTCGCACATCGGTTATGGCCTGAAGCAGACCCTGGGTGAGTCGGCCtgcatcaccgagtcgaagctttgcgtgccggccgac                                                                                                                <  2:250267‑M1/147‑37 (MQ=255)                   gTGCAGAAACTGGTGCGCACGGCCTTCGGTAACAACAACGTCGACACCTGCGCACGGGTATGCCATTCGCCCACCGGTTATGGCCTGAAGCAGACCCTGGGTGAGTCGGCCtgcatcaccgagtcgaagctttgcgtgccggccgactc                                                                                                              <  6:258270‑M1/149‑39 (MQ=255)                    tGCAGAAACTGGTGCGCACGGCCTTCGGTAACAACAACGTCGACACCTGCGCACGGGTATGCCATTCGCCCACCGGTTATGGCCTGAAGCAGACCCTGGGTGAGTCGGCCGGCACGCAAAGCTTCGACTCGGTGATGCAGGCCGACGtt                                                                                                             <  5:269507/149‑1 (MQ=255)                    tGCAGAAACTGGTGCGCACGGCCTTCGGTAACAACAACGTCGACACCTGCGCACGGGTATGCCATACGCCCACCGGTTATGGCCTGAAGCAGACCCTGGGTGAGTCGGCCGGCACGCAAAGCTTCGACTCGGTGATGCAGGCCGACGtt                                                                                                             <  3:228848/149‑1 (MQ=255)                        gAAACTGGTGCGCACGGCCTTCGGTAACAACAACGTCGACACCTGCGCACGGGTATGCCATTCGCCCACCGGTTATGGCCGGAAGCAGACCCTGGGTGAGTCGGCCGGCACGCAAAGCTTCGACTCGGTGATGCAGGCCGACGTTGTGc                                                                                                         <  3:105895/149‑1 (MQ=255)                            cTGGTGCGCACGGCCTTCGGTAACAACAACGTCGACACCTGCGCACGGGTATGCCATTCGCCCACCGGTTATGGCCTGAAGCAGACCCTGGGTGAGTCGGCCGGCACGCAAAGCTTCGACTCGGTGATGCAGGCCGACGTTGTGCTGGt                                                                                                     <  3:204549/149‑1 (MQ=255)                                  cgcACGGCCTTCGGTAACAACAACGTCGACACCTGCGCACGGGTATGCCATTCGCCCACCGGTTATGGCCTGAAGCAGACCCTGGGTGAGTCGGCCGGCACGCAAAGCTTCGACTCGGTGATGCAGGCCGACGTTGTGCTGGTGATTg                                                                                                <  1:188370/148‑1 (MQ=255)                                  cgcACGGCATTCGTTAACAACATCGTCGACACCTGCGCACGGGTATGCCATTCGCCGACCGGTTATGGCCTGAAGCAGACCCTGGGTGAGTCGGCCGGCACGCAAAGCTTCGACTCGGTGATGCAGGCCGACGTTGTGCTGGTGATTg                                                                                                <  6:156624/148‑1 (MQ=255)                                                    aacaacGTCGACACCTGCGCACGGGTATGCCATTCGCCCACCGGTTATGGCCTGAAGCAGACCCTGGGTGAGTCGGCCGGCACGCAAAGCTTCGACTCGGTGATGCAGGCCGACGTTGTGCTGGTGATTGGCGCCAACCCCACCGAt                                                                               >  7:284722/1‑147 (MQ=255)                                                    aacaacGTCGACACCTGCGCACGGGTATGCCATTCGCCCACCGGTTATGGCCTGAAGCAGACCCTGGGTGAGTCGGCCGGCACGCAAAGCTTCGACTCGGTGATGCAGGCCGACGTTGTGCTGGTGATTGGCGCCAACCCCACCGAt                                                                               <  8:284722/147‑1 (MQ=255)                                                    aacaacGTCGACACCTGCGCACGGGTATGCCATTCGCCCACCGGTTATGGCCTGAAGCAGACCCTGGGTGAGTCGGCCGGCACGCAAAGCTTCGACTCGGTGATGCAGGCCGACGTTGTGCTGGTGATTGGCGCCAACCCCACCGATgc                                                                             <  5:81790/149‑1 (MQ=255)                                                    aacaacGTCGACACCTGCGCACGGGTATGCCATTCGCCCACCGGTTATGGCCTGAAGCAGACCCTGGGTGAGTCGGCCGGCACGCAAAGCGTCGACTCGGTGATGCAGGCCGACGTTGTGCTGGTGATTGGCGCCAACCCCACCGATgc                                                                             >  8:117997/1‑149 (MQ=255)                                                              acacCTGCGCACGGGTATGCCATTCGCCCACCGGTTATGGCCTGAAGCAGACCCTGGGTGAGTCGGCCGGCACGCAAAGCTTCGACTCGGTGATGCAGGCCGACGTTGTGCTGGTGATTGGCGCCAACCCCACCGATGCGCACCCGgtg                                                                   >  2:189319/1‑149 (MQ=255)                                                                acCTGCGCACGGGTATGCCATTCGCCCACCGGTTATGGCCTGAAGCAGCCCCTGGGTGAGTCGGCCGGCACGCAAAGCTTCGACTCGGTGATGCAGGCCGACGTTGTGCTGGTGATTGGCGCCAACCCCACCGATGCGCACCCGGTGtt                                                                 >  3:48347/1‑149 (MQ=255)                                                                      gcACGGGTATGCCATTCGCCCACCGGTTATGGCCTGAAGCAGACCCTGGGTGAGTCGGCCGGCACGCAAAGCTTCGACTCGGTGATGCAGGCCGACGTTGTGCTGGTGATTGGCGCCAACCCCACCGATGCGCACCCGGTGTTCGGCTc                                                           >  6:228273/1‑149 (MQ=255)                                                                        aCGGGTATGCCATTCGCCCACCGGTTATGGCCTGAAGCAGACCCTGGGTGAGTCGGCCGGCACGCAAAGCTTCGACTCGGTGATGCAGGCCGACGTTGTGCTGGTGATTGGCGCCAACCCCACCGATGCGCACCCGGTGTTCGGCTCg                                                          >  2:112311/1‑148 (MQ=255)                                                                           ggTATGGCATTCGGCCACCGGTTATGGCGTGAAGCAGTCCCTTGGTGAGTCGGGCGGCACGAAAAGCTTCGACTCGGTGATGCAGGCCGACGTTGTGCTGGTGATTGGCGCCAACCCCACCGATGCGCACCCGGTGTTCGGCTCGCaa                                                       <  1:109960/148‑1 (MQ=255)                                                                            gTATGCCATTCGCCCACCGGTTATGGCCTGAAGCAGACCCTGGGTGAGTCGGCCGGCACGCAAAGCTTCGACTCGGTGATGCAGGCCGACGTTGTGCTGGTGATTGGCGCCAACCCCACCGATGCGCACCCg                                                                      <  3:102734/132‑1 (MQ=255)                                                                            gTATGCCATTCGCCCACCGGTTATGGCCTGAAGCAGACCCTGGGTGAGTCGGCCGGCACGCAAAGCTTCGACTCGGTGATGCAGGCCGACGTTGTGCTGGTGATTGGCGCCAACCCCACCGATGCGCACCCg                                                                      >  4:102734/1‑132 (MQ=255)                                                                                 ccATTCGCCCACCGGTTATGGCCTGAAGCAGACCCTGGGTGAGTCGGCCGGCACGCAAAGCTTCGACTCGGTGATGCAGGCCGACGTTGTGCTGGTGATTGGCGCCAACCCCACCGATGCGCACCCGGTGTTCGGCTCGCAACTCAAgc                                                <  5:228273/149‑1 (MQ=255)                                                                                         ccACCGGTTATGGCCTGAAGCAGACCCTGGGTGAGTCGGCCGGCACGCAAAGCTTCGACTCGGTGATGCAGGCCGACGTTGTGCTGGTGATTGGCGCCAACCCCACCGATGCGCACCCGGTGTTCGGCTCGCAACTCAAgc                                                >  6:51831/1‑141 (MQ=255)                                                                                         ccACCGGTTATGGCCTGAAGCAGACCCTGGGTGAGTCGGCCGGCACGCAAAGCTTCGACTCGGTGATGCAGGCCGACGTTGTGCTGGTGATTGGCGCCAACCCCACCGATGCGCACCCGGTGTTCGGCTCGCAACTCAAgc                                                <  5:51831/141‑1 (MQ=255)                                                                                         ccACCGGTTATGGCCTGAAGCAGACCCTGGGTGAGTCGGCCGGCACGCAAAGCTTCGACTCGGTGATGCAGGCCGACGTTGTGCTGGTGATTGGCGCCAACCCCACCGATGCGCACCCGGTGTTCGGCTCGCAACTCAAGCGCCGCCTg                                        >  1:228210/1‑149 (MQ=255)                                                                                           aCCGGTTATGGCCTGAAGCAGACCCTGGGTGAGTCGGCCGGCACGGAAAGCTTCGACTCGGTGATGCAGGCCGACGTTGTGCTGGTGATTGgc                                                                                              >  1:222989/1‑93 (MQ=255)                                                                                           aCCGGTTATGGCCTGAAGCAGACCCTGGGTGAGTCGGCCGGCACGCAAAGCTTCGACTCGGTGATGCAGGCCGACGTTGTGCTGGTGATTGgc                                                                                              <  2:222989/93‑1 (MQ=255)                                                                                                ttATGGCCTGAAGCAGACCCTGGGTGAGTCGGCCGGCACGCAAAGCTTCGACTCGGTGATGCAGGCCGACGTTGTGCTGGTGATTGGCGCCAACCCCACCGATGCGCACCCGGTGTTCGGCTCGCAACTCAAGCGCCGCCTGCGCCAAg                                 <  1:189319/149‑1 (MQ=255)                                                                                                 tATGGCCTGAAGCAGACCCTGGGTGAGTCGGCCGGCACGCAAAGCTTCGACTCGGTGATGCAGGCCGACGTTGTGCTGGTGATTGGCGCCAACCCCACCGATGCGCACCCGGTGTTCGGc                                                             <  6:314612/120‑1 (MQ=255)                                                                                                   tGGCCTGAAGCAGACCCTGGGTGAGTCGGCCGGCACGCAAAGCTTCGACTCGGTGATGCAGGCCGACGTTGTGCTGGTGATTGGCGCCAACCCCACCGATGCGCACCCGGTGTTCGGCTCGCAACTCAAGCGCCGCCTGCGCCAAggg                               <  7:167550/148‑1 (MQ=255)                                                                                                      ccTGAAGCAGACCCTGGGTGAGTCGGCCGGCACGCAAAGCTTCGACTCGGTGATGCAGGCCGACGTTGTGCTGGTGATTGGCGCCAACCCCACCGATGCGCACCCGGTGTTCGGCTCGCAACTCAAGCGCCGCCTGCGCCAAGGGgcgc                           >  6:29225/1‑149 (MQ=255)                                                                                                      ccTGAAGCAGACCCTGGGTGAGTCGGCCGGCACGCAAAGCTTCGACTCGGTGATGCAGGCCGACGTTGTGCTGGTGATTGGCGCCAACCCCACCGATGCGCACCCGGTGTTCGGCTCGCAACTCAAGCGCCGCCTGCGCCAAGGGgcgc                           >  1:75141/1‑149 (MQ=255)                                                                                                            gCAGACCCTGGGTGAGTCGGCCGGCACGCAAAGCTTCGACTCGGTGATGCAGGCCGACGTTGTGCTGGTGATTGGCGCCAACCCCACCGATGCGCACCCGGTGTTCGGCTCGCAACTCAAGCGCCGCCTGCGCCAAGGGGCGCGGCtga                     >  1:156766/1‑149 (MQ=255)                                                                                                                aCCCTGGGTGAGTCGGCCGGCACGCAAAGCTTCGACTCGGTGATGCAGGCCGACGTTGTGCTGGTGATTGGCGCCAACCCCACCGATGCGCACCCGGTGTTCGGCTCGCAACTCAAGCGCCGCCTGCGCCAAGGGGCGCGGCtgatcgt                 >  5:197031/1‑149 (MQ=255)                                                                                                                aCCCTGGGTGAGTCGGCCGGCACGCAAAGCTTCGACTCGGTGATGCAGGCCGACGTTGTGCTGGTGATTGGCGCCAACCCCACCGATGCGCACCCGGTGTTCGGCTCGCAACTCAAGCGCCGCCTGCGCCAAGGGGCGCGGCtgatcgt                 >  7:159571/1‑149 (MQ=255)                                                                                                                  ccTGGGTGAGTCGGCCGGCACGCAAAGCTTCGACTCGGTGATGCAGGCCGACGTTGTGCTGGTGATTGGCGCCAACCCCACCGATGCGCACCCGGTGTTCGGCTCGCAACTCAAGCGCCGCCTGCGCCAAGGGGCGCGGCtgatcgtga               >  6:192476/1‑149 (MQ=255)                                                                                                                     gggTGAGTCGGCCGGCACGCAAAGCTTCGACTCGGTGATGCAGGCCGACGTTGTGCTGGTGATTGGCGCCAACCCCACCGATGCGCACCCGGTGTTCGGCTCGCAACTCAAGCGCCGCCTGCGCCAAGGGGCGCGGCtgatcg                  >  6:14788/1‑143 (MQ=255)                                                                                                                     gggTGAGTCGGCCGGCACGCAAAGCTTCGACTCGGTGATGCAGGCCGACGTTGTGCTGGTGATTGGCGCCAACCCCACCGATGCGCACCCGGTGTTCGGCTCGCAACTCAAGCGCCGCCTGCGCCAAGGGGCGCGGCtgatcg                  <  5:14788/143‑1 (MQ=255)                                                                                                                      ggTGAGTCGGCCGGCACGCAAAGCTTCGACTCGGTGATGCAGGCCGACGTTGTGCTGGTGATTGGCGCCAACCCCACCGATGCGCACCCGGTGTTCGGCTCGCAACTCAAGCGCCGCCTGCGCCAAGGGGCGCGGCTGATCGTGATCGa           <  2:302571/149‑1 (MQ=255)                                                                                                                       gTGAGTCGGCCGGCACGCAAAGCTTCGACTCGGTGATGCAGGCCGACGTTGTGCTGGTGATTGGCGCCAACCCCACCGATGCGCACCCGGTGTTCgg                                                              >  6:14837/1‑97 (MQ=255)                                                                                                                       gTGAGTCGGCCGGCACGCAAAGCTTCGACTCGGTGATGCAGGCCGACGTTGTGCTGGTGATTGGCGCCAACCCCACCGATGCGCACCCGGTGTTCgg                                                              <  5:14837/97‑1 (MQ=255)                                                                                                                         gAGTCGGCCGGCACGCAAAGCTTCGACTCGGTGATGCAggccgactcacccagggtctgcttcaggccataaccggtgggcgaatggcatacccgtgcgcaggtgtcgacgttgttgttaccgaaggccgtgcgcaccagtttctgcac        <  6:258270‑M2/149‑112 (MQ=255)                                                                                                                           gTCGGCCGGCACGCAAAGCTTCGACTCGGTGATGCAggccgactcacccagggtctgcttcaggccataaccggtgggcgaatggcatacccgtgcgcaggtgtcgacgttgttgttaccgaaggccgtgcgcaccagtttctgcacca      >  5:258270‑M2/1‑36 (MQ=255)                                                                                                                           gTCGGCCGGCACGCAAAGCTTCGACTCGGTGATGCAggccgactcacccagggtctgcttcaggccataaccgatgtgcgaatggcatacccgtgcgcaggaggcgacgttgttgttaccgaaggccgtgcgcaccagtttctgcac        <  2:250267‑M2/147‑112 (MQ=255)                                                                                                                           gTCGGCCGGCACGCAAAGCTTCGACTCGGTGATGCAGGCCGACGTTGTGCTGGTGATTGGCGCCAACCCCACCGATGCGCACCCGGTGTTCGGCTCGCAACTCAAGCGCCGCCTGCGCCAAGGGGCGCGGCTGATCGTGATCGACCCAc      <  6:197031/149‑1 (MQ=255)                                                                                                                              ggCCtgcatcaccgagtcgaagctttgcgtgccggccgactcacccagggtctgcttcaggccataaccggtgggcgaatggcatacccgtgcgcaggtgtcgacgttgttgttaccgaaggccgtgcgcaccagtttctgcaccagat   <  8:167550‑M1/149‑146 (MQ=255)                                                                                                                               gccggcACGCAAAGCTTCGACTCGGTGATGCAGGCCGACGTTGTGCTGGTGATTGGCGCCAACCCCACCGATGCGCACCCGGTGTTc                                                                >  2:108816/1‑87 (MQ=255)                                                                                                                               gCCtgcatcaccgagtcgaagctttgcgtgccggccgactcacccagggtctgcttcaggccataaccggtgggcgaatggcatacccgtgcgcaggtgtcgacgttgttgttaccgaaggccgtgcgcaccagtttctgcaccagata  <  2:188370‑M1/149‑147 (MQ=255)                                                                                                                                 |                                                                                                                                                   AACGAAGAAGCCTATCTGGTGCAGAAACTGGTGCGCACGGCCTTCGGTAACAACAACGTCGACACCTGCGCACGGGTATGCCATTCGCCCACCGGTTATGGCCTGAAGCAGACCCTGGGTGAGTCGGCCGGCACGCAAAGCTTCGACTCGGTGATGCAGGCCGACGTTGTGCTGGTGATTGGCGCCAACCCCACCGATGCGCACCCGGTGTTCGGCTCGCAACTCAAGCGCCGCCTGCGCCAAGGGGCGCGGCTGATCGTGATCGACCCACGGCG  >  NC_002947/2491631‑2491905

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.