New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2491759	42 (0.850)	3 (0.060)	3/242	NT	6.5%	coding (1182/2883 nt)	PP_2185	formate dehydrogenase subunit alpha
	?	NC_002947	= 2491788	47 (1.010)					coding (1211/2883 nt)	PP_2185	formate dehydrogenase subunit alpha

CCTATCTGGTGCAGAAACTGGTGCGCACGGCCTTCGGTAACAACAACGTCGACACCTGCGCACGGGTATGCCATTCGCCCACCGGTTATGGCCTGAAGCAGACCCTGGGTGAGTCGGCCGGCACGCAAAGCTTCGACTCGGTGATGCAGGCCGACGTTGTGCTGGTGATT‑GGCGCCAACCCCACCGATGCGCACCCGGTGTTCGGCTCGCAACTCAAGCGCCGCCTGCGCCAAGGGGCGCGGCTGATCGTGATCGACCCACGGCGTATCGACCTGGTCGACTCGCCGCAC  >  NC_002947/2491641‑2491930                                                                                                                                                    |                                                                                                                                                ccTATCTGGTGCAGCACCTGGTGCGCACGGCGTGGGGTAACAACAACGGCGACACCTGCGCGCGGGGATGCCATACGCCCACCGGTTATGGGCGGAAGCGGACCCTGGGTGAGTCGGCCGGGACGCGCAGGTTCGAGGCGGTGAGGCAg                                                                                                                                                >  4:228848/1‑149 (MQ=255)   tATCTGGTGCAGAAACTGGTGCGCACGGCCTTCGGTAACAACAACGTCGACACCTGCGCACGGGTATGCCATTCGCCCACCGGTTATGGCCTGAAGCAGACCCTGGGTGAGTCGGCCGGCACGCAAAGCTTCGACTCGGTGATGCAggc                                                                                                                                              <  2:188370‑M2/149‑4 (MQ=255)    aTCTGGTGCAGAAACTGGTGCGCACGGCCTTCGGTAACAACAACGTCGACACCTGCGCACGGGTATGCCATTCGCCCACCGGTTATGGCCTGAAGCAGACCCTGGGTGAGTCGGCCGGCACGCAAAGCTTCGACTCGGTGATGCAggcc                                                                                                                                             <  8:167550‑M2/149‑5 (MQ=255)          tGCAGAAACTGGTGCGCACGGCCTTCGGTAACAACAACGTCGACACCTGCGCACGGGTATGCCATTCGCCCACCGGTTATGGCCTGAAGCAGACCCTGGGTGAGTCGGCCGGCACGCAAAGCTTCGACTCGGTGATGCAGGCCGACGtt                                                                                                                                       <  5:269507/149‑1 (MQ=255)          tGCAGAAACTGGTGCGCACGGCCTTCGGTAACAACAACGTCGACACCTGCGCACGGGTATGCCATACGCCCACCGGTTATGGCCTGAAGCAGACCCTGGGTGAGTCGGCCGGCACGCAAAGCTTCGACTCGGTGATGCAGGCCGACGtt                                                                                                                                       <  3:228848/149‑1 (MQ=255)              gAAACTGGTGCGCACGGCCTTCGGTAACAACAACGTCGACACCTGCGCACGGGTATGCCATTCGCCCACCGGTTATGGCCGGAAGCAGACCCTGGGTGAGTCGGCCGGCACGCAAAGCTTCGACTCGGTGATGCAGGCCGACGTTGTGc                                                                                                                                   <  3:105895/149‑1 (MQ=255)                  cTGGTGCGCACGGCCTTCGGTAACAACAACGTCGACACCTGCGCACGGGTATGCCATTCGCCCACCGGTTATGGCCTGAAGCAGACCCTGGGTGAGTCGGCCGGCACGCAAAGCTTCGACTCGGTGATGCAGGCCGACGTTGTGCTGGt                                                                                                                               <  3:204549/149‑1 (MQ=255)                        cgcACGGCCTTCGGTAACAACAACGTCGACACCTGCGCACGGGTATGCCATTCGCCCACCGGTTATGGCCTGAAGCAGACCCTGGGTGAGTCGGCCGGCACGCAAAGCTTCGACTCGGTGATGCAGGCCGACGTTGTGCTGGTGATT‑g                                                                                                                         <  1:188370/148‑1 (MQ=255)                        cgcACGGCATTCGTTAACAACATCGTCGACACCTGCGCACGGGTATGCCATTCGCCGACCGGTTATGGCCTGAAGCAGACCCTGGGTGAGTCGGCCGGCACGCAAAGCTTCGACTCGGTGATGCAGGCCGACGTTGTGCTGGTGATT‑g                                                                                                                         <  6:156624/148‑1 (MQ=255)                                          aacaacGTCGACACCTGCGCACGGGTATGCCATTCGCCCACCGGTTATGGCCTGAAGCAGACCCTGGGTGAGTCGGCCGGCACGCAAAGCTTCGACTCGGTGATGCAGGCCGACGTTGTGCTGGTGATT‑GGCGCCAACCCCACCGAt                                                                                                        <  8:284722/147‑1 (MQ=255)                                          aacaacGTCGACACCTGCGCACGGGTATGCCATTCGCCCACCGGTTATGGCCTGAAGCAGACCCTGGGTGAGTCGGCCGGCACGCAAAGCTTCGACTCGGTGATGCAGGCCGACGTTGTGCTGGTGATT‑GGCGCCAACCCCACCGAt                                                                                                        >  7:284722/1‑147 (MQ=255)                                          aacaacGTCGACACCTGCGCACGGGTATGCCATTCGCCCACCGGTTATGGCCTGAAGCAGACCCTGGGTGAGTCGGCCGGCACGCAAAGCTTCGACTCGGTGATGCAGGCCGACGTTGTGCTGGTGATT‑GGCGCCAACCCCACCGATgc                                                                                                      <  5:81790/149‑1 (MQ=255)                                          aacaacGTCGACACCTGCGCACGGGTATGCCATTCGCCCACCGGTTATGGCCTGAAGCAGACCCTGGGTGAGTCGGCCGGCACGCAAAGCGTCGACTCGGTGATGCAGGCCGACGTTGTGCTGGTGATT‑GGCGCCAACCCCACCGATgc                                                                                                      >  8:117997/1‑149 (MQ=255)                                                    acacCTGCGCACGGGTATGCCATTCGCCCACCGGTTATGGCCTGAAGCAGACCCTGGGTGAGTCGGCCGGCACGCAAAGCTTCGACTCGGTGATGCAGGCCGACGTTGTGCTGGTGATT‑GGCGCCAACCCCACCGATGCGCACCCGgtg                                                                                            >  2:189319/1‑149 (MQ=255)                                                      acCTGCGCACGGGTATGCCATTCGCCCACCGGTTATGGCCTGAAGCAGCCCCTGGGTGAGTCGGCCGGCACGCAAAGCTTCGACTCGGTGATGCAGGCCGACGTTGTGCTGGTGATT‑GGCGCCAACCCCACCGATGCGCACCCGGTGtt                                                                                          >  3:48347/1‑149 (MQ=255)                                                            gcACGGGTATGCCATTCGCCCACCGGTTATGGCCTGAAGCAGACCCTGGGTGAGTCGGCCGGCACGCAAAGCTTCGACTCGGTGATGCAGGCCGACGTTGTGCTGGTGATT‑GGCGCCAACCCCACCGATGCGCACCCGGTGTTCGGCTc                                                                                    >  6:228273/1‑149 (MQ=255)                                                              aCGGGTATGCCATTCGCCCACCGGTTATGGCCTGAAGCAGACCCTGGGTGAGTCGGCCGGCACGCAAAGCTTCGACTCGGTGATGCAGGCCGACGTTGTGCTGGTGATT‑GGCGCCAACCCCACCGATGCGCACCCGGTGTTCGGCTCg                                                                                   >  2:112311/1‑148 (MQ=255)                                                                 ggTATGGCATTCGGCCACCGGTTATGGCGTGAAGCAGTCCCTTGGTGAGTCGGGCGGCACGAAAAGCTTCGACTCGGTGATGCAGGCCGACGTTGTGCTGGTGATT‑GGCGCCAACCCCACCGATGCGCACCCGGTGTTCGGCTCGCaa                                                                                <  1:109960/148‑1 (MQ=255)                                                                  gTATGCCATTCGCCCACCGGTTATGGCCTGAAGCAGACCCTGGGTGAGTCGGCCGGCACGCAAAGCTTCGACTCGGTGATGCAGGCCGACGTTGTGCTGGTGATT‑GGCGCCAACCCCACCGATGCGCACCCg                                                                                               <  3:102734/132‑1 (MQ=255)                                                                  gTATGCCATTCGCCCACCGGTTATGGCCTGAAGCAGACCCTGGGTGAGTCGGCCGGCACGCAAAGCTTCGACTCGGTGATGCAGGCCGACGTTGTGCTGGTGATT‑GGCGCCAACCCCACCGATGCGCACCCg                                                                                               >  4:102734/1‑132 (MQ=255)                                                                       ccATTCGCCCACCGGTTATGGCCTGAAGCAGACCCTGGGTGAGTCGGCCGGCACGCAAAGCTTCGACTCGGTGATGCAGGCCGACGTTGTGCTGGTGATT‑GGCGCCAACCCCACCGATGCGCACCCGGTGTTCGGCTCGCAACTCAAgc                                                                         <  5:228273/149‑1 (MQ=255)                                                                               ccACCGGTTATGGCCTGAAGCAGACCCTGGGTGAGTCGGCCGGCACGCAAAGCTTCGACTCGGTGATGCAGGCCGACGTTGTGCTGGTGATT‑GGCGCCAACCCCACCGATGCGCACCCGGTGTTCGGCTCGCAACTCAAgc                                                                         >  6:51831/1‑141 (MQ=255)                                                                               ccACCGGTTATGGCCTGAAGCAGACCCTGGGTGAGTCGGCCGGCACGCAAAGCTTCGACTCGGTGATGCAGGCCGACGTTGTGCTGGTGATT‑GGCGCCAACCCCACCGATGCGCACCCGGTGTTCGGCTCGCAACTCAAgc                                                                         <  5:51831/141‑1 (MQ=255)                                                                               ccACCGGTTATGGCCTGAAGCAGACCCTGGGTGAGTCGGCCGGCACGCAAAGCTTCGACTCGGTGATGCAGGCCGACGTTGTGCTGGTGATT‑GGCGCCAACCCCACCGATGCGCACCCGGTGTTCGGCTCGCAACTCAAGCGCCGCCTg                                                                 >  1:228210/1‑149 (MQ=255)                                                                                 aCCGGTTATGGCCTGAAGCAGACCCTGGGTGAGTCGGCCGGCACGGAAAGCTTCGACTCGGTGATGCAGGCCGACGTTGTGCTGGTGATT‑Ggc                                                                                                                       >  1:222989/1‑93 (MQ=255)                                                                                 aCCGGTTATGGCCTGAAGCAGACCCTGGGTGAGTCGGCCGGCACGCAAAGCTTCGACTCGGTGATGCAGGCCGACGTTGTGCTGGTGATT‑Ggc                                                                                                                       <  2:222989/93‑1 (MQ=255)                                                                                      ttATGGCCTGAAGCAGACCCTGGGTGAGTCGGCCGGCACGCAAAGCTTCGACTCGGTGATGCAGGCCGACGTTGTGCTGGTGATT‑GGCGCCAACCCCACCGATGCGCACCCGGTGTTCGGCTCGCAACTCAAGCGCCGCCTGCGCCAAg                                                          <  1:189319/149‑1 (MQ=255)                                                                                       tATGGCCTGAAGCAGACCCTGGGTGAGTCGGCCGGCACGCAAAGCTTCGACTCGGTGATGCAGGCCGACGTTGTGCTGGTGATT‑GGCGCCAACCCCACCGATGCGCACCCGGTGTTCGGc                                                                                      <  6:314612/120‑1 (MQ=255)                                                                                         tGGCCTGAAGCAGACCCTGGGTGAGTCGGCCGGCACGCAAAGCTTCGACTCGGTGATGCAGGCCGACGTTGTGCTGGTGATT‑GGCGCCAACCCCACCGATGCGCACCCGGTGTTCGGCTCGCAACTCAAGCGCCGCCTGCGCCAAggg                                                        <  7:167550/148‑1 (MQ=255)                                                                                            ccTGAAGCAGACCCTGGGTGAGTCGGCCGGCACGCAAAGCTTCGACTCGGTGATGCAGGCCGACGTTGTGCTGGTGATT‑GGCGCCAACCCCACCGATGCGCACCCGGTGTTCGGCTCGCAACTCAAGCGCCGCCTGCGCCAAGGGgcgc                                                    >  1:75141/1‑149 (MQ=255)                                                                                            ccTGAAGCAGACCCTGGGTGAGTCGGCCGGCACGCAAAGCTTCGACTCGGTGATGCAGGCCGACGTTGTGCTGGTGATT‑GGCGCCAACCCCACCGATGCGCACCCGGTGTTCGGCTCGCAACTCAAGCGCCGCCTGCGCCAAGGGgcgc                                                    >  6:29225/1‑149 (MQ=255)                                                                                                  gCAGACCCTGGGTGAGTCGGCCGGCACGCAAAGCTTCGACTCGGTGATGCAGGCCGACGTTGTGCTGGTGATT‑GGCGCCAACCCCACCGATGCGCACCCGGTGTTCGGCTCGCAACTCAAGCGCCGCCTGCGCCAAGGGGCGCGGCtga                                              >  1:156766/1‑149 (MQ=255)                                                                                                      aCCCTGGGTGAGTCGGCCGGCACGCAAAGCTTCGACTCGGTGATGCAGGCCGACGTTGTGCTGGTGATT‑GGCGCCAACCCCACCGATGCGCACCCGGTGTTCGGCTCGCAACTCAAGCGCCGCCTGCGCCAAGGGGCGCGGCtgatcgt                                          >  5:197031/1‑149 (MQ=255)                                                                                                      aCCCTGGGTGAGTCGGCCGGCACGCAAAGCTTCGACTCGGTGATGCAGGCCGACGTTGTGCTGGTGATT‑GGCGCCAACCCCACCGATGCGCACCCGGTGTTCGGCTCGCAACTCAAGCGCCGCCTGCGCCAAGGGGCGCGGCtgatcgt                                          >  7:159571/1‑149 (MQ=255)                                                                                                        ccTGGGTGAGTCGGCCGGCACGCAAAGCTTCGACTCGGTGATGCAGGCCGACGTTGTGCTGGTGATT‑GGCGCCAACCCCACCGATGCGCACCCGGTGTTCGGCTCGCAACTCAAGCGCCGCCTGCGCCAAGGGGCGCGGCtgatcgtga                                        >  6:192476/1‑149 (MQ=255)                                                                                                           gggTGAGTCGGCCGGCACGCAAAGCTTCGACTCGGTGATGCAGGCCGACGTTGTGCTGGTGATT‑GGCGCCAACCCCACCGATGCGCACCCGGTGTTCGGCTCGCAACTCAAGCGCCGCCTGCGCCAAGGGGCGCGGCtgatcg                                           >  6:14788/1‑143 (MQ=255)                                                                                                           gggTGAGTCGGCCGGCACGCAAAGCTTCGACTCGGTGATGCAGGCCGACGTTGTGCTGGTGATT‑GGCGCCAACCCCACCGATGCGCACCCGGTGTTCGGCTCGCAACTCAAGCGCCGCCTGCGCCAAGGGGCGCGGCtgatcg                                           <  5:14788/143‑1 (MQ=255)                                                                                                            ggTGAGTCGGCCGGCACGCAAAGCTTCGACTCGGTGATGCAGGCCGACGTTGTGCTGGTGATT‑GGCGCCAACCCCACCGATGCGCACCCGGTGTTCGGCTCGCAACTCAAGCGCCGCCTGCGCCAAGGGGCGCGGCTGATCGTGATCGa                                    <  2:302571/149‑1 (MQ=255)                                                                                                             gTGAGTCGGCCGGCACGCAAAGCTTCGACTCGGTGATGCAGGCCGACGTTGTGCTGGTGATT‑GGCGCCAACCCCACCGATGCGCACCCGGTGTTCgg                                                                                       >  6:14837/1‑97 (MQ=255)                                                                                                             gTGAGTCGGCCGGCACGCAAAGCTTCGACTCGGTGATGCAGGCCGACGTTGTGCTGGTGATT‑GGCGCCAACCCCACCGATGCGCACCCGGTGTTCgg                                                                                       <  5:14837/97‑1 (MQ=255)                                                                                                               gAGTCGGCCGGCACGCAAAGCTTCGACTCGGTGATGCAggccgactcacccagggtctgcttcaggccataaccggtgggcgaatggcatacccgtgcgcaggtgtcgacgttgttgttaccgaaggccgtgcgcaccagtttctgcac                                  <  6:258270‑M2/149‑112 (MQ=255)                                                                                                                 gTCGGCCGGCACGCAAAGCTTCGACTCGGTGATGCAggccgactcacccagggtctgcttcaggccataaccggtgggcgaatggcatacccgtgcgcaggtgtcgacgttgttgttaccgaaggccgtgcgcaccagtttctgcacca                                >  5:258270‑M2/1‑36 (MQ=255)                                                                                                                 gTCGGCCGGCACGCAAAGCTTCGACTCGGTGATGCAggccgactcacccagggtctgcttcaggccataaccgatgtgcgaatggcatacccgtgcgcaggaggcgacgttgttgttaccgaaggccgtgcgcaccagtttctgcac                                  <  2:250267‑M2/147‑112 (MQ=255)                                                                                                                 gTCGGCCGGCACGCAAAGCTTCGACTCGGTGATGCAGGCCGACGTTGTGCTGGTGATT‑GGCGCCAACCCCACCGATGCGCACCCGGTGTTCGGCTCGCAACTCAAGCGCCGCCTGCGCCAAGGGGCGCGGCTGATCGTGATCGACCCAc                               <  6:197031/149‑1 (MQ=255)                                                                                                                     gccggcACGCAAAGCTTCGACTCGGTGATGCAGGCCGACGTTGTGCTGGTGATT‑GGCGCCAACCCCACCGATGCGCACCCGGTGTTc                                                                                         >  2:108816/1‑87 (MQ=255)                                                                                                                            cGCAAAGCTTCGACTCGGTGATGCAGGCCGACGTTGTGCTGGTGATT‑GGCGCCAACCCCACCGATGCGCACCCGGTGTTCGGCTCGCAACTCAAGCGCCGCCTGCGCCAAGGGGCGCGGCTGATCGTGATCGACCCACGGCGTATCGAc                    <  1:112311/149‑1 (MQ=255)                                                                                                                             gCAAAGCTTCGACTCGGTGATGCAGGCCGACGTTGTGCTGGTGATT‑GGCGCCAACCCCACCGATGCGCACCCGGTGTTCGGCTCGCAACTCAAGCGCCGCCTGCGCCAAGGGGCGCGGCTGATCGTGATCGACCCACGGCGTa                         >  6:215385/1‑143 (MQ=255)                                                                                                                             gCAAAGCTTCGACTCGGTGATGCAGGCCGACGTTGTGCTGGTGATT‑GGCGCCAACCCCACCGATGCGCACCCGGTGTTCGGCTCGCAACTCAAGCGCCGCCTGCGCCAAGGGGCGCGGCTGATCGTGATCGACCCACGGCGTa                         <  5:215385/143‑1 (MQ=255)                                                                                                                               aaaGCTTCGACTCGGTGATGCAGGCCGACGTTGTGCTGGTGATT‑GGCGCCAACCCCACCGATGCGCACCCGGTGTTCGGCTCGCAACTCAAGCGCCGCCTGCGCCAAGGGGCGCGGCTGATCGTGATCGACCCACGGCGTATCGACCTg                 >  5:202392/1‑149 (MQ=255)                                                                                                                               aaaGCTTCGACTCGGTGATGCAGGCCGACGTTGTGCTGGTGATT‑GGCGCCAACCCCACCGATGCGCACCCGGTGTTCGGCTCGCAACTCAAGCGCCGCCTGCGCCAAGGGGCGCGGCTGATCGTGATCGACCCACGGCGTATCGACCTg                 <  5:192476/149‑1 (MQ=255)                                                                                                                                 aGCTTCGACTCGGTGATGCAGGCCGACGTTGTGCTGGTGATT‑GGCGCCAACCCCACCGATGCGCACCCGGTGTTCGGCTCGCAACTCAAGCGCCGCCTGCGCCAAGGGGCGCGGCtgatcgtg                                         <  7:90803/123‑1 (MQ=255)                                                                                                                                 aGCTTCGACTCGGTGATGCAGGCCGACGTTGTGCTGGTGATT‑GGCGCCAACCCCACCGATGCGCACCCGGTGTTCGGCTCGCAACTCAAGCGCCGCCTGCGCCAAGGGGCGCGGCtgatcgtg                                         >  8:90803/1‑123 (MQ=255)                                                                                                                                      cGACTCGGTGATGCAGGCCGACGTTGTGCTGGTGATT‑GGCGCCAACCCCACCGATGCGCACCCGGTGTTCGGCTCGCAACTCAAGCGCCGCCTGCGCCAAGGGGCGCGGCTGATCGTGATCGACCCACGGCGTATCGACCTGGTCGa            <  2:156766/147‑1 (MQ=255)                                                                                                                                            ggTGATGCAGGCCGACGTTGTGCTGGTGATTGGGCGCAAACCCCACCGATGCGCACCCGGTGTTCGGCTCGCAAATCAAGCGCCGCATGCGCCAAGGGGCGAGGCTGATCGTGATCGACCCACGGCGTATCGACCTGGTCGCATcgccg     >  1:202837/1‑149 (MQ=255)                                                                                                                                              tGATGCAGGCCGACGTTGTGCTGGTGATT‑GGCGCCAACCCCACCGATGCGCACCCGGTGTTCGGCTCGCAACTCAAGCGCCGCCTGCGCCAAGGGGCGCGGCTGATCGTGATCGACCCACGGCGTATCGACCTGGTCGACTCGCCGCAc  <  8:159571/149‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                                CCTATCTGGTGCAGAAACTGGTGCGCACGGCCTTCGGTAACAACAACGTCGACACCTGCGCACGGGTATGCCATTCGCCCACCGGTTATGGCCTGAAGCAGACCCTGGGTGAGTCGGCCGGCACGCAAAGCTTCGACTCGGTGATGCAGGCCGACGTTGTGCTGGTGATT‑GGCGCCAACCCCACCGATGCGCACCCGGTGTTCGGCTCGCAACTCAAGCGCCGCCTGCGCCAAGGGGCGCGGCTGATCGTGATCGACCCACGGCGTATCGACCTGGTCGACTCGCCGCAC  >  NC_002947/2491641‑2491930

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.