New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2558200	41 (0.830)	4 (0.080)	4/246	NT	9.2%	coding (460/2235 nt)	fepA	ferric enterobactin transport system outer membrane subunit
	?	NC_002947	= 2558235	40 (0.840)					coding (495/2235 nt)	fepA	ferric enterobactin transport system outer membrane subunit

AAACAACCGGCAGATCGACCTGCGCGGCATGGGCCCGGAAAACACCTTGATCCTCATCGACGGCAAGCCATCCAGC‑GCGCGCAACGCCGTACGCTATGGCTGGAACGGTGACCGTGATACTCGGGGTGAA‑ACCAACTGGGTGCCGGCCGAAGCGGTCGAGCGCATCGAAATCCTGCGTGGCCCGGCCGCCGCACGCTATGGCTCTGGCGCCATGGGCGGGGTGGTCAACATCATCACCAAGCGCCCTTCCGACGAGCTGAAAGGCAGCGTCAGCCTGTACACGCAGCTGCCGGA  >  NC_002947/2558055‑2558348                                                                                                                                                    |                                                                                                                                                     aaaCAACCGGCAGATCGACCTGCGCGGCATGGGCCCGGAAAACACCTTGATCCTCATCGACGGCAAGCCATCCAGC‑GCGCGCAACGCCGTACGCTATGGCTGGAACGGTGACCGTGATACTCGGGGTGAA‑ACCAACTGGGTgccggcc                                                                                                                                                    >  6:256684/1‑148 (MQ=255)         ggCAGATCGACCTGCGCGGCATGGGCCCGGAAAACACCTTGATCCTCATCGACGGCAAGCCATCCAGC‑GCGCGCAACGCCGTACGCTATGGCTGGAACGGTGACCGTGATACTCGGGGTGAA‑ACCAACTGGGTGCCGGCCGAAGCGGTc                                                                                                                                           <  4:221138/149‑1 (MQ=255)          gCAGATCGACCTGCGCCGCATGGGCCCGGAAAACACCTTGATCCTCATCGACGGCAAGCCATCCAGC‑GCGCGCAACGCCGTACGCTATTGCTGGAACGGTGACCGTGATACTCGGCGAGAA‑ACCAACTGGGTGGCGGCCGaacaggacg                                                                                                                                          >  8:144260/1‑142 (MQ=255)             gATCGACCTGCGCGGCATGGGCCCGGAAAACACCTTGATCCTCATCGACGGCAAGCCATCCAGC‑GCGCGCAACGCCGTACGCTATGGCTGGAACGGTGACCGTGATACTCGGGGTGAA‑ACCAACTGGGTGCCGGCCGAAGCGGTCGAgc                                                                                                                                       <  5:192822/149‑1 (MQ=255)                cGACCTGCGCGGCATGGGCCCGGAAAACACCTTGATCCTCATCGACGGCAAGCCATCCAGC‑GCGCGCAACGCCGTACGCTATGGCTGGAACGGTGACCGTGATACTCGGGGTGAA‑ACCAACTGGGTGCCGGCCGAAGCGGTCGAGCGCa                                                                                                                                    >  8:110975/1‑149 (MQ=255)                   ccTGCGCGGCATGGGCCCGGAAAACACCTTGATCCTCATCGACGGCAAGCCATCCAGCGGAGCGCCACCCCGTACGCGATGGCTGGAACCGTGACCCTGATACTCGGGGTGAA‑ACCAACTGGGTTCCCGCCGAAGCGGTCCAGCCCATc                                                                                                                                  >  1:90607/1‑149 (MQ=255)                    cTGCGCGGCATGGGCCCGGAAAACACCTTGATCCTCATCGACGGCAAGCCATCCAGC‑GCGCGCAACGCCGTACGCTATGGCTGGAACGGTGACCGTGATACTCGGGGTGAA‑ACCAACTGGGTGCCGGgccacgcaggatttcgatgcgc                                                                                                                                >  6:103786‑M1/1‑127 (MQ=255)                       cgcgGCATGGGCCCGGAAAACACCTTGATCCTCATCGACGGCAAGCCATCCAGC‑GCGCGCAACGCCGTACGCTATGGCTGGAACGGTGACCGTGATACTCGGGGTGAA‑ACCAACTGGGTGCCGGCCGAAGCGGTCGAGCGCATCGAAAt                                                                                                                             >  2:82795/1‑149 (MQ=255)                          ggCATGGGCCCGGAAAACACCTTGATCCTCATCGACGGCAAGCCATCCAGC‑GCGCGCAACGCCGTACGCTATGGCTGGAACGGTGACCGTGATACTCGGGGTGAA‑ACCAACTGGGTGCCGGCCGAAGCGGTCGAGCGCATCGAAATCCt                                                                                                                          <  7:110975/149‑1 (MQ=255)                          ggCATGGGCCCGGAAAACACCTTGATCCTCATCGACGGCAAGCCATCCAGC‑GCGCGCAACGCCGTACGCTATGGCTGGAACGGTGACCGTGATACTCGGGGTGAA‑ACCAACTGGGTGCCGGCCGAAGCGGTCGAGCGCATCGAAATCCt                                                                                                                          <  5:256684/149‑1 (MQ=255)                                ggCCCGGAAAACACCTTGATCCTCATCGACGGCAAGCCATCCAGC‑GCGCGCAACGCCGTACGCTATGGCTGGAACGGTGACCGTGATACTCGGGGTGAA‑ACCAACTGGGTGCCGGCCGAAGCGGTCGAGCGCATCGAAATCCTGCGTgg                                                                                                                    <  7:211421/149‑1 (MQ=255)                                     ggAAAACACCTTGATCCTCATCGACGGCAAGCCATCCAGC‑GCGCGCAACGCCGTACGCTATGGCTGGAACGGTGACCGTGATACTCGGGGTGAACACCAACTGGGTGCCGGCCGAAGCGGTCGAGCGCATCGAAATCCTGCGTGGCccg                                                                                                                >  1:82795‑M2/1‑146 (MQ=255)                                         aaCACCTTGATCCTCATCGACGGCAAGCCATCCAGC‑GCGCGCAACGCCGTACGCTATGGCTGGAACGGTGACCGTGATACTCGGGGTGAA‑ACCAACTGGGTGCCGGCCGAAGCGGTCGAGCGCATCGAAATCCTGCGTGGCCCGgccgc                                                                                                           <  1:218288/149‑1 (MQ=255)                                           cacCTTTATCCTCATCGACGGCAACCCATCCCGC‑GCGCGCAACGCCGTACGCTATGGCTGTAACTGTGCCCGTGATACACGCGGTGAA‑ACCAACTTGGTGCCGGCCGCAGAGGTCGAGCGCATCGAAATCCTGCCTGCCCCGgccgccc                                                                                                         >  8:295718/1‑148 (MQ=255)                                           cacCTTGATCCTCATCGACGGCAAGCCATCCAGC‑GCGCGCAACGCCGTACGCTATGGCTGGAACGGTGACCGTGATACTCGGGGTGAA‑ACCAACTGGGTGCCGGgccacgcaggatttcgatgcgctcgaccgcttcggccggcaccca                                                                                                         <  5:103786‑M1/149‑46 (MQ=255)                                               ttGATCCTCATCGACGGCAAGCCATCCAGC‑GCGCGCAACGCCGTACGCTATGGCTGGAACGGTGACCGTGATACTCGGGGTGAA‑ACCAACTGGGTGCCGGCCGAAGCGGTCGAGCGCATCGAAATCCTGCGTGGCCCGGCCGCCGCACg                                                                                                     >  7:236332/1‑149 (MQ=255)                                                tGATCCTCATCGACGGCAAGCCATCCAGC‑GCGCGCAACGCCGTACGCTATGGCTGGAACGGTGACCGTGATACTCGGGGTGAA‑ACCAACTGGGTGCCGGCCGAAGCGGTCGAGCGCATCGAAATCCTGCGTGGCCCGGCCGCCGCACGc                                                                                                    >  5:107860/1‑149 (MQ=255)                                                     cTCATCGACGGCAAGCCATCCAGC‑GCGCGCAACGCCGTACGCTATGGCTGGAACGGTGACCGTGATACTCGGGGTGAA‑ACCAACTGGGTGCCGGCCGAAGCGGTCGAGCGCATCGAAATCCTGCGTGGCCCGGCCGCCGCACGCTATgg                                                                                               <  8:245202/149‑1 (MQ=255)                                                           gACGGCAAGCCATCCAGC‑GCGCGCAACGCCGTACGCTATGGCTGGAACGGTGACCGTGATACTCGGGGTGAA‑ACCAACTGGGTGCCGGCCGAAGCGGTCGAGCGCATCGAAATCCTGCGTGGCCCGGCCGCCGCACGCTATGGCTCTgg                                                                                         >  5:248139/1‑149 (MQ=255)                                                            aCGGCAAGCCATCCAGC‑GCGCGCAACGCCGTACGCTATGGCTGGAACGGTGACCGTGATACTCGGGGTGAA‑ACCAACTGGGTGCCGGCCGAAGCGGTCGAGCGCATCGAAATCCTGCGTGGCCCGGCCGCCGCACGCTATGGCTCTGgc                                                                                        <  6:107860/149‑1 (MQ=255)                                                              ggCAAGCCATCCAGC‑GCGCGCAACGCCGTACGCTATGGCTGGAACGGTGACCGTGATACTCGGGGTGAA‑ACCAACTGGGTGCCGGgccacgcaggatttcgatgcgctcgaccgcttcggccggcacccagtt                                                                                                      <  1:316153‑M1/133‑49 (MQ=255)                                                              ggCAAGCCATCCAGC‑GCGCGCAACGCCGTACGCTATGGCTGGAACGGTGACCGTGATACTCGGGGTGAA‑ACCAACTGGGTGCCGGgccacgcaggatttcgatgcgctcgaccgcttcggccggcacccagtt                                                                                                      >  2:316153‑M1/1‑85 (MQ=255)                                                                cAAGCCATCCAGC‑GCGCGCAACGCCGTACGCTATGGCTGGAACGGTGACCGTGATACTCGGGGTGAA‑ACCAACTGGGTGCCGGCCGAAGCGGTCGAGCGCATCGAAATCCTGCGTGGCCCGGCCGCCGCACGCTATGGCTCTGGCGCCa                                                                                    >  5:122381/1‑149 (MQ=255)                                                                  aGCCATCCAGC‑GCGCGCAACGCCGTACGCTATGGCTGGAACGGTGACCGTGATACTCGGGGTGAA‑ACCAACTGGGTGCCGGCCGAAGCGGTCGAGCGCATCGAAATCCTGCGTGGCCCGGCCGCCGCACGCTATGGCTCTGGCGCCATg                                                                                  >  8:200622/1‑149 (MQ=255)                                                                   gCCATCCAGC‑GCGCGCAACGCCGTACGCTATGGCTGGAACGGTGACCGTGATACTCGGGGTGAA‑ACCAACTGGGTGCCGGCCGAAGCGGTCGAGCGCATCGAAATCCTGCGTGGCCCGGCCGCCGCACGCTATGGCTCTGGCGCCATgg                                                                                 <  6:242621/149‑1 (MQ=255)                                                                     cATCCAGC‑GCGCGCAACGCCGTACCCTATGGCTGGAACGGTGACCGTCATACTCGGGGTGAA‑ACCAACTGGGTGCCGGCCGAAGCGGTCGAGCGCATCGAAATCCTGCGTCGCCCGGCCGCCGCACGCTATGGCTCTGGCGCCATGGGc                                                                               >  1:138272/1‑149 (MQ=255)                                                                               cgcgcAACGCCGTACGCTATGGCTGGAACGGGGAGCGTGATACTCGGGGTGAC‑ACCAACTGGGGGCCGGCCGAAGCGGTCGAGCGCATCGTACTCCTGCGTGGCCCGGCCGCCGCACGCTATGGCTCTGGCGCCATGGGCGGGGTGGTc                                                                      <  7:295718/149‑1 (MQ=255)                                                                                gcgcAACGCCGTACGCTATGGCTGGAACGGTGACCGTGATACTCGGGGTGAA‑ACCAACTGGGTGCCGGCCGAAGCGGTCGAGCGCATCGAAATCCTGCGTGGCCCGGCCGCCGCACGCTATGGCTCTGGCGCCATGGGCGGGGTGGTc                                                                      >  5:46799/1‑148 (MQ=255)                                                                                     aCGCCGTACGCTATGGCTGGAACGGTGACCGTGATACTCGGGGTGAA‑ACCAACTGGGTGCCGGCCGAAGCGGTCGAGCGCATCGAAATCCTGCGTGGCCCGGCCGCCGCACGCTATGGCTCTGGCGCCATGGGCGGGGTGGTCAAcatc                                                                <  8:236332/149‑1 (MQ=255)                                                                                             cGCTATGGCTGGAACGGTGACCGTGATACTCGGGGTGAA‑ACCAACTGGGTGCCGGCCGAAGCGGTCGAGCGCATCGAAATCCTGCGTGGCCCGGCCGCCGCACGCTATGGCTCTGGCGCCATgg                                                                                 >  4:112131/1‑124 (MQ=255)                                                                                                 aTGGCTGGAACGGTGACCGTGATACTCGGGGTGAA‑ACCAACTGGGTGCCGGCCGAAGCGGTCGAGCGCATCGAAATCCTGCGTGGCCCGGCCGCCGCACGCTATGGCTCTGGCGCCATGGGCGGGGTGGTCAACATCATCACCAAgcgc                                                    >  3:82812/1‑149 (MQ=255)                                                                                                        gAACGGTGACCGTGATACTCGGGGTGAA‑ACCAACTGGGTGACGGCCGAAGCGGTCGAGCGCATCGAAATCCTCCGTGGCCCGGCCGCCTCACGCTATGCCTCAGGCGCCATGGGCGGGGTGGTCAACATCATCACCAAGCGCCCTTcc                                              >  2:241204/1‑148 (MQ=255)                                                                                                         aaCGGTGACCGTGATACTCGGGGTGAA‑ACCAACTGGGTGCCGGCCGAAGCGGTCGAGCGCATCGAAATCCTGCGTGGCCCGGCCGCCGCACGCTATGGCTCTGGCGCCATGGGCGGGGTGGTCAACATCATCAc                                                           >  6:218236/1‑134 (MQ=255)                                                                                                         aaCGGTGACCGTGATACTCGGGGTGAA‑ACCAACTGGGTGCCGGCCGAAGCGGTCGAGCGCATCGAAATCCTGCGTGGCCCGGCCGCCGCACGCTATGGCTCTGGCGCCATGGGCGGGGTGGTCAACATCATCAc                                                           <  5:218236/134‑1 (MQ=255)                                                                                                         aaCGGTGACCGTGATACTCGGGGTGAA‑ACCAACTGGGTGCCGGCCGAAGCGGTCGAGCGCATCGAAATCCTGCGTGGCCCGGCCGCCGCACGCTATGGCTCTGGCGCCATGGGCGGGGTGGTCAACATCATCACCAAGCGCCCTTCcga                                            <  6:248139/149‑1 (MQ=255)                                                                                                            ggTGACCGTGATACTCGGGGTGAA‑ACCAACTGGGGGCCGGCCGAAGCGGTCGAGCGCATCGAAATCCTGCGTGGCCCGGCCGCCGCACGCTATGGCTCTGGCGCCATGGGCGGGGTGGTCAACATCATCACCAAGCGCCCTTCcgacga                                         <  4:22888/149‑1 (MQ=255)                                                                                                             gTGACCGTGATACTCGGGGTGAA‑ACCAACTGGGTGCCGGCCGAAGCGGTCGAGCGCATCGAAATCCTGCGTGGCCCGGCCGCCGCACGCTATGGCTCTGGCGCCATGGGCGGGGTGGTCAACATCATCACCAAGCGCCCTTCCGACGAg                                        <  6:122381/149‑1 (MQ=255)                                                                                                                  cGTGATACTCGGGGTGAA‑ACCAACTGGGTGCCGGCCGAAGCGGTCGAGCGCATCGAAATCCTGCGTGGCCCGGCCGCCGCACGCTATGGCTCTGGCGCCATGGGCGGGGTGGTCAACATCATCACCAAGCGCCCTTCCGACGAGCTGa                                    >  1:274133/1‑148 (MQ=255)                                                                                                                      aTACTCGGGGTGAA‑ACCATCTGGGTGCCGGCCGAAGCGGTCGAGCGCATCGAAATCCTGCGTGGCCCGGCCGCCGCACGCTATGGCTCTGGCGCCATGGGCGGGGTGGTCAACATCATCACCAAGCTCCCTTCCGACGAGCTGAAAGGc                               <  6:158071/149‑1 (MQ=255)                                                                                                                         cTCGTGGTGAA‑ACCAACTGGGTGCCGGCCGATGCGGTCGAGCGCATCGAAATCCTGCGTGGCCCGGCCGCCGCACGCTATGGCTCTGGCGCGTTTGCGGGGGTGGTGAAATTCATCACCAAGCGCCCTTCCGACGAGCTGAAAGGCAgg                            <  1:241204/149‑2 (MQ=255)                                                                                                                          tCGGGGTGAA‑ACCAACTGGGTGCCGGCCGAAGCGGTCGAGCGCATCGAAATCCTGCGTGGCCCGGCCGCCGCACGCTATGGCTCTGGCGCCATGGGCGGGGTGGTCAACATCATCACCAAGCGCCCTTCCGACGAGCTGAAAGGCAGCg                           >  4:86393/1‑149 (MQ=255)                                                                                                                            ggggTGAA‑ACCAACTGGGTGCCGGCCGAAGCGGTCGAGCGCATCGAAATCCTGCGTGGCCCGGCCGCCGCACGCTATGGCTCTGGCGCCATGGGCGGGGTGGTCAACATCATCACCAAGCGCCCTTCCGACGAGCTGAAAGGCAGCGt                          >  8:108903/1‑148 (MQ=255)                                                                                                                            ggggTGAA‑ACCAACTGGGTGCCGGCCGAAGCGGTCGAGCGCATCGAAATCCTGCGTGGCCCGGCCGCCGCACGCTATGGCTCTGGCGCCATGGGCGGGGTGGTCAACATCATCACCAAGCGCCCTTCCGACGAGCTGAAAGGCAGCGTc                         <  6:46799/149‑1 (MQ=255)                                                                                                                              ggTGAA‑ACCAACTGGGTGCCGGCCGAAGCGGTCGAGCGCATCGAAATCCTGCGTGGCCCGGCCGCCGCACGCTATGGCTCTGGCGCCATGGGCGGGGTGGTCAACATCATCACCAAGCGCCCTTCCGACGAGCTGAAAg                                 <  5:245989/139‑1 (MQ=255)                                                                                                                              ggTGAA‑ACCAACTGGGTGCCGGCCGAAGCGGTCGAGCGCATCGAAATCCTGCGTGGCCCGGCCGCCGCACGCTATGGCTCTGGCGCCATGGGCGGGGTGGTCAACATCATCACCAAGCGCCCTTCCGACGAGCTGAAAg                                 >  6:245989/1‑139 (MQ=255)                                                                                                                                   a‑aCCAACTGGGTGCCGGCCGAAGCGGTCGAGCGCATCGAAATCCTGCGTGGCCCGGCCGCCGCACGCTATGGCTCTGGCGCCATGGGCGGGGTGGTCAACATCATCACCAAGCGCCCTTCCGACGAGCTGAAAGGCAGCGTCAGCCTGt                  <  2:90607/149‑1 (MQ=255)                                                                                                                                     aCCAACTGGGTGCCGGCCGAAGCGGTCGAGCGCATCGAAATCCTGCGTGGCCCGGCCGCCGCACGCTATGGCTCTGGCGCCATGGGCGGGGTGGTCAACATCATCACCAAGCGCCCTTCCGACGAGCTGAAAGGCAGCGTCAGCCTGTa                 >  4:215130/1‑149 (MQ=255)                                                                                                                                       cAACTGGGTGCCGGCCGAAGCGGTCGAGCGCATCGAAATCCTGCGTGGCCCGGCCGCCGCACGCTATGGCTCTGGCGCCATGGGCGGGGTGGTCAACATCATCACCAAGCGCCCTTCCGACGAGCTGAAAGGCAGCGTCAGCCTGTaca               >  8:130101/1‑149 (MQ=255)                                                                                                                                        aaCTGGGTGCCGGCCGAAGCGGTCGAGCGCATCGAAATCCTGCGTGGCccggcacccagttggtttcaccccgagtatcacggtcaccgttccagccatagcgtacggcgttgcgcgcgctggatggcttgcc                              >  2:316153‑M2/1‑48 (MQ=255)                                                                                                                                        aaCTGGGTGCCGGCCGAAGCGGTCGAGCGCATCGAAATCCTGCGTGGCccggcacccagttggtttcaccccgagtatcacggtcaccgttccagccatagcgtacggcgttgcgcgcgctggatggcttgcc                              <  1:316153‑M2/133‑86 (MQ=255)                                                                                                                                           tGGGTGCCGGCCGAAGCGGTCGAGCGCATCGAAATCCTGCGTGGCccggcacccagttggtttcaccccgagtatcacggtcaccgttccagccatagcgtacggcgttgcgcgcgctggatggcttgccgtcgatgaggatcaaggtg           <  5:103786‑M2/149‑105 (MQ=255)                                                                                                                                                gccggccgAAGCGGTCGAGCGCATCGAAATCCTGCGTGGCCCGGCCGCCGCACGCTATGGCTCTGGCGCCATGGGCGGGGTGGTCAACATCATCACCAAGCGCCCTTCCGACGAGCTGAAAGGCAGCGTCAGCCTGTACACGCAGCTGc      >  6:27203/1‑149 (MQ=255)                                                                                                                                                gccggccgAAGCGGTCGAGCGCATCGAAATCCTGCGTGGCCCGGCCGCCGCACGCTATGGCTCTGGCGCCATGGGCGGGGTGGTCAACATCATCACCAAGCGCCCTGCCGACGACCTGAAAGCCAGCGTCAGCCTGTACACGCAGCTGc      >  8:118829/1‑149 (MQ=255)                                                                                                                                                  cGGgccacgcaggatttcgatgcgctcgaccgcttcggccggcacccagttggtgttcaccccgagtatcacggtcaccgttccagccatagcgtacggcgttgcgcgcgctggatggcttgccgtcgatgaggatcaaggtgttttcc    >  1:82795‑M1/1‑3 (MQ=255)                                                                                                                                                    gccgAAGCGGTCGAGCGCATCGAAATCCTGCGTGGCCCGGCCGCCGCACGCTATGGCTCTGGCGCTATGGGCGGGGTGGTCAACATCATCACCAAGCGCCCTTCCGACGAGCTGAAAGGCAGCGTCAGCCTGTACACGCAGCTGCCGGa  <  7:200622/149‑1 (MQ=255)                                                                                                                                                    gccgAAGCGGTCGAGCGCATCGAAATCCTGCGTGGCCCGGCCGCCGCACGCTATGGCTCTGGCGCCATGGGCGGGGTGGTCAACATCATCACCAAGCGCCCTTCCGACGAGCTGAAAGGCAGCGTCAGCCTGTACACGCCGCTGCCgt   >  5:28150/1‑147 (MQ=255)                                                                                                                                                    gccgAAGCGGTCGAGCGCATCGAAATCCTGCGTGGCCCGGCCGCCGCACGCTATGGCTCTGGCGCCATGGGCGGGGTGGTCAACAGCATCCCCCAGCGCCCTTCCGACGAGCTGAAAGGCAGCGTCCGCCTGTACACGCAGCTGCCgg   >  5:23459/1‑148 (MQ=255)                                                                                                                                                    |                                                                                                                                                     AAACAACCGGCAGATCGACCTGCGCGGCATGGGCCCGGAAAACACCTTGATCCTCATCGACGGCAAGCCATCCAGC‑GCGCGCAACGCCGTACGCTATGGCTGGAACGGTGACCGTGATACTCGGGGTGAA‑ACCAACTGGGTGCCGGCCGAAGCGGTCGAGCGCATCGAAATCCTGCGTGGCCCGGCCGCCGCACGCTATGGCTCTGGCGCCATGGGCGGGGTGGTCAACATCATCACCAAGCGCCCTTCCGACGAGCTGAAAGGCAGCGTCAGCCTGTACACGCAGCTGCCGGA  >  NC_002947/2558055‑2558348

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.