New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2568772 =	47 (0.950)	3 (0.060)	3/244	NT	6.0%	coding (776/1050 nt)	PP_2252	hypothetical protein
	?	NC_002947	2568831 =	50 (1.060)					coding (717/1050 nt)	PP_2252	hypothetical protein

TCTGGCGGTTCTCCATCAACTCCTGCCATTCCTGGTTCAACGCCACGTTCAGGATCACCCGCAGTTGTTCGACCATCTGCGGGTGGTCACGGTCATGGGTCATCACCCCGTAACCGGCTGCGGCAATCGAAATCATCGCCCCTGCCACCTTGCCCACTGCCGATGCCACGGCACTGGCGATCCCGCGTGGGGCCAGGGTGGCGCCAAGCTTTTCGCTGGCCTGGGTGGCCACCGAGTTGAGCCCGACATCGGTCCGGCCAGGGCCTTTGCTGGCCTGCTGATGCAAGTGC  >  NC_002947/2568629‑2568918                                                                                                                                                |                                                                                                                                                   tctGGCGGTTCTCCATCAACTCCTGCCATTCCTGGTTCAACGCCACGTTCAGGATCACCCGCAGTTGTTCGACCATCTGCGGGTGGTCACGGTCATGGGTCATCACCCCGTAACCGGCTGCGGCAATCGAAATCATCGCCCCTGCCAcc                                                                                                                                               >  5:119476/1‑149 (MQ=255) agctgctgcgggccaagtcactggaccagcagccggcctggcaagccatgcgccagcacttgcatcagcaggccagcaaaggccctggccggaccgatgtcgggctcaactcggtggccacccaggccagcgaaaagcttggcGCCAcc                                                                                                                                               >  3:204166‑M1/144‑149 (MQ=255)              cATCAACTCCTGCCATTCCTGGTTCAACGCCACGTTCAGGATCACCCGCAGTTGTTCGACCATCTGCGGGTGGTCACGGTCATGGGTCATCACCCCGTAACCGGCTGCGGCAATCGAAATCATCGCCCCTGCCACCTTGCCCACTGcc                                                                                                                                   >  2:85002/1‑148 (MQ=255)                tCAACTCCTGCCATTCCTGGTTCAACGCCACGTTCAGGATCACCCGCAGTTGTTCGACCATCTGCGGGTGGTCACGGTCATGGGTCATCACCCCGTAACCGGCTGCGGCAATCGAAATCATCGCCCCTGCCACCTTGCCCACTGCCGAt                                                                                                                                <  1:211796/149‑1 (MQ=255)                          ccATTCCTGGTTCAACGCCACGTTCAGGATCACCCGCAGTTGTTCGACCATCTGCGGGTGGTCACGGTCATGGGTCATCACCCCGTAACCGGCTGCGGCAATCGAAATCATCGCCCCTGCCACCTTGCCCACTGCCGATGCCACGGc                                                                                                                        <  1:85002/147‑1 (MQ=255)                             ttacTGGTTCAACGCCACGTTCAGGATCACCCGCAGTTGTTCGACCATCTGCGGGTGGTCACGGTCATGGGTCATCACCCCGTAACCGGCTGCGGCAATCGAAATCATCGCCCATGCAACCTTGCCCACTGCCGAt                                                                                                                                >  3:54933/4‑136 (MQ=255)                             ttCCTGGTTCAACGCCACGTTCAGGATCACCCTCAGTTGTTCGAGCATCTGCGGTTGGTCACGGTCATTGGTCATCACCCCGTAACCTGATGCGGCAATCGAAATCATCGCCCCTGCCACCTTGCCCACTGCGGAt                                                                                                                                <  4:54933/136‑1 (MQ=255)                               ccTGGTTCAACGCCACGTTCAGGATCACCCGCAGTTGTTCGACCATCTGCGGGTGGTCACGGTCATGGGTCATCACCCCGTAACCGGCTGCGGCAATCGAAATCATCGCCACTGCCACCTTGCCCACTGCCGATGCCACGGCACTGGc                                                                                                                  >  7:62429/1‑148 (MQ=255)                                cTGGTTCAACGCCACGTTCAGGATCACCCGCAGTTGTTCGACCATCTGCGGGTGGTCACGGTCATGGGTCATCACCCCGTAACCGGCTGCGGCAATCGAAATCATCGCCCCTGCCACCTTGCCCACTGCCGATGCCACGGCACTGGCGa                                                                                                                >  1:169558/1‑149 (MQ=255)                                 tGGTTCAACGCCACGTTCAGGATCACCCGCAGTTGTTCGACCATCTGCGGGTGGTCACGGTCATGGGTCATCACCCCGTAACCGGCTGCGGCAATCGAAATCATCGCCCCTGc                                                                                                                                                   <  6:235877/113‑1 (MQ=255)                                    ttCAACGCCACGTTCAGGATCACCCGCAGTTGTTCGACCATCTGCGGGTGGTCACGGTCATGGGTCATCACCCCGTAACCGGCTGCGGCAATCGAAATCATCGCCCCTGCCACCTTGCCCACTGCCGATGCCACGGCACTGGCGATccc                                                                                                            <  7:116482/149‑1 (MQ=255)                                          gCCACGTTCAGGATCACCCGCAGTTGTTCGACCATCTGCGGGTGGTCACGGTCATGGGTCATCACCCCGTAACCGGCTGCGGCAATCGAAATCATCGCCCCTGCCACCTTGCCCACTGCCGATGCCACGGCACTGGCGATCCCGCGTgg                                                                                                      <  2:169558/149‑1 (MQ=255)                                              ccatgcgccagcacttgcatcagcaggccagcaaagcccctggccggaccgatgtcgggctcaactcggtggccacccaggccagcgaaaagcttggcGCCACCTTGCCCACTGCCGATGCCACGGCACTGGCGATCCCGCGTGGGGc                                                                                                   <  1:52827‑M1/50‑1 (MQ=255)                                               gTTCAGGATCACCCGCAGTTGTTCGACCATCTGCGGGTGGTCACGGTCATGGGTCATCACCCCGTAACCGGCTGCGGCAATCGAAATCATCGCCCCTGCCACCTTGCCCACTGCCGATGCCACGGCACTGGCGATCCCGCGTGGGGc                                                                                                   >  7:115397/1‑147 (MQ=255)                                                 tCAGGATCACCCGCAGTTGTTCGACCATCTGCGGGTGGTCACGGTCATGGGTCATCACCCCGTAACCGGCTGCGGCAATCGAAATCATCGCCCCTGCCACCTTGCCCACTCCCGATGCCACGGCACTGGCGATCCCGCGTGGGGCCAgg                                                                                               >  7:125638/1‑149 (MQ=255)                                                  cAGGATCACCCGCAGTTGTTCGACCATCTGCGGGTGGTCACGGTCATGGGTCATCACCCCGTAACCGGCTGGGGCAATCGAAATCATCGCCCCTGCCACCTTGCCCACTGCCGATGCCACGGCACTGGCGATCCCGCGTGGGGCCAgg                                                                                               <  2:90251/148‑1 (MQ=255)                                                     gATCACCCGCAGTTGTTCGACCATCTGCGGGTGGTCACGGTCATGGGTCATCACCCCGTAACCGGCTGCGGCAATCGAAATCATCGCCCCTGCCACCTTGCCCACTGCCGATGCCACGGCACTGGCGATCCCGCGTGGGGCCAGGGTgg                                                                                           >  6:302046/1‑149 (MQ=255)                                                     ccagcacttgcatcagcaggccagcaaaggccctggccggaccgatgtcgggctcaactcggtggccacccaggccagcgaaaagcttggcGCCACCTTGCCCACTGCCGATGCCACGGCACTGGCGATCCCGCGTGGGGCCAGGGTgg                                                                                           >  2:80100‑M1/92‑149 (MQ=255)                                                       agcacttgcatcagcaggccagcaaaggccctggccggaccgatgtcgggctcaactcggtggccacccaggccagcgaaaagcttggcGCCACCTTGCCCACTGCCGATGCCACGGCACTGGCGATCCCGCGTGGGGCCAGGGTGgcg                                                                                         >  2:52827‑M1/90‑149 (MQ=255)                                                               aGTTGTTCGACCATCTGCGGGTGGTCACGGTCATGGGTCATCACCCCGTAACCGGCTGCGGCAATCGAAATCATCGCCCCTGCCACCTTGCCCACTGCCGATGCCACGGCACTGGCGATCCCGCGTGGGGCCAGGGTGGCGCCAAGCtt                                                                                 >  4:94881/1‑149 (MQ=255)                                                                       gACCATCTGCGGGTGGTCACGGTCATGGGTCATCACCCCGTAACCGGCTGCGGCAATCGAAATCATCGCCCCTGCCACCTTGCCCACTGCCGATGCCACGGCACTGGCGATCCcg                                                                                                           <  7:50930/115‑1 (MQ=255)                                                                       gACCATCTGCGGGTGGTCACGGTCATGGGTCATCACCCCGTAACCGGCTGCGGCAATCGAAATCATCGCCCCTGCCACCTTGCCCACTGCCGATGCCACGGCACTGGCGATCCcg                                                                                                           >  8:50930/1‑115 (MQ=255)                                                                       gACCATCTGCGGGTGGTCACGGTCATGGGTCATCACCCCGTAACCGGCTGCGGCAATCGAAATCATCGCCCCTGCCACCTTGCCCACTGCCGATGCCACGGCACTGGCGATCCCGCGTGGGGCCAGGGTGGCGCCAAGCTTTTCGCTg                                                                          <  1:312144/148‑1 (MQ=255)                                                                        aCCATCTGCGGGTGGTCACGGTCATGGGTCATCACCCCGTAACCGGCTGCGGCAATCGAAATCATCGCCCCTGCCACCTTGCCCACTGCCGATGCCACGGCACTGGCGATCCCGCGTGGGGCCAGGGTGGCGCCAAGCTTTTCGCTGGc                                                                        <  5:291221/149‑1 (MQ=255)                                                                               gCGGGTGGTCACAGTCATGGGTCATCACCCCGTAACCGGCTGCGGCAATCGAAATCATCGCCCCTGCCACCTTGCCCACTGCCGATGCCACGGCACTGGCGATCCCGCGTGGGGCCAGGGTGGCGCCAAGCTTTTCGCTGGCCTGGGTg                                                                 >  6:49209/1‑149 (MQ=255)                                                                                       tcccGGTCATGGGTCATCACCCCGTAACCGGCTGCGGCAATCGAAATCATCGCCCCTGCCACCTTGCCCACTGCCGATGCCACGGCACTGGCGCTCCCGCGTGGGGCCAGGGGGGCGCCAAGCTTTTCGCTGGCCCGGGTGGCCAcc                                                           >  1:92152/4‑147 (MQ=255)                                                                                       tCACGGTCATGGGTCATCACCCCGTAACCGGCTGCGGCAATCGAAATCATCGCCCCTGCCACCTTGCCCACTGCCGATGCCACGGCACTGGCGATCCCGCGTGGGGCCAGGGTGGCGcc                                                                                       >  2:262100/1‑119 (MQ=255)                                                                                       tCACGGTCATGGGTCATCACCCCGTAACCGGCTGCGGCAATCGAAATCATCGCCCCTGCCACCTTGCCCACTGCCGATGCCACGGCACTGGCGATCCCGCGTGGGGCCAGGGTGGCGcc                                                                                       <  1:262100/119‑1 (MQ=255)                                                                                       gcACGGGCCTGGCTCATCACCCCGTAACCGGCTGCCCCAATCGAAATCATCGCCCCTGCCCCCTTGCCCACTGCCGATGCCACGGCACTGGCGATCCCTCGTGGCGCCAGGGTGGCGCCATGCTTTTCGCTGGCCGGGTGGGGCACCgt                                                         <  8:62429/148‑2 (MQ=255)                                                                                         aCGGTCATGGGTCATCACCCCGTAACCGGCTGCGGCAATCGAAATCATCGCCCCTGCCACCTTGCCCACTGCCGATGCCACGGCACTGGCGATCCCGCGTGGGGCCAGGGTGGCGCCAAGCTTTTCGCTGGCCTGGGTGGCCACCGAGt                                                       >  1:243674/1‑149 (MQ=255)                                                                                               aTGGGTCATCACCCCGTAACCGGCTGCGGCAATCGAAATCATCGCCCCTGCCACCTTGCCCACTGCCGATGCCACGGCACTGGCGATCCCGCGTGGGGCCAGGGTGGCGCCAAGCTTTTCGCTGGCCTGGGTGGCCACCGAGTTGAGc                                                  <  5:302046/148‑1 (MQ=255)                                                                                                   gTCATCACCCCGTAACCGGCTGCGGCAATCGAAATCATCGCCCCTGCCACCTTGCCCACTGCCGATGCCACGGCACTGGCGATCCCGCGTGGGGCCAGGGTGGCGCCAAGCTTTTCGCTGGCCTGGGTGGCCACCGAGTTGAGCCCGa                                              >  6:270475/1‑148 (MQ=255)                                                                                                      atcaCCCCGTAACCGGCTGCGGCAATCGAAATCATCGCCCCTGCCACCTTGCCCACTGCCGATGCCACGGCACTGGCGATCCCGCGTGGGGCCAGGGTTGCGCCAACCTTTTCGCTCGCCTGGGTGGCCACCGAGTTGAGccacatcg                                           >  8:236369/1‑142 (MQ=255)                                                                                                      atcaCCCCGTAACCGGCTGCGGCAATCGAAATCATCGCCCCTGCCACCTTGCCCACTGCCGATGCCACGGCACTGGCGATCCCGCGTGGGGCCAGGGTGGCGCCAAGCTTTTCGCTGGCCTGGGTGGCCACCGAGTTGAGc                                                  <  7:236369/141‑1 (MQ=255)                                                                                                       tcaCCCCGTAACCGGCTGCGGCAATCGAAATCATCGCCCCTGCCACCTTGCCCACTGCCGATGCCACGGCACTGGCGATCCCGCGTGGGGCCAGGGTGGCGCCAAGCTTTTCGCTGGCCTGGGTGGCCACCGAGTTGAGCCCGACATCg                                         >  3:19927/1‑149 (MQ=255)                                                                                                         aCCCCGTAACCGGCTGCGGCAATCGAAATCATCGCCCCTGCCACCTTGCCCACTGCCGATGCCACGGCACTGGCGATCCCGCGTGGGGCCAGGGTGGCGCCAAGCTTTTCGCTGGCCTgg                                                                    >  2:160850/1‑120 (MQ=255)                                                                                                         aCCCCGTAACCGGCTGCGGCAATCGAAATCATCGCCCCTGCCACCTTGCCCACTGCCGATGCCACGGCACTGGCGATCCCGCGTGGGGCCAGGGTGGCGCCAAGCTTTTCGCTGGCCTgg                                                                    <  1:160850/120‑1 (MQ=255)                                                                                                          ccccGTAACCGGCTGCGGCAATCGAAATCATCGCCCCTGCCACCTTGCCCACTGCCGATGCCACGGCACTGGCGATCCCGCGTGGGGCCAGGGTGGCGCCAAGCTTTTCGCTGGCCTGGGTGGCCACCGAGTTGAGCCCGACATCGGTc                                      >  1:97349/1‑149 (MQ=255)                                                                                                           cccGTAACCGGCTGCGGCAATCGAAATCATCGCCCCTGCCACCTTGCCCACTGCCGATGCCACGGCACTGGCGATCCCGCGTGGGGCCAGGGTGGCGCCAAGCTTTTCGCTGGCCTGGGTGGCCACCGAGTTGAGCCCGACATCGGTcc                                     >  4:148612/1‑149 (MQ=255)                                                                                                             cGTAACCGGCTGCGGCAATCGAAATCATCGCCCCTGCCACCTTGCCCACTGCCGATGCCACGGCACTGGCGATCCCGCGTGGGGCCAGGGTGGCGCCAAGCTTTTCGCTGGCCTGGGTGGCCACCGAGTTGAGCCCGACATCg                                         <  1:126190/143‑1 (MQ=255)                                                                                                              gTAACCGGCTGCGGCAATCGAAATCATCGCCCCTGCCACCTTGCCCACTGCCGATGCCACGGCACTGGCGATCCCGCGTGGGGCCAGGGTGGCGCCAAGCTTTTCGCTGGCCTGGGTGGCCACCGAGTTGAGCCCGACATCGGTCCGGc                                  <  2:243674/149‑1 (MQ=255)                                                                                                                  ccGGCTGCGGCAATCGAAATCATCGCCCCTGCCACCTTGCCCACTGCCGATGCCACGGCACTGGCGATCCCGCGTGGGGCCAGGGTGGCGCCAAGCTTTTCGCTGGCCTGGGTGGCCACCGAGTTGAGCCCGACATCGGTCCGGCCAgg                              >  1:140400/1‑149 (MQ=255)                                                                                                                  ccGGCTGCGGCAATCGAAATCATCGCCCCTGCCACCTTGCCCACTGCCGATGCCACGGCACTGGCGATCCCGCGTGGGGCCAGGGTGGCGCCAAGCTTTTCGCTGGCCTGGGTGGCCACCGAGTTGAGCCCGACATCGGTCCGGCCAg                               >  5:145254/1‑148 (MQ=255)                                                                                                                         cGGCAATCGAAATCATCGCCCCTGCCACCTTGCCCACTGCCGATGCCACGGCACTGGCGATCCCGCGTGGGGCCAGGGTGGCGCCAAGCTTTTCGCTGGCCTGGGTGGCCACCGAGTTGAGCCCGACATCGGTCCGGCCAGGGCCttt                        <  3:148612/148‑1 (MQ=255)                                                                                                                          ggCAATCGAAATCATCGCCCCTGCCACCTTGCCCACTGCCGATGCCACGGCACTGGCGATCCCGCGTGGGGCCAGGGTGGCGCCAAGCTTTTCGCTGGCCTgg                                                                    <  2:299610/103‑1 (MQ=255)                                                                                                                          ggCAATCGAAATCATCGCCCCTGCCACCTTGCCCACTGCCGATGCCACGGCACTGGCGATCCCGCGTGGGGCCAGGGTGGCGCCAAGCTTTTCGCTGGCCTgg                                                                    >  1:299610/1‑103 (MQ=255)                                                                                                                          ggCAATCGAAATCATCGCCCCTGCCACCTTGCCCACTGCCGATGCCACGGCACTGGCGATCCCGCGTGGGGCCAGGGTGGCGCCAAGCTTTTCGCTGGCCTGGGTGGCCACCGAGTTGAGCCCGACATCGGTCCGGCCAgg                              <  7:72444/141‑1 (MQ=255)                                                                                                                          ggCAATCGAAATCATCGCCCCTGCCACCTTGCCCACTGCCGATGCCACGGCACTGGCGATCCCGCGTGGGGCCAGGGTGGCGCCAAGCTTTTCGCTGGCCTGGGTGGCCACCGAGTTGAGCCCGACATCGGTCCGGCCAgg                              >  8:72444/1‑141 (MQ=255)                                                                                                                            cAATCGAAATCATCGCCCCTGCCACCTTGCCCACTGCCGATGCCACGGCACTGGCGATCCCGCGTGGGGCCAGGGTGGCGCCAAGCTTTTCGCTGGCCTgg                                                                    >  6:164624/1‑101 (MQ=255)                                                                                                                            cAATCGAAATCATCGCCCCTGCCACCTTGCCCACTGCCGATGCCACGGCACTGGCGATCCCGCGTGGGGCCAGGGTGGCGCCAAGCTTTTCGCTGGCCTgg                                                                    <  5:164624/101‑1 (MQ=255)                                                                                                                                  aaaTCATCGCCCCTGCCACCTTGCCCACTGCCGATGCCACGGCACTGGCGATCCCGCGTGGGGCCAGGGTGGCGCCAAGCTTTTCGCTGGCCTGGGTGGCCACCGAGTTGAGCCCGACATCGGTCCGGCCAGGGCCTTTGCTGGCctgc              <  2:97349/149‑1 (MQ=255)                                                                                                                                  aaaTCATCGCCCCTGCCACCTTGCCCACTGCCGATGCCACGGCACTGGCGATCCCGCGTGGGGCCAGGGTGGCGCCAAGCTTTTCGCTGGCCTGGGTGGCCACCGAGTTGAGCCCGACATCGGTCCGGCCAGGGCCTTTGCTGGCctgc              >  1:57095/1‑149 (MQ=255)                                                                                                                                            cccTGCCACCTTGCCCACTGCCGATGCCACGGCACTGGCGATCCCGCGTGGGGCCAGGGTGGCGCCAAGCTTTTCGCTGGCCTGGGTGGCCACCGAGTTGAGCCCGACATCGGTCCGGCCAGGGCCTTTGCTGGCCTGCTGATGCAAGt    <  8:115397/149‑1 (MQ=255)                                                                                                                                             ccTGCCACCTTGCCCACTGCCGATGCCACGGCACTGGCGATCCCGCGTGGGGCCAGGGTGGCGCCAAGCTTTTCGCTGGCCTGGGTGGCCACCGAGTTGAGCCCGACATCGGTCCGGCCAGGGCCTTTGCTGGCCTGCTGATGCAAGTg   >  1:199982/1‑149 (MQ=255)                                                                                                                                              cTGCCACCTTGCCCACTGCCGATGCCACGGCACTGGCGATCCCGCGTGGGGCCAGGGTGGCGCCAAGCTTTTCGCTGGCCTGGGTGGCCACCGAGTTGAGCCCGACATCGGTCCGGCCAGGGCCTTTGCTGGCCTGCTGATGGAAGTGc  >  3:187446/1‑149 (MQ=255)                                                                                                                                                |                                                                                                                                                   TCTGGCGGTTCTCCATCAACTCCTGCCATTCCTGGTTCAACGCCACGTTCAGGATCACCCGCAGTTGTTCGACCATCTGCGGGTGGTCACGGTCATGGGTCATCACCCCGTAACCGGCTGCGGCAATCGAAATCATCGCCCCTGCCACCTTGCCCACTGCCGATGCCACGGCACTGGCGATCCCGCGTGGGGCCAGGGTGGCGCCAAGCTTTTCGCTGGCCTGGGTGGCCACCGAGTTGAGCCCGACATCGGTCCGGCCAGGGCCTTTGCTGGCCTGCTGATGCAAGTGC  >  NC_002947/2568629‑2568918

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.