New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2646418	48 (0.970)	4 (0.090)	4/236	NT	8.6%	coding (896/2499 nt)	PP_2316	ABC transporter permease
	?	NC_002947	= 2646516	41 (0.900)					coding (798/2499 nt)	PP_2316	ABC transporter permease

GCGGGCACCACGCTCGGCAGCAAGCCGTGCAGCAGGCGGAACAGGCCCAGCTGAGCCAGCCAGCCGAGCAAGGCGCCGGCCAGGGCAGCGACCAGGCCGAGCATGGCCAGTTGCAGGCAATACAGGCCCAAT‑GCCTGGTGGCGCGACAGGCCCAGGCAGCGCAGCAGGGCACTGGCG‑TCCAGCCGGCGTGCAGCATAGCGACTGGCCGACAGTGCCACGGCTACGCCTGCCAGCAATACAGCCACCAGGCTGGCCATGTTCAGGTAGCGTTCGGCTTTGCCCAG  >  NC_002947/2646277‑2646560                                                                                                                                               |                                                                                                                                                gCGGGCACCACGCTCGGCAGCAAGCCGTGCAGCAGGCGGAACAGGCCCAGCTGAGCCAGCCAGCCGAGCAAGGCGCCGGCCAGGGCAGCGACCAGGCCGAGCATGGCCAGTTGCAGGCAATACAGGCCCAAT‑GCCTGGTGGCGCGACAg                                                                                                                                          >  7:27061/1‑149 (MQ=255)  cGGGCACCACGCTCGGCAGCAAGCCGTGCAGCAGGCGGAACAGGCCCAGCTGAGCCAGCCAGCCGAGCAAGGCGCCGGCCAGGGCAGCGACCAGGCCGAGCATGGCCAGTTGCAGGCAATACAGGCCCAAT‑GCCTGGTGGCGCGACAgg                                                                                                                                         <  2:260621/149‑1 (MQ=255)       accacGCTCGGCAGCAAGCCGTGCAGCAGGCGGAACAGGCCCAGCTGAGCCAGCCAGCCGAGCAAGGCGCCGGCCAGGGCAGCGACCAGGCCGAGCATGGCCAGTTGCAGGCAATACAGGCCCAAT‑GCCTGGTGGCGCGACAGGCCCAg                                                                                                                                    <  2:22173/149‑1 (MQ=255)         cacGCTCGGCAGCAAGCCGTGCAGCAGGCGGAACAGGCCCAGCTGAGCCAGCCAGCCGAGCAAGGCGCCGGCCAGGGCAGCGACCAGGCCGAGCATGGCCAGTTGCAGGCAATACAGGCCCAAT‑GCCTGGTGGCGCGACAGGCCCAgg                                                                                                                                   >  6:77740/1‑148 (MQ=255)          acGCTCGGCAGCAAGCCGTGCAGCAGGCGGAACAGGCCCAGCTGAGCCAGCCAGCCGAGCAAGGCGCCGGCCAGGGCAGCGACCAGGCCGAGCATGGCCAGTTGCAGGCAATACAGGCCCAAT‑GCCTGGTGGCGCGACa                                                                                                                                           <  2:177395/139‑1 (MQ=255)          acGCTCGGCAGCAAGCCGTGCAGCAGGCCGAACAGGCCCAGCTGAGCCAGCCAGCCGAGCAAGGCGCCGGCCAGGGCAGCGACCAGGCCGAGCATGGCCAGTTGCAGGCAATACAGGCCCAAT‑GCCTGGTGGCGCGACa                                                                                                                                           >  1:177395/1‑139 (MQ=255)            gCTCGGCAGCAAGCCGTGCAGCAGGCGGAACAGGCCCAGCTGAGCCAGCCAGCCGAGCAAGGCGCCGGCCAGGGCAGCGACCAGGCCGAGCATGGCCAGTTGCAGGCAATACAGGCCCAAT‑GCCTGGTGGCGCGACAGGCCCAGgcagc                                                                                                                               <  2:120219/149‑1 (MQ=255)                ggCAGCAAGCCGTGCAGCAGGCGGAACAGGCCCAGCTGAGCCAGCCAGCCGAGCAAGGCGCCGGCCAGGGCAGCGACCAGGCCGAGCATGGCCAGTTGCAGGCAATACAGGCCCAAT‑GCCTGGTGGCGCGACAGGCCCAGgcagcgc                                                                                                                             <  5:77740/147‑1 (MQ=255)                      aaGCCGTGCAGCAGGCGGAACAGGCCCAGCTGAGCCAGCCAGCCGAGCAAGGCGCCGGCCAGGGCAGCGACCAGGCCGAGCATGGCCAGTTGCAGGCAATACAGGCCCAAT‑GCCTGGTGGCGCGACAGGCCCAGGCAGCGCAGCAggg                                                                                                                      >  5:240885/1‑148 (MQ=255)                             gcagcaGGCGGAACAGGCCCAGCTGAGCCAGCCAGCCGAGCAAGGCGCCGGCCAGGGCAGCGACCAGGCCGAGCATGGCCAGTTGCAGGCAATACAGGCCCAAT‑GCCTGGTGGCGCGACAGGCCCAGGCAGCGCAGCAGGGCACTGGCg                                                                                                              >  1:10992/1‑149 (MQ=255)                             gcagcaGGCGGAACAGGCCCAGCTGAGCCAGCCAGCCGAGCAAGGCGCCGGCCAGGGCAGCGACCAGGCCGAGCATGGCCAGTTGCAGGCAATACAGGCCCAAT‑GCCTGGTGGCGCGACAGGCCCAGGCAGCGCAGCAGGGCACTGGCg                                                                                                              >  2:14117/1‑149 (MQ=255)                              cagcagGCGGAACAGGCCCAGCTGAGCCAGCCAGCCGAGCAAGGCGCCGGCCAGGGCAGCGACCAGGCCGAGCATGGCCAGTTGCAGGCAATACAGGCCCAAT‑GCCTGGTGGCGCGACAGGCCCAGGCAGCGCAGCAGAGCACTGGCG‑t                                                                                                            <  5:288238/149‑1 (MQ=255)                               agcagGCGGAACAGGCCCAGCTGAGCCAGCCAGCCGAGCAAGGCGCCGGCCAGGGCAGCGACCAGGCCGAGCATGGCCAGTTGCAGGCAATACAGGCCCAAT‑GCCTGGTGGCGCGACAGGCCCAGGCAGCGCAGCAGGGCACTGGCG‑Tc                                                                                                           >  7:284020/1‑149 (MQ=255)                                 cagGCGGAACAGGCCCAGCTGAGCCAGCCAGCCGAGCAAGGCGCCGGCCAGGGCAGCGACCAGGCCGAGCATGGCCAGTTGCAGGCAATACAGGCCCAAT‑GCCTGGTGGCGCGACAGGCCCAGGCAGCGCAGCAGGGCACTGGCG‑TCCa                                                                                                         <  8:284020/149‑1 (MQ=255)                                   ggCGGAACA‑GCCCAGCTGAGCCAGCCAGCCGAGCAAGGCGCCGGCCAGGGCAGCGACCAGGCCGAGCATGGCCAGTTGCAGGCAATACAGGCCCAAT‑GCCTGGTGGCtgtattgctggcaggcgtagccgtggcactgtcggccagtcg                                                                                                       >  4:281037‑M1/1‑107 (MQ=255)                                           aGGCCCAGCTGAGCCAGCCAGCCGAGCAAGGCGCCGGCCAGGGCAGCGACCAGGCCGAGCATGGCCAGTTGCAGGCAATACAGGCCCAAT‑GCCTGGTGGCGCGACAGGCCCAGGCAGCGCAGCAGGGCACTGGCG‑TCCAGCCGGCGTg                                                                                                >  3:106813/1‑148 (MQ=255)                                            ggCCCAGCTGAGCCAGCCAGCCGAGCAAGGCGCCGGCCAGGGCAGCGACCAGGCCGAGCATGGCCAGTTGCAGGCAATACAGGCCCAAT‑GCCTGGTGGCGCGACAGGCCCAGGCAGCGCAGCAggg                                                                                                                      <  8:130504/126‑1 (MQ=255)                                            ggCCCAGCTGAGCCAGCCAGCCGAGCAAGGCGCCGGCCAGGGCAGCGACCAGGCCGAGCATGGCCAGTTGCAGGCAATACAGGCCCAAT‑GCCTGGTGGCGCGACAGGCCCAGGCAGCGCAGCAggg                                                                                                                      >  7:130504/1‑126 (MQ=255)                                            ggCCCAGCTGAGCCAGCCAGCCGAGCAAGGCGCCGGCCAGGGCAGCGACCAGGCCGAGCATGGCCAGTTGCAGGCAATACAGGCCCAAT‑GCCTGGTGGCGCGACAGGCCCAGGCAGCGCAGCAGGGCACTGGCG‑TCCAGCCGGCGTgca                                                                                              <  2:17674/149‑1 (MQ=255)                                            ggCCCAGCTGAGCCAGCCAGCCGAGCAAGGCGCCGGCCAGGGCAGCGACCAGGCCGAGCATGGCCAGTTGCAGGCAATACAGGCCCAAT‑GCCTGGTGGCGCGACAGGCCCAGGCAGCGCAGCAGGGCACTGGCG‑TCCAGCCGGCGTgca                                                                                              <  5:57032/149‑1 (MQ=255)                                             gCCCAGCTGAGCCAGCCAGCCGAGCAAGGCGCCGGCCAGGGCAGCGACCAGGCCGAGCATGGCCAGTTGCAGGCAATACAGGCCCAAT‑GCCTGGTGGCGCGACAGGCCCAGGCAGCGCAGCAGGGCACTGGCG‑TCCAGCCGGCGTgcag                                                                                             >  3:23129/1‑149 (MQ=255)                                               ccAGCTGAGCCAGCCAGCCGAGCAAGGCGCCGGCCAGGGCAGCGACCAGGCCGAGCATGGCCAGTTGCAGGCAATACAGGCCCAAT‑GCCTGGTGGCGCGACAGGCCCAGGCAGCGCAGCAGGGCACTGGCG‑TCCAGCCGGCGTgcagca                                                                                           <  4:28153/149‑1 (MQ=255)                                                        ccagccagccGAGCAAGGCGCCGGCCAGGGCAGCGACCAGGCCGAGCATGGCCAGTTGCAGGCAATACAGGCCCAAT‑GCCTGGTGGCtgtattgctggcaggcgtagccgtggcactgtcggccagtcgctatgctgcacgccggctgg                                                                                   <  3:281037‑M1/149‑63 (MQ=255)                                                        ccagccagccGAGCAAGGCGCCGGCCAGGGCAGCGACCAGGCCGAGCATGGCCAGTTGCAGGCAATACAGGCCCAAT‑GCCTGGTGGCGCGACAGGCCCAGGCAGCGCAGCAGGGCACTGGCG‑TCCAGCCGGCGTGCAGCATAGCGACTg                                                                                  >  6:253697/1‑149 (MQ=255)                                                           gccagccGAGCAAGGCGCCGGCCAGGGCAGCGACCAGGCCGAGCATGGCCAGTTGCAGGCAATACAGGCCCAAT‑GCCTGGTGGCGCGACAGGCCCAGGCAGCGCAGCAGGGCACTGGCG‑TCCAGCCGGCGTGCAGCATAg                                                                                        >  6:136914/1‑140 (MQ=255)                                                           gccagccGAGCAAGGCGCCGGCCAGGGCAGCGACCAGGCCGAGCATGGCCAGTTGCAGGCAATACAGGCCCAAT‑GCCTGGTGGCGCGACAGGCCCAGGCAGCGCAGCAGGGCACTGGCG‑TCCAGCCGGCGTGCAGCATAg                                                                                        <  5:136914/140‑1 (MQ=255)                                                               gccGAGCAAGGCGCCGGCCAGGGCAGCGACCAGGCCGAGCATGGCCAGTTGCAGGCAATACAGGCCCAAT‑GCCTGGTGGCGCGACAGGCCCAGGCAGCGCAGCAGGGCACTGGCG‑TCCAGCCGGCGTGCAGCATAGCGACTGGCCGa                                                                             >  4:201102/1‑147 (MQ=255)                                                                      aaGGCGCCGGCCAGGGCAGCGACCAGGCCGAGCATGGCCAGTTGCAGGCAATACAGGCCCAAT‑GCCTGGTGGCtgtattgctggcaggcgtagccgtggcactgtcggccagtcgctatgctgcacgccggctggacgccagtgccctg                                                                     >  1:171763‑M1/1‑73 (MQ=255)                                                                      aaGGCGCCGGCCAGGGCAGCGACCAGGCCGAGCATGGCCAGTTGCAGGCAATACAGGCCCAAT‑GCCTGGTGGCGCGACAGGCCCAGGCAGCGCAGCAGGGCACTGGCG‑TCCAGCCGGCGTGCAGCATAGCGACTGGCCGACAGTGCCAc                                                                    <  3:201102/149‑1 (MQ=255)                                                                        ggCGCCGGCCAGGGCAGCGACCAGGCCGAGCATGGCCAGTTGCAGGCAATACAGGCCCAATGGGCAGGTGGCGCGACAGGCCCAGGCAGCGCAGCAGGGCCCTGGCG‑ACCAGCCGGCGTGCAGCATAGCGAATGGCCGACAGTGCCACg                                                                   >  1:94559/1‑149 (MQ=255)                                                                        ggCGCCGGCCAGGGCAGCGACCAGGCCGAGCATGGCCAGTTGCAGGCAATACAGGCCCAAT‑GCCTGGTGGCGCGACAGGCCCAGGCAGCGCAGCAGGGCACTGGCG‑TCCAGCCGGCGTGCAGTATAGCGACTGGCCGACAGTGCCACgg                                                                  <  8:27061/149‑1 (MQ=255)                                                                              ggCCAGGGCAGCGACCAGGCCGAGCATGGCCAGTTGCAGGCAATACAGGCCCAAT‑GCCTGGTGGCGCGACAGGCCCAGGCAGCGCAGCAGGGCACTGGCG‑TCCAGCCGGCGTGCAGCATAGCGACTGGCCGACAGTGCCACGGCTACGc                                                            <  5:107009/149‑1 (MQ=255)                                                                                          gACCAGGCCGAGCATGGCCAGTTGCAGGCAATACAGGCCCAAT‑GCCTGGTGGCGCGACAGGCCCAGGCAGCGCAGCAGGGCACTGGCG‑TCCAGCCGGCGTGCAGCATAGCGACTGGCCGACAGTGCCACGGCTACGCCTGCCAGCAATa                                                >  1:143876/1‑149 (MQ=255)                                                                                            ccAGGCCGAGCATGGCCAGTTGCAGGCAATACAGGCCCAAT‑GACTGGTGGCGCGACAGGCCCAGGCAGCGAAGCAGGGCACTGGCG‑TCCAGCCGGCGTGCAGCATAGCGACTGGCCGACAGTGCCACGGCTACGCCTGCCAGCAATACa                                              >  2:195122/1‑149 (MQ=255)                                                                                                   gAGCATGGCCAGTTGCAGGCAATACAGGCCCAAT‑GCCTGGTGGCtgtattgctggcaggcgtagccgtggcactgtcggccagtcgctatgctgcacgccggctggacgccagtgccctgctgcgctgcctgggcctgtcgcgccacca                                        <  2:171763‑M1/149‑106 (MQ=255)                                                                                                   gAGCATGGCCAGTTGCAGGCAATACAGGCCCAAT‑GCCTGGTGGCGCGACAGGCCCAGGCAGCGCAGCAGGGCAAAAGCGGTCCAGCCGAAATGCAGCATAGCGACTGGCCGACAGTGCCACGGCTACGCCTGCCAGCAATACAgccac                                         <  1:97854‑M2/148‑6 (MQ=255)                                                                                                    aGCATGGCCAGTTGCAGGCAATACAGGCCCAAT‑GCCTGGTGGCGCGACAGGCCCAGGCAGCGCAGCAGGGCACTGGCG‑TCCAGCCGGCGTGCATCATAGCGACTGGCCGACAGTGCCACGGCTACGCCTGCCAGCAATACAgccaccag                                      >  2:94559‑M2/1‑141 (MQ=255)                                                                                                        tGGCCAGTTGCAGGCAATACAGGCCCAAT‑GCCTGGTGGCGCGACAGGCCCAGGCAGCGCAGCAGGGCACTGGCG‑TCCAGCCGGCGTGCAGCATAGCGACTGGCCGACAGTGCCACGGCTACGCCTGCCAGCAATACAGCCACCAGGCTg                                  <  1:200387/149‑1 (MQ=255)                                                                                                        tGGCCAGTTGCAGGCAATACAGGCCCAAT‑GCCTGGTGGCGCGACAGGCCCAGGCAGCGCAGCAGGGCACTGGCG‑TCCAGCCGGCGTGCAGCATAGCGACTGGCCGACAGTGCCACGGCTACGCCTGCCAGCAATACAGCCACCAGGCTg                                  <  1:14117/149‑1 (MQ=255)                                                                                                           ccAGTTGCAGGCAATACAGGCCCAAT‑GCCTGGTGGCGCGACAGGCCCAGGCAGCGCAGCAGGGCACTGGCG‑TCCAGCCGGCGTGCAGCATAGCGACTGGCCGACAGTGCCACGGCTACGCCTGCCAGCAATACAGCCACCAGGCTGGc                                >  4:189035/1‑148 (MQ=255)                                                                                                                   aGGCAATACAGGCCCAAT‑GCCTGGTGGCGCGACAGGCCCAGGCAGCGCAGCAGGGCACTGGCG‑TCCAGCCGGCGTGCAGCATAGc                                                                                       >  8:64681/1‑85 (MQ=255)                                                                                                                   aGGCAATACAGGCCCAAT‑GCCTGGTGGCGCGACAGGCCCAGGCAGCGCAGCAGGGCACTGGCG‑TCCAGCCGGCGTGCAGCATAGc                                                                                       <  7:64681/85‑1 (MQ=255)                                                                                                                   aGGCAATACAGGCCCAAT‑GCCTGGTGGCGCGACAGGCCCAGGCAGCGCAGCAGGGCACTGGCG‑TCCAGCCGGCGTGCAGCATAGCGACTGGCCGACAGTGCCACGGCTACGCCTGCCAGCAATACAGCCACCAGGCTGGCCATGTTCAg                       >  2:79854/1‑149 (MQ=255)                                                                                                                     gCAATACAGGCCCAAT‑GCCTGGTGGCGCGACAGGCCCAGGCAGCGCAGCAGGGCACTGGCG‑TCCAGCCGGCGTGCAGCATAGCGACTGGCCGACAGTGCCACGGCTACGCCTGCCAGCAATACAGCCACCAGGCTGGCCATGTTCAgg                      >  5:175237/1‑148 (MQ=255)                                                                                                                      cAATACAGGCCCAAT‑GCCTGGTGGCGCGACAGGCCCAGGCAGCGCAGCAGGGCACTGGCG‑TCCAGCCGGCGTGCAGCATAGCGACTGGCCGACAGTGCCACGGCTACGCCTGCCAGCAATACAGCCACCAGGCTGGCCATGTTCAGGTa                    <  7:71059/149‑1 (MQ=255)                                                                                                                       aaTACAGGCCCAAT‑GCCTGGTGGCGCGACAGGCCCAGGCAGCGCAGCAGGGCACTGGCG‑TCCAGCCGGCGTGCAGCATAGCGACTGGCCGACAGt                                                                         >  4:166520/1‑95 (MQ=255)                                                                                                                       aaTACAGGCCCAAT‑GCCTGGTGGCGCGACAGGCCCAGGCAGCGCAGCAGGGCACTGGCG‑TCCAGCCGGCGTGCAGCATAGCGACTGGCCGACAGt                                                                         <  3:166520/95‑1 (MQ=255)                                                                                                                         tACAGGCCCAAT‑GCCTGGTGGCGCGACAGGCCCAGGCAGCGCAGCAGGGCACTGGCG‑TCCAGCCGGCGTGCAGCATAGCGACTGGCCGACAGTGCCACGGCTACGCCTGCCAGCAATACAGCCACCAGGCTGGCCATGTTCAGGTAGCg                 <  4:106813/149‑1 (MQ=255)                                                                                                                          aCAGGCCCAAT‑GCCTGGTGGCGCGACAGGCCCAGGCAGCGCAGCAGGGCACTGGCG‑TCCAGCCGGCGTGCAGCATAGCGACTGGCCGACAGTGCCACGGCTACGCCTGCCAGCAATACAGCCACCAGGCTGGCCATGTTCAGGTAGCGt                >  6:203400/1‑149 (MQ=255)                                                                                                                            aGGCCCAAT‑GCCTGGTGGCGCGACAGGCCCAGGCAGCGCAGCAGGGCACTGGCG‑TCCAGCCGGCGTGCAGCATAGCGACTGGCCGACAGTGCCACGGCTACGCCTGCCAGCAATACAGCCACCAGGCTGGCCATGTTCAGGTAGCGTTc              >  3:262730/1‑149 (MQ=255)                                                                                                                            aGGCCCAAT‑GCCTGGTGGCGCGACAGGCCCAGGCAGCGCAGCAGGGCACTGGCG‑TCCAGCCGGCGTGCAGCATAGCGACTGGCCGACAGTGCCACGGCTACGCCTGCCAGCAATACAGCCACCAGGCTGGCCATGTTCAGGTAGCGTTc              <  3:189035/149‑1 (MQ=255)                                                                                                                              gCCCAAT‑GCCTGGTGGCGCGACAGGCCCAGGCAGCGCAGCAGGGCACTGGCG‑TCCAGCCGGCGTGCAGCATAGCGACTGGCCGACAGTGCCACGGCTACGCCTGCCAGCAATACAGCCACCAGGCTGGCCATGTTCAGGTAGCGTTCgg            >  1:199345/1‑149 (MQ=255)                                                                                                                                        cTGGTGGCtgtattgctggcaggcgtagccgtggcactgtcggccagtcgctatgatgcacgccggctggacgccagtgccctgctgcgctgcctgggcctgtcgcgccaccaggcattgggcctgtattgcctgcaactggccatgct    >  2:94559‑M1/1‑8 (MQ=255)                                                                                                                                        cTGGTGGCGCGACAGGCCCAGGCAGCGCAGCAGGGCACTGGCG‑TCCAGCCGGc                                                                                                   <  4:21635/53‑1 (MQ=255)                                                                                                                                        cTGGTGGCGCGACAGGCCCAGGCAGCGCAGCAGGGCACTGGCG‑TCCAGCCGGc                                                                                                   >  3:21635/1‑53 (MQ=255)                                                                                                                                         tggtggCGCGACAGGCCCAGGCAGCGCAGCAGGGCACTGGCG‑TCCAGCCGGCGTGCAGCATAGCGACTGGCCGACAGTGCCACGGCTACGCCTGCCAGCAATACAgccaccaggcattgggcctgtattgcctgcaactggccatgctc  <  2:171763‑M2/149‑45 (MQ=255)                                                                                                                                           gtggCtgtattgctggcaggcgtagccgtggcactgtcggccagtcgctatgctgcatttcggctggaccgcttttgccctgctgcgctgcctgggcctgtcgcgccaccaggcattgggcctgtattgcctgcaactggccatgctc  <  1:97854‑M1/148‑144 (MQ=255)                                                                                                                                               |                                                                                                                                                GCGGGCACCACGCTCGGCAGCAAGCCGTGCAGCAGGCGGAACAGGCCCAGCTGAGCCAGCCAGCCGAGCAAGGCGCCGGCCAGGGCAGCGACCAGGCCGAGCATGGCCAGTTGCAGGCAATACAGGCCCAAT‑GCCTGGTGGCGCGACAGGCCCAGGCAGCGCAGCAGGGCACTGGCG‑TCCAGCCGGCGTGCAGCATAGCGACTGGCCGACAGTGCCACGGCTACGCCTGCCAGCAATACAGCCACCAGGCTGGCCATGTTCAGGTAGCGTTCGGCTTTGCCCAG  >  NC_002947/2646277‑2646560

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.