New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2646418	48 (0.970)	4 (0.090)	4/236	NT	8.6%	coding (896/2499 nt)	PP_2316	ABC transporter permease
	?	NC_002947	= 2646516	41 (0.900)					coding (798/2499 nt)	PP_2316	ABC transporter permease

CCAGGCCGAGCATGGCCAGTTGCAGGCAATACAGGCCCAATGCCTGGTGGCGCGACAGGCCCAGGCAGCGCAGCAGGGCACTGGCG‑TCCAGCCGGCGTGCAGCATAGCGACTGGCCGACAGTGCCACGGCTACGCCTGCCAGCAATACAGCCACCAGGCTGGCCATGTTCAGGTAGCGTTCGGCTTTGCCCAGCGCGCCGCCGATCTGTTGGTTGCCATCACGGGTGTCACGCAGGCGCTGGTTGGCGGCCAGGTCTTTTTCCACGGCCTGACGATACTGCGCCAGCGCCTC  >  NC_002947/2646368‑2646659                                                                                                                                                      |                                                                                                                                                ccAGGCCGAGCATGGCCAGTTGCAGGCAATACAGGCCCAATGACTGGTGGCGCGACAGGCCCAGGCAGCGAAGCAGGGCACTGGCG‑TCCAGCCGGCGTGCAGCATAGCGACTGGCCGACAGTGCCACGGCTACGCCTGCCAGCAATACa                                                                                                                                                 >  2:195122/1‑149 (MQ=255)        gAGCATGGCCAGTTGCAGGCAATACAGGCCCAATGCCTGGTGGCGCGACAGGCCCAGGCAGCGCAGCAGGGCAAAAGCGGTCCAGCCGAAATGCAGCATAGCGACTGGCCGACAGTGCCACGGCTACGCCTGCCAGCAATACAgccac                                                                                                                                            <  1:97854‑M2/148‑6 (MQ=255)         aGCATGGCCAGTTGCAGGCAATACAGGCCCAATGCCTGGTGGCGCGACAGGCCCAGGCAGCGCAGCAGGGCACTGGCG‑TCCAGCCGGCGTGCATCATAGCGACTGGCCGACAGTGCCACGGCTACGCCTGCCAGCAATACAgccaccag                                                                                                                                         >  2:94559‑M2/1‑141 (MQ=255)             tGGCCAGTTGCAGGCAATACAGGCCCAATGCCTGGTGGCGCGACAGGCCCAGGCAGCGCAGCAGGGCACTGGCG‑TCCAGCCGGCGTGCAGCATAGCGACTGGCCGACAGTGCCACGGCTACGCCTGCCAGCAATACAGCCACCAGGCTg                                                                                                                                     <  1:14117/149‑1 (MQ=255)             tGGCCAGTTGCAGGCAATACAGGCCCAATGCCTGGTGGCGCGACAGGCCCAGGCAGCGCAGCAGGGCACTGGCG‑TCCAGCCGGCGTGCAGCATAGCGACTGGCCGACAGTGCCACGGCTACGCCTGCCAGCAATACAGCCACCAGGCTg                                                                                                                                     <  1:200387/149‑1 (MQ=255)                ccAGTTGCAGGCAATACAGGCCCAATGCCTGGTGGCGCGACAGGCCCAGGCAGCGCAGCAGGGCACTGGCG‑TCCAGCCGGCGTGCAGCATAGCGACTGGCCGACAGTGCCACGGCTACGCCTGCCAGCAATACAGCCACCAGGCTGGc                                                                                                                                   >  4:189035/1‑148 (MQ=255)                        aGGCAATACAGGCCCAATGCCTGGTGGCGCGACAGGCCCAGGCAGCGCAGCAGGGCACTGGCG‑TCCAGCCGGCGTGCAGCATAGCGACTGGCCGACAGTGCCACGGCTACGCCTGCCAGCAATACAGCCACCAGGCTGGCCATGTTCAg                                                                                                                          >  2:79854/1‑149 (MQ=255)                          gCAATACAGGCCCAATGCCTGGTGGCGCGACAGGCCCAGGCAGCGCAGCAGGGCACTGGCG‑TCCAGCCGGCGTGCAGCATAGCGACTGGCCGACAGTGCCACGGCTACGCCTGCCAGCAATACAGCCACCAGGCTGGCCATGTTCAgg                                                                                                                         >  5:175237/1‑148 (MQ=255)                           cAATACAGGCCCAATGCCTGGTGGCGCGACAGGCCCAGGCAGCGCAGCAGGGCACTGGCG‑TCCAGCCGGCGTGCAGCATAGCGACTGGCCGACAGTGCCACGGCTACGCCTGCCAGCAATACAGCCACCAGGCTGGCCATGTTCAGGTa                                                                                                                       <  7:71059/149‑1 (MQ=255)                              tACAGGCCCAATGCCTGGTGGCGCGACAGGCCCAGGCAGCGCAGCAGGGCACTGGCG‑TCCAGCCGGCGTGCAGCATAGCGACTGGCCGACAGTGCCACGGCTACGCCTGCCAGCAATACAGCCACCAGGCTGGCCATGTTCAGGTAGCg                                                                                                                    <  4:106813/149‑1 (MQ=255)                               aCAGGCCCAATGCCTGGTGGCGCGACAGGCCCAGGCAGCGCAGCAGGGCACTGGCG‑TCCAGCCGGCGTGCAGCATAGCGACTGGCCGACAGTGCCACGGCTACGCCTGCCAGCAATACAGCCACCAGGCTGGCCATGTTCAGGTAGCGt                                                                                                                   >  6:203400/1‑149 (MQ=255)                                 aGGCCCAATGCCTGGTGGCGCGACAGGCCCAGGCAGCGCAGCAGGGCACTGGCG‑TCCAGCCGGCGTGCAGCATAGCGACTGGCCGACAGTGCCACGGCTACGCCTGCCAGCAATACAGCCACCAGGCTGGCCATGTTCAGGTAGCGTTc                                                                                                                 >  3:262730/1‑149 (MQ=255)                                 aGGCCCAATGCCTGGTGGCGCGACAGGCCCAGGCAGCGCAGCAGGGCACTGGCG‑TCCAGCCGGCGTGCAGCATAGCGACTGGCCGACAGTGCCACGGCTACGCCTGCCAGCAATACAGCCACCAGGCTGGCCATGTTCAGGTAGCGTTc                                                                                                                 <  3:189035/149‑1 (MQ=255)                                   gCCCAATGCCTGGTGGCGCGACAGGCCCAGGCAGCGCAGCAGGGCACTGGCG‑TCCAGCCGGCGTGCAGCATAGCGACTGGCCGACAGTGCCACGGCTACGCCTGCCAGCAATACAGCCACCAGGCTGGCCATGTTCAGGTAGCGTTCgg                                                                                                               >  1:199345/1‑149 (MQ=255)                                             tggtggCGCGACAGGCCCAGGCAGCGCAGCAGGGCACTGGCG‑TCCAGCCGGCGTGCAGCATAGCGACTGGCCGACAGTGCCACGGCTACGCCTGCCAGCAATACAgccaccaggcattgggcctgtattgcctgcaactggccatgctc                                                                                                     <  2:171763‑M2/149‑45 (MQ=255)                                                    gcgACAGGCCCAGGCAGCGCAGCAGGGCACTGGCG‑TCCAGCCGGCGTGCAGCATAGCGACTGGCCGACAGTGCCACGGCTACGCCTGCCAGCAATACAGCCACCAGGCTGGCCATGTTCAGGTAGCGTTCGGCTTTGCCCAGCGcgccg                                                                                              >  4:217092/1‑149 (MQ=255)                                                    gcgACAGGCCCAGGCAGCGCAGCAGGGCACTGGCG‑TCCAGCCGGCGTGCAGCATAGCGACTGGCCGACAGTGCCACGGCTACGCCTGCCAGCAATACAGCCACCAGGCTGGCCATGTTCAGGTAGCGTTCGGCTTTGCCCAGCGcgccg                                                                                              <  6:175237/149‑1 (MQ=255)                                                     cgACAGGCCCAGGCAGCGCAGCAGGGCACTGGCG‑TCCAGCCGGCGTGCAGCATAGCGACTGGCCGACAGTGCCACGGCTACGCCTGCCAGCAATACAGCCACCAGGCTGGCCATGTTCAGGTa                                                                                                                       >  7:139397/1‑123 (MQ=255)                                                       aCAGGCCCAGGCAGCGCAGCAGGGCACTGGCG‑TCCAGCCGGCGTGCAGCATAGCGACTGGCCGACAGTGCCACGGCTACGCCTGCCAGCAATACAGCCACCAGGCTGGCCATGTTCAGGTAGCGTTCGGCTTTGCCCAGCGCgccgcc                                                                                            >  4:68111/1‑148 (MQ=255)                                                         aGGCCCAGGCAGCGCAGCAGGGCACTGGCG‑TCCAGCCGGCGTGCAGCATAGCGACTGGCCGACAGTGCCACGGCTACGCCTGCCAGCAATACAGCCACCAGGCTGGCCATGTTCAGGTAGCGTTCGGCTTTGCCCAGCGCGCCGCCGAt                                                                                         >  8:208174/1‑149 (MQ=255)                                                         aGGCCCAGGCAGCGCAGCAGGGCACTGGCG‑TCCAGCCGGCGTGCAGCATAGCGACTGGCCGACAGTGCCACGGCTACGCCTGCCAGCAATACAGCCACCAGGCTGGCCATGTTCAGGTAGCGTTCGGCTTTGCCCAGCGCGCCGCCGAt                                                                                         <  2:199345/149‑1 (MQ=255)                                                          ggCCCAGGCAGCGCAGCAGGGCACTGGCG‑TCCAGCCGGCGTGCAGCATAGCGACTGGCCGACAGTGCCACGGCTACGCCTGCCAGCAATACAGCCACCAGGCTGGCCATGTTCAGGTAGCGTTCGGCTTTGCCCAGCGCGCCGCCGATc                                                                                        <  5:203400/149‑1 (MQ=255)                                                              cAGGCAGCGCAGCAGGGCACTGGCG‑TCCAGCCGGCGTGCAGCATAGCGACTGGCCGACAGTGCCACGGCTACGCCTGCCAGCAATACAGCCACCAGGCTGGCCATGTTCAGGTAGCGTTCGGCTTTGCCCAGCGCGCCGCCGATCTgtt                                                                                    >  3:182197/1‑149 (MQ=255)                                                              cAGGCAGCGCAGCAGGGCACTGGCG‑TCCAGCCGGCGTGCAGCATAGCGACTGGCCGACAGTGCCACGGCTACGCCTGCCAGCAATACAGCCACCAGGCTGGCCATGTTCAGGTAGCGTTCGGCTTTGCCCAGCGCGCCGCCGATCTgtt                                                                                    <  3:68111/149‑1 (MQ=255)                                                              cAGGCAGCGCAGCAGGGCACTGGCG‑TCCAGCCGGCGTGCAGCATAGCGACTGGCCGACAGTGCCACGGCTACGCCTGCCAGCAATACAGCCACCAGGCTGGCCATGTTCAGGTAGCGTTCGGCTTTGCCCAGCGCGCCGCCGATCTgtt                                                                                    >  3:62288/1‑149 (MQ=255)                                                                  cagcgcagcAGGGCACTGGCG‑TCCAGCCGGCGTGCAGCATAGCGACTGGCCGACAGTGCCACGGCTACGCCTGCCAGCAATACAGCCACCAGGCTGGCCATGTTCAGGTAGCGTTCGGCTTTGCCCAGCGCGCCGCCGAt                                                                                         <  8:130772/140‑1 (MQ=255)                                                                  cagcgcagcAGGGCACTGGCG‑TCCAGCCGGCGTGCAGCATAGCGACTGGCCGACAGTGCCACGGCTACGCCTGCCAGCAATACAGCCACCAGGCTGGCCATGTTCAGGTAGCGTTCGGCTTTGCCCAGCGCGCCGCCGAt                                                                                         >  7:130772/1‑140 (MQ=255)                                                                     cgcagcAGGGCACTGGCG‑TCCAGCCGGCGTGCAGCATAGCGACTGGCCGACAGTGCCACGGCTACGCCTGCCAGCAATACAGCCACCAGGCTGGCCATGTTCAGGTAGCGTTCGGCTTTGCCCAGCGCGCCGCCGATCTGTTGGTTGcc                                                                             <  2:143876/149‑1 (MQ=255)                                                                      gctgcatGGCACTGGCG‑TCCAGCCGGCGTGCAGCATAGCTACTGGCCGACAGTGCCACGGCTAAGCCTGCCAGCAATAGAGCCACCAGGCTGGCCATGTTCAGGTAGCGTTCGGCTTTGCCCAGCGCGCCGCCGATCTGTTGGTTGCCa                                                                            <  1:195122/146‑1 (MQ=255)                                                                          cagGGCACTGGCG‑TCCAGCCGGCGTGCAGCATAGCGACTGGCCGACAGTGCCACGGCTACGCCTGCCAGCAATACAgccaccaggcattgggcctgtattgcctgcaactggccatgctcggcctggtcgctgccctggccggcgcctt                                                                        >  1:171763‑M2/1‑76 (MQ=255)                                                                            gggCACTGGCG‑TCCAGCCGGCGTGCAGCATAGCGACTGGCCGACAGTGCCACGGCTACGCCTGCCAGCAATACAGCCACCAGGCTGGCCATGTTCAGGTAGCGTTCGGCTTTGCCCAGCGCGCCGCCGATCTGTTGGTTGCCATCACgg                                                                      >  6:266358/1‑149 (MQ=255)                                                                                 cTGGCG‑TCCAGCCGGCGTGCAGCATAGCGACTGGCCGACAGTGCCACGGCTACGCCTGCCAGCAATACAGCCACCAGGCTGGCCATGTTCAGGTAGCGTTCGGCTTTGCCCAGCGCGCCGCCGATCTGTTGGTTGCCATCACGGGTGTc                                                                 <  7:208174/149‑1 (MQ=255)                                                                                    gCG‑TCCAGCCGGCGTGCAGCATAGCGACTGGCCGACAGTGCCACGGCTACGCCTGCCAGCAATACAGCCACCAGGCTGGCCATGTTCAGGTAGCGTTCGGCTTTGCCCAGCGCGCCGCCGATCTGTTGGTTGCCATCACGGGTGTCACg                                                              >  6:255558/1‑149 (MQ=255)                                                                                     cG‑TCCAGCCGGCGTGCAGCATAGCGACTGGCCGACAGTGCCACGGCTACGCCTGCCAGCAATACAGCCACCAGGCTGGCCATGTTCAGGTAGCGTTCGGCTTTGCCCAGCGCGCCGCCGATCTGTTGGTTGCCATCACGGGTGTCACGc                                                             <  3:217092/149‑1 (MQ=255)                                                                                         ccAGCCGGCGTGCAGCATAGCGACTGGCCGACAGTGCCACGGCTACGCCTGCCAGCAATACAgccaccaggcattgggcctgtattgcctgcaactggccatgctcggcctggtcgctgccctggccggcgccttgctcggctggctgg                                                          <  3:281037‑M2/149‑88 (MQ=255)                                                                                              cGGCGTGCAGCATAGCGACTGGCCGACAGTGCCACGGCTACGCCTGCCAGCAATACAGCCACCAGGCTGGCCATGTTCAGGTAGCGTTCGGCTTTGCCCAGCGCGCCGCCGATCTGTTGGTTGCCATCACGGGTGTCACGCAGGCGCTg                                                     <  5:266358/149‑1 (MQ=255)                                                                                                  gTGCAGCATAGCGACTGGCCGACAGTGCCACGGCTACGCCTGCCAGCAATACAGCCACCAGGCTGGCCATGTTCAGGTAGCGTTCGGCTTTGCCCAGCGCGCCGCCGATCTGTTGGTTGCCATCACGGGTGTCACGCTGgcgcagtatc                                                 >  8:169153/1‑143 (MQ=255)                                                                                                  gTGCAGCATAGCGACTGGCCGACAGTGCCACGGCTACGCCTGCCAGCAATACAGCCACCAGGCTGGCCATGTTCAGGTAGCGTTCGGCTTTGCCCAGCGCGCCGCCGATCTGTTGGTTGCCATCACGGGTGTCACGCAGGCGCTGGTTg                                                 >  6:282777/1‑149 (MQ=255)                                                                                                     cagcaTAGCGACTGGCCGACAGTGCCACGGCTACGCCTGCCAGCAATACAGCCACCAGGCTGGCCATGTTCAGGTAGCGTTCGGCTTTGCCCAGCGCGCCGCCGATCTGTTGGTTGCCATCACGGGTGTCACGCAGGCGCTGGTTggc                                               <  2:97854/148‑1 (MQ=255)                                                                                                      agcaTAGCGACTGGCCGACAGTGCCACGGCTACGCCTGCCAGCAATACAGCCACCAGGCTGGCCATGTTCAGGTAGCGTTCGGCTTTGCCCAGCGCGCCGCCGATCTGTTGGTTGCCATCGCGGGTGTCACGCAGGCGCTGGTTggcgg                                             >  6:150991/1‑149 (MQ=255)                                                                                                            gCGACTGGCCGACAGTGCCACGGCTACGCCTGCCAGCAATACAGCCACCAGGCTGGCCATGTTCAGGTAGCGTTCGGCTTTGCCCAGCGCGCCGCCGATCTGTTGGTTGCCATCACGGGTGTCACGCAGGCGCTGGTTGGCGGCCAgg                                        <  4:23129/148‑1 (MQ=255)                                                                                                             cGACTGGCCGACAGTGCCACGGCTACGCCTGCCAGCAATACAgccaccaggcattgggcctgtattgcctgcaactggccatgctcggcctggtcgctgccctggccggcgccttgctcggctggctggctcagctgggctgttccgcc                                      >  4:281037‑M2/1‑42 (MQ=255)                                                                                                                     cGACAGTGCCACGGCTACGCCTGCCCGCAATACAGCCACCAGGCTGGCCATGTTCAGGTAGCGTTCGGCATTGCCCAGCGCGCCGGCGATCTGTTGGTTGCCATCACGGGTGTCACGCAGGCGCTGGTTGGCGGCCAGGTCTTTTTCCa                              >  5:180617/1‑149 (MQ=255)                                                                                                                      gACAGTGCCACGGCTACGCCTGCCAGCAATACAGCCACCAGGCTGGCCATGTTCAGGTAGCGTTCGGCTTTGCCCAGCGCGCCGCCGATCTGTTGGTTGCCATCACGGGTGTCACGCAGGCGCTGGTTGGCGGCCAGGTCTTTTTCCAc                             <  6:240885/149‑1 (MQ=255)                                                                                                                             ccACGGCTACGCCTGCCAGCAATACAGCCACCAGGCTGGCCATGTTCAGGTAGCGTTCGGCTTTGCCCAGCGCGCCGCCGATCTGTTGGTTGCCATCACGGGTGTCACGCAGGCGCTGGTTGGCGGCCAGGTCTTTTTCCACGGCCTGa                      >  6:226322/1‑149 (MQ=255)                                                                                                                                      cGCCTGCCAGCAATACAGCCACCAGGCTGGCCATGTTCAGGTAGCGTTCGGCTTTGCCCAGCGCGCCGCCGATCTGTTGGTTGCCATCGCGGGTGTCACGCAGGCGCTGGTTGGCGGCCAGGTCTTTTTCCACGGCCTGACGATACt               <  5:150991/147‑1 (MQ=255)                                                                                                                                         cTGCCAGCAATACAGCCACCAGGCTGGCCATGTTCAGGTAGCGTTCGGCTTTGCCCAGCGCGCCGCCGATCTGTTGGTTGCCATCACGGGTGTCACGCAGGCGCTGGTTGGCGGCCAGGTCttttt                                 <  6:298590/126‑1 (MQ=255)                                                                                                                                         cTGCCAGCAATACAGCCACCAGGCTGGCCATGTTCAGGTAGCGTTCGGCTTTGCCCAGCGCGCCGCCGATCTGTTGGTTGCCATCACGGGTGTCACGCAGGCGCTGGTTGGCGGCCAGGTCttttt                                 >  5:298590/1‑126 (MQ=255)                                                                                                                                          tGCCAGCAATACAGCCACCAGGCTGGCCATGTTCAGGTAGCGTTCGGCTTTGCCCAGCGCGCCGCCGATCTGTTGGTTGCCATCACGGGTGTCACGCAGgcgc                                                       >  1:115104/1‑103 (MQ=255)                                                                                                                                          tGCCAGCAATACAGCCACCAGGCTGGCCATGTTCAGGTAGCGTTCGGCTTTGCCCAGCGCGCCGCCGATCTGTTGGTTGCCATCACGGGTGTCACGCAGgcgc                                                       <  2:115104/103‑1 (MQ=255)                                                                                                                                                 aaTACAGCCACCAGGCTGGCCATGTTCAGGTAGCGTGCGGCTTTGCCCAGCGCGCCGCCGATCTGTTGGTTGCCATCACGGGTGTCACGCAGGCGCTGGTTGGCGGCCAGGTCTTTTTCCACGGCCTGACGATACTGCGCCAGCGCCTc  <  4:182197/149‑1 (MQ=255)                                                                                                                                                      |                                                                                                                                                CCAGGCCGAGCATGGCCAGTTGCAGGCAATACAGGCCCAATGCCTGGTGGCGCGACAGGCCCAGGCAGCGCAGCAGGGCACTGGCG‑TCCAGCCGGCGTGCAGCATAGCGACTGGCCGACAGTGCCACGGCTACGCCTGCCAGCAATACAGCCACCAGGCTGGCCATGTTCAGGTAGCGTTCGGCTTTGCCCAGCGCGCCGCCGATCTGTTGGTTGCCATCACGGGTGTCACGCAGGCGCTGGTTGGCGGCCAGGTCTTTTTCCACGGCCTGACGATACTGCGCCAGCGCCTC  >  NC_002947/2646368‑2646659

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.