New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3039828 =	40 (0.810)	3 (0.060)	3/244	NT	8.4%	coding (913/1344 nt)	PP_2651	MFS transporter
	?	NC_002947	3039879 =	27 (0.570)					coding (964/1344 nt)	PP_2651	MFS transporter

CTGGGGCGCAGTACTGGGCTTCATGGGGGTGATCTACATGCTGTGGCTGCACCTGACCTGGCTGCCGGGCTACTTCGAACGCGAGCATGGCTTGAGCCTGTACCAGACCGCCTGGGTGGTTTCGCTGGCCTATGTGTTCGGCGCGTTGGGCACCATTGTCGCGGGCCGCATCTGCGACCGCCTGGTGAAGCAAGGTGCCAGTGTGCTGGGTAGCCGCAAGCGGGTTGTCGTGACTGCGTTGCTCGCGGCGGCTGCATTCACCGTTCCCCTGTCGTTCGGTAGCG  >  NC_002947/3039680‑3039963                                                                                                                                                     |                                                                                                                                        cTGGGGCGCAGTACTGGGCTTCATGGGGGTGATCTACATGCTGTGGCTGCACCTGACCTGGCTGCCGGGCTACTTCGAACGCGAGCATGGCTTGAGCCTGTACCAGACCGCCTGGGTGGTTTCGCTGGCCTATGTGTTCGGCGCGTTgg                                                                                                                                         >  8:180385/1‑149 (MQ=255)   gagctggccatgttcacgctgaacagcgcgcaacacagcagcgccacactgagcaggaagccgctaccgaacgacaggggaacggtgaatgcagccgccgcgagcaacgcagtcacgacaacccgcttgcggctacccagcacactgg                                                                                                                                        >  3:247499‑M1/147‑148 (MQ=255)       cgcAGTACTGGGCTTCATGGGGGTGATCTACATGCTGTGGCTGCACCTGACCTGGGTGCCGGGCTACTTCGAACGCGAGCATGGCTTGAGCCTGTACCAGACCGGCTGGGTGGTTTCGCTGGCCTATGTGTTCGGCGCGTTGGGCACCa                                                                                                                                   >  2:196641/1‑149 (MQ=255)            tACTGGGCTTCATGGGGGTGATCTACATGCTGTGGCTGCACCTGACCTGGCTGCCGGGCTACTTCGAACGAGAGCATGGCTTGAGCCTGTACAAGACCGCCTGGGTGGTTTCGCTGGCCTATGTGTTCGGCGCGTTGGGCACCATTGTc                                                                                                                              >  7:299263/1‑149 (MQ=255)                   cTTCATGGGGGTGATCTACATGCTGTGGCTGCACCTGACCTGGCTGCCGGGCTACTTCGAACGCGAGCATGGCTTGAGCCTGTACCAGACCGCCTGGGTGGTTTCGCTGGCCTATGTGTTCGGCGCGTTGGGCACCATTGTCGCGGGcc                                                                                                                       <  3:207780/149‑1 (MQ=255)                   cTTCATGGGGGTGATCTACATGCTGTGGCTGCACCTGACCTGGCTGCCGGGCTACTTCGAACGCGAGCATGGCTTGAGCCTGTACCAGACCGCCTGGGTGGTTTCGCTGGCCTATGTGTTCGGCGCGTTGGGCACCATTGTCGCGGGcc                                                                                                                       <  1:165451/149‑1 (MQ=255)                      cATGGGGGTGATCTACATGCTGTGGCTGCACCTGACCTGGCTGCCGGGCTACTTCGAACGCGAGCATGGCTTGAGCCTGTACCAGACCGCCTGGGTGGTTTCGCTGGCCTATGTGTTCGGCGCGTTGGGCACCATTGTCGCGGGCCGc                                                                                                                     <  4:280107/148‑1 (MQ=255)                       aTGGGGGTTATCTACATGCTGTGGCTGCACCTGACCTGGCTGCCGGGCTACTTCGAACGCGAGCATGGCTTGAGCCTGTACCAGACCGCCTGGGTGGTTTCGCTGGCCTATGTGTTCGGCGCGTTGGGCACCATTGTCGCGGGCCGCAt                                                                                                                   <  8:75740/149‑1 (MQ=255)                                     cATGCTGGGGCTGCAGCTGACCTGCCTGCCGGGCTTCTTCGAACGCGAGCATGGCTTGAGCCTGTACCAGACCGCCTGGGTGGTTTCGCTGGCCTATGTGTTCGGCGCGGTGGGCACCATTGTCGGGGGCCGCATCTGCGACCGCCTgg                                                                                                     <  3:238631/149‑1 (MQ=255)                                      aTGCTGTGGCTGCACCTGACCTGGCTGCCGGGCTACTTCGAACGCGAGCATGGCTTGAGCCTGTACCAGACCGCCTGGGTGGTTTCGCTGGCCTATGTGTTCGGCGCGTTGGGCACCATTGTCGCGGGCCGCATCTGCGACCGCCTGGt                                                                                                    >  5:199866/1‑149 (MQ=255)                                            tgGCTGCACCTGACCTGGCTGCCGGGCTACTTCGAACGCGAGCATGGCTTGAGCCTGTACCAGACCGCCTGGGTGGTTTCGCTGGCCTATGTGTTCGGCGCGTTGGGCACCATTGTCGCGGGCCGCATCTGCGACCGCCTGGTGAAGc                                                                                               <  7:180385/148‑1 (MQ=255)                                             gccacactgagcaggaagccgctaccgaacgacaggggaacggtgaatgcagccgccgcgagcaacgcagtcacgacaacccgcttgcggctacccagcacactGGCACCATTGTCGCGGGCCGCATCTGCGACCGCCTGGTGAAGc                                                                                               <  1:89483‑M1/43‑1 (MQ=255)                                              gCTGCACCTGACCTGGCTGCCGGGCTACTTCGAACGCGAGCATGGCTTGAGCCTGTACCAGACCGCCTGGGTGGTTTCGCTGGCCTATGTGTTCGGCGCGTTGGGCACCATTGTCGCGGGCCGCATCTGCGACCGCCTGGTGAAGCAAg                                                                                            <  4:307544/149‑1 (MQ=255)                                                  cACCTGACCTGGCTGCCGGGCTACTTCGAACGCGAGCATGGCTTGAGCCTGTACCAGACCGCCTGGGTGGTTTCGCTGGCCTATGTGTTCGGCGCGTTGGGCACCATTGTCGCGGGCCGCATCTGCGACCGCCTGGTGAAGCAAGGt                                                                                          <  6:199866/147‑1 (MQ=255)                                                   acctgacctgGCTGCCGGGCTACTTCGAACGCGAGCATGGCTTGAGCCTGTACCAGACCGCCTGGGTGGTTTCGCTGGCCTATGTGTTCGGCGCGTTGGGCACCATTGTCGCGGGCCGCATCTGCGACCGCCTGGTGAAGCAAGGTGc                                                                                        >  6:196182/1‑148 (MQ=255)                                                       gcaggaagccgctaccgaacgacaggggaacggtgaatgcagccgccgcgagcaacgcagtcacgacaacccgcttgcggctacccagcacactGGCACCATTGTCGCGGGCCGCATCTGCGACCGCCTGGTGAAGCAAGGTGCCAgt                                                                                    >  2:282710‑M1/95‑148 (MQ=255)                                                          ggaagccgctaccgaacgacaggggaacggtgaatgcagccgccgcgagcaacgcagtcacgacaacccgcttgcggctacccagcacactGGCACCATTGTCGCGGGCCGCATCTGCGACCGCCTGGTGAAGCAAGGTGCCAGTGTGc                                                                                >  2:89483‑M1/92‑149 (MQ=255)                                                          ctgGCTGCCGGGCTACTTCGAACGCGAGCATGGCTTGAGCCTGTACCAGACCGCCTGGGTGGTTTCGCTGGCCTATGTGTTCGGCGCGTTGGGCACCATTGTCGCGGGCCGc                                                                                                                     >  4:90159/1‑112 (MQ=255)                                                          ctgGCTGCCGGGCTACTTCGAACGCGAGCATGGCTTGAGCCTGTACCAGACCGCCTGGGTGGTTTCGCTGGCCTATGTGTTCGGCGCGTTGGGCACCATTGTCGCGGGCCGc                                                                                                                     <  3:90159/112‑1 (MQ=255)                                                                   gggCTACTTCGAACGCGAGCATGGCTTGAGCCTGTACCAGACCGCCTGGGTGGTTTCGCTGGCCTATGTGTTCGGCGCGTTGGGCACCATTGTCGCGGGCCGCATCTGCGACCGCCTGGTGAAGCAAGGTGCCAGTGTGCTggg                                                                            >  2:285972/1‑144 (MQ=255)                                                                   gggCTACTTCGAACGCGAGCATGGCTTGAGCCTGTACCAGACCGCCTGGGTGGTTTCGCTGGCCTATGTGTTCGGCGCGTTGGGCACCATTGTCGCGGGCCGCATCTGCGACCGCCTGGTGAAGCAAGGTGCCAGTGTGCTggg                                                                            <  1:285972/144‑1 (MQ=255)                                                                          ttCGAACGCGAGCATGGCTTGAGCCTGTACCAGACCGCCTGGGTGGTTTCGCTGGCCTATGTGTTCGGCGCGTTGGGCACCATTGTCGCGGGCCGCATCTGCGACCGCCTGGTGAAGCAAGGTGCCAGTGTGCTggg                                                                            <  4:12181/137‑1 (MQ=255)                                                                          ttCGAACGCGAGCATGGCTTGAGCCTGTACCAGACCGCCTGGGTGGTTTCGCTGGCCTATGTGTTCGGCGCGTTGGGCACCATTGTCGCGGGCCGCATCTGCGACCGCCTGGTGAAGCAAGGTGCCAGTGTGCTggg                                                                            >  3:12181/1‑137 (MQ=255)                                                                                cgcgAGCATGCCAAGAGACTGAATCTGACCGCCTGGCTGGTTTCGCTCGCCTAACTGTACGGCGCGATGGGCACCATTGTCGCCGGCCGCATCTTCGACCGACTGGTGAAGCAAGGTGCCAGAGTCCAGCGTAGACGCAAGCGGCTTg                                                           >  4:72177/1‑148 (MQ=255)                                                                                   gAGCATGGCTTGAGCCTGTACCAGACCGCCTGGGTGGTTTCGCTGGCCTATGTGTTCGGCGCGTTGGGCACCATTGTCGCGGGCCGCATCTGCGACCGCCTGGTGAAGCAAGGTGCCAGTGTGCTGGGTAGCCGCAAGCGGGTTGTCGt                                                       >  2:2289/1‑149 (MQ=255)                                                                                           cTTGAGCCTGTACCAGACCGCCTGGGTGGTTTCGCTGGCCTATGTGTTCGGCGCGTTGGGCACCATTGTCGCGGGCCGCATCTGCGACCGCCTGGTGAAGCAAGGTGCCAGTGTGCTGGGTAGCCGCAAGCGGGTTGTCGTGACTGCGt                                               <  3:240673/149‑1 (MQ=255)                                                                                            ttGAGCCTGTACCAGACCGCCTGAGTGGTTTCGCTGGCCTATGTGTTCGGCGCGTTGGGCACCATTGTCGCGGGCCGCATCTGCGACCGCCTGGTGAAGCAAGGTGCCAGTGTGCTGGGTAGCCGCAAGCGGGTTGTCGTGACTGCGtt                                              >  1:34140/1‑149 (MQ=255)                                                                                                     tACCAGACCGCCTGGGTGGTTTCGCTGGCCTATGTGTTCGGCGCGTTGGGCACCATTGTCGCGGGCCGCATCTGCGACCGCCTGGTGAAGCAAGGTGCCAGTGTGCTGGGTAGCCGCAAGCGGGTTGTCGTGACTGCGTTGCTCgcggc                                     >  5:182798/1‑149 (MQ=255)                                                                                                       ccAGACCGCCTGGGTGGTTTCGCTGGCCTATGTGTTCGGCGCGTTGGGCACCATTGTCGCGGGCCGCATCTGCGACCGCCTGGTGAAGCAAGGt                                                                                          >  4:14932/1‑94 (MQ=255)                                                                                                       ccAGACCGCCTGGGTGGTTTCGCTGGCCTATGTGTTCGGCGCGTTGGGCACCATTGTCGCGGGCCGCATCTGCGACCGCCTGGTGAAGCAAGGt                                                                                          <  3:14932/94‑1 (MQ=255)                                                                                                         aGACCGCCTGGGTGGTTTCGCTGGCCTATGTGTTCGGCGCGTTGGGCACCATTGTCGCGGGCCGCATCTGCGACCGCCTGGTGAAGCAAGGTGCCAGTGTGCTGGGTAGCCGCAAGCGGGTTGTCGTGACTGCGTTGCTCGCGGCGGCt                                 <  1:196641/149‑1 (MQ=255)                                                                                                              gCCTGGGTGGTTTCGCTGGCCTATGTGTTCGGCGCGTTGGGCACCATTGTCGCGGGCCGCATCTGCGACCGCCTGGTGAAGCAAGGTGCCAGTGTGCTGGGTAGCCGCaa                                                                   <  3:17110/110‑1 (MQ=255)                                                                                                              gCCTGGGTGGTTTCGCTGGCCTATGTGTTCGGCGCGTTGGGCACCATTGTCGCGGGCCGCATCTGCGACCGCCTGGTGAAGCAAGGTGCCAGTGTGCTGGGTAGCCGCaa                                                                   >  4:17110/1‑110 (MQ=255)                                                                                                                cTGGGTGGTTTCGCTGGCCTATGTGTTCGGCGCGTTGGGCACCATTGTCGCGGGCCGCATCTGCGACCGCCTgg                                                                                                     >  7:73519/1‑74 (MQ=255)                                                                                                                cTGGGTGGTTTCGCTGGCCTATGTGTTCGGCGCGTTGGGCACCATTGTCGCGGGCCGCATCTGCGACCGCCTgg                                                                                                     <  8:73519/74‑1 (MQ=255)                                                                                                                  gggTGGTTTCGCTGGCCTATGTGTTCGGCGCGTTGGGCACCATTGTCGCGGGCCGCATCTGCGACCGCCTGGTGAAGCAAGGTGCCAGTGTGCTGGGTAGCCGCAAGCGGGTTGTCGTGACTGCGTTGCTCGCGGCGGCTGCATTCAcc                        >  7:244140/1‑149 (MQ=255)                                                                                                                   ggtggtTTCGCTGGCCTATGTGTTCGGCGCGTTGGGCACCATTGTCGCGGGCCGCATCTGCGACCGCCTGGTGAAGCAAGGTGCCAGTGTGCTGGGTAGCCGCAAGCGGGTTGTCGTGACTGCGTTGCTCGCGGCGGCTGCATTCAc                         <  5:196182/147‑1 (MQ=255)                                                                                                                   ggtggtTTCGCTGGCCTATGTGTTCGGCGCGTTGGGCACCATTGTCGCGGGCCGCATCTGCGACCGCCTGGTGAAGCAAGGTGCCAGTGTGCTGGGTAGCCGCAAGCGGGTTGTCGTGACTGCGTTGCTCGCGGCGGCTGCATTCACCg                       >  4:176046/1‑149 (MQ=255)                                                                                                                      ggtTTCGCTGGCCTATGTGTTCGGCGCGTTGGGCACCATTGTCGCGGGCCGCATCTGCGACCGCCTGGTGAAGCAAGGTGCCAGTGTGCTGGGTAGCCGCAAGCGGGTTGTCGTGACTGCGTTGCTCGCGGCGGCTGCATTCACCGTTc                    >  5:22360/1‑149 (MQ=255)                                                                                                                      ggtTTCGCTGGCCTATGTGTTCGGCGCGTTGGGCACCATTGTCGCGGGCCGCATCTGCGACCGCCTGGTGAAGCAAGGTGCCAGTGTGCTGGGTAGCCGCAAGCGGGTTGTCGTGACTGCGTTGCTCGCGGCGGCTGCATTCACCGTTc                    <  8:244140/149‑1 (MQ=255)                                                                                                                       gtTTCGCTGGCCTATGTGTTCGGCGCGTTGGGCACCATTGTCGCGGGCCGCATCTGCGACCGCCTGGTGAAGCAAGGTGCCAGTGTGCTGGGTAGCCGCAAGCGGGTTGTCGTGACTGCGTTGCTCGCGGCGGCTGCATTCACCGTTcc                   <  1:2289/149‑1 (MQ=255)                                                                                                                        tttCGCTGGCCTATGTGTTCGGCGCGTTGGGCACCATTGTCGCGGGCCGCATCTGCGACCGCCTGGTGAAGCAAGGTGCCAGTGTGCTGGGTAGCCGCAAGCGGGTTGTCGTGACTGCGTTGCTCGCGGCGGCTGCATTCACCGTTccc                  <  3:176046/149‑1 (MQ=255)                                                                                                                             cTGGCCTATGTGTTCGGCGCGTTGGGCACCATTGTCGCGGGCCGCATCTGCGACCGCCTGGTGAAGCAAGGTGCCAGTGTGCTGGGTAGCCGCAAGCGGGTTGTCGTGACTGCGTTGCTCGCGGCGGCTGCATTCACCGTTCCCCTGTc             <  6:182798/149‑1 (MQ=255)                                                                                                                                       tgtTCGGCGCGTTGGGCACCATTGTCGCGGGCCGCATCTGCGACCGCCTGGTGAAGCAAGGTGCCAGTGTGCTGGGTAGCCGCAAGCGGGTTGTCGTGACTGCGTTGCTCGCGGCGGCTGCATTCACCGTTCCCCTGTCGTTCGGTAGc   >  1:283521/1‑149 (MQ=255)                                                                                                                                        gtTCGGCGCGTTGGGCACCATTGTCGCGGGCCGCATCTGCGACCGCCTGGTGAAGCAAGGTGCCAGTGTGCTGGGTAGCCGCAAGCGGGTTGTCGTGACTGCGTTGCTCGCGGCGGCTGCATTCACCGTTCCCCTGTCGTTCGGTAGCg  >  3:188986/1‑149 (MQ=255)                                                                                                                                                     |                                                                                                                                        CTGGGGCGCAGTACTGGGCTTCATGGGGGTGATCTACATGCTGTGGCTGCACCTGACCTGGCTGCCGGGCTACTTCGAACGCGAGCATGGCTTGAGCCTGTACCAGACCGCCTGGGTGGTTTCGCTGGCCTATGTGTTCGGCGCGTTGGGCACCATTGTCGCGGGCCGCATCTGCGACCGCCTGGTGAAGCAAGGTGCCAGTGTGCTGGGTAGCCGCAAGCGGGTTGTCGTGACTGCGTTGCTCGCGGCGGCTGCATTCACCGTTCCCCTGTCGTTCGGTAGCG  >  NC_002947/3039680‑3039963

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.