New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3041581	35 (0.710)	4 (0.090)	4/242	NT	11.3%	coding (411/819 nt)	PP_2653	Cro/CI family transcriptional regulator
	?	NC_002947	= 3041607	30 (0.640)					coding (385/819 nt)	PP_2653	Cro/CI family transcriptional regulator

CGGCCTCCCTGGAGGCACGTTGCCAGGCAGCAGCGCGGATTTCCGGCGCGTTGGCCAGGTGATCACCCAGACCACCGGGGCACAGCAGTGTCTGCAGCAGGTTGAGGCCGGTTGCCGGCTGTGCGCTGACACCGGCCATCGCCAGCAGCAGCCCGGTACTGGCGTTGGCGGCGATGACGTCCCAGTGGCTGTCGATGACGATCGCCGGAGCGGGGTTGTTCACCTGCAGAATATGCTCGATGGCAGTATTCACCAAGGCCAGTTCAGGCGCATCGAGCGGCGTGGCGGC  >  NC_002947/3041439‑3041727                                                                                                                                               |                                                                                                                                                   cGGCCTCCCTGGAGGCACGTTGCCAGGCAGCAGCGCGGATTTCCGGCGCGTTGGCCAGGTGATCACCCAGACCACCGGGGCACAGCAGTGTCTGCAGCAGGTTGAGGCCGGTTGCCGGCTGTGCGCTGACACCGGCCATCGCcagcag                                                                                                                                               <  6:8191/148‑1 (MQ=255)     cTCCCTGGAGGCACGTTGCCAGGCAGCAGCGCGGATTTCCGGCGCGTTGGCCAGGTGATCACCCAGACCACCGGGGCACAGCAGTGTCTGCAGCAGGTTGAGGCCGGTTGCCGGCTGTGCGCTGACACCGGCCATCGCCgccaacgc                                                                                                                                            >  5:68401‑M1/1‑139 (MQ=255)        ccTGGAGGCACGTTGCCAGGCAGCAGCGCGGATTTCCGGCGCGTTGGCCAGGTGATCACCCAGACCACCGGGGCACAGCAGTGTCTGCAGCAGGTTGAGGCCGGTTGCCGGCTGTGCGCTGACACCGGCCATCGCCAGCAGCAGCCCgg                                                                                                                                       >  2:8075/1‑149 (MQ=255)        ccTGGAGGCACGTTGCCAGGCAGCAGCGCGGATTTCCGGCGCGTTGGCCAGGTGATCACCCAGACCACCGGGGCACAGCAGTGTCTGCAGCAGGTTGAGGCCGGTTGCCGGCTGTGCGCTGACACCGGCCATCGCCAGCAGCAGCCCgg                                                                                                                                       >  6:44044/1‑149 (MQ=255)          tGGAGGCACGTTGCCAGGCAGCAGCGCGGATTTCCGGCGCGTTGGCCAGGTGATCACCCAGACCACCGGGGCACAGCAGTGTCTGCAGCAGGTTGAGGCCGCTTGCCGGCTGTGCGCTGACACCGGCCATCGCCAGCAGCAGCCCGGTa                                                                                                                                     >  8:56816/1‑149 (MQ=255)            gAGGCACGTTGCCAGGCAGCAGCGCGGATTTCCGGCGCGTTGGCCAGGTGATCACCTAGACCACCGGGGCACAGCAGTGTCTGCAGCAGGTTGAGGCCGGTTGCCGGCTGTGCGCTGACACCGGCCATCGCCAGCAGCAGCCCGGTa                                                                                                                                     <  6:199806/147‑1 (MQ=255)             aGGCACGTTGCCAGGCAGGAGCGCGGCTTTCCGGCGCGTTGGCCCTGTGATCACCCAGCCCAGCGGGGCACAGCAGTGTCTGCAGCAGGTTGAGGCCGGTTGCCGGCTGTGCGCTGACACCGGCCATCGCCAGCAGCAGCCCGGTACTg                                                                                                                                  <  4:265144/149‑1 (MQ=255)                        cAGGCAGCAGCGCGGATTTCCGGCGCGTTGGCCAGGTGATCACCCAGACCACCGGGGCACAGCAGTGTCTGCAGCAGGTTGAGGCCGGTTGCCGGCTGTGCGCTGACACCGGCCATCGCCAGCAGCAGCCCGGTACTGGCGTTGGCggc                                                                                                                       <  6:181527‑M2/149‑4 (MQ=255)                             agcagcGCGGATTTCCGGCGCGTTGGCCAGGTGATCACCCAGACCACCGGGGCACAGCAGTGTCTGCAGCAGGTTGAGGCCGGTTGCCGGCTGTGCGCTGACACCGGCCATCGCCgccaacgccagtaccgggctgctgctggcgatgg                                                                                                                  <  6:68401‑M1/149‑35 (MQ=255)                              gcagcGCGGATTTCCGGCGCGTTGGCCAGGTGATCACCCAGACCACCGGGGCACAGCAGTGTCTGCAGCAGGTTGAGGCCGGTTGCCGGCTGTGCGCTGACACCGGCCATCGCCAGCAGCAGCCCGGTACTGGCGTTGGCGGCGATGAc                                                                                                                 >  8:68972/1‑149 (MQ=255)                                agcGCGGATTTCCGGCGCGTTGGCCAGGTGATCACCCAGACCACCGGGGCACAGCAGTGTCTGCAGCAGGTTGAGGCCGGTTGCCGGCTGTGCGCTGACACCGGCCATCGCCAGCAGCAGCCCGGTACTGGCGTTGGCGGCGATGACGt                                                                                                               <  1:8075/149‑1 (MQ=255)                                 gcgcGGATTTCCGGCGCGTTGGCCAGGTGATCACCCAGACCACCGGGGCACAGCAGTGTCTGCAGCAGGTTGAGGCCGGTTGCCGGCTGTGCGCTGACACCGGCCATCGCCgccaacgccagtaccgggctgctgctggcgatggcc                                                                                                                >  7:117957‑M1/1‑111 (MQ=255)                                 gcgcGGATTTCCGGCGCGTTGGCCAGGTGATCACCCAGACCACCGGGGCACAGCAGTGTCTGCAGCAGGTTGAGGCCGGTTGCCGGCTGTGCGCTGACACCGGCCATCGCCgccaacgccagtaccgggctgctgctggcgatggcc                                                                                                                <  8:117957‑M1/147‑37 (MQ=255)                                  cgcgGATTTCCGGCGCGTTGGCCAGGTGATCACCCAGACCACCGGGGCACAGCAGTGTCTGCAGCAGGTTGAGGCCGGTTGCCGGCTGTGCGCTGACACCGGCCATCGCCAGCAGCAGCCCGGTACTGGCGTTGGCGGCGATGACGTcc                                                                                                             <  7:68972/149‑1 (MQ=255)                                        tttCCGGCGCGTTGGCCAGGTGATCACCCAGACCACCGGGGCACAGCAGTGTCTGCAGCAGGTTGAGGCCGGTTGCCGGCTGTGCGCTGACACCGGCCATCGCCAGCAGCAGCCCGGTACTGGCGTTGGCGGCGATGACGTc                                                                                                              <  1:116120/142‑1 (MQ=255)                                        tttCCGGCGCGTTGGCCAGGTGATCACCCAGACCACCGGGGCACAGCAGTGTCTGCAGCAGGTTGAGGCCGGTTGCCGGCTGTGCGCTGACACCGGCCATCGCCAGCAGCAGCCCGGTACTGGCGTTGGCGGCGATGACGTc                                                                                                              >  2:116120/1‑142 (MQ=255)                                        tttCCGGCGCGTTGGCCAGGTGATCACCCAGACCACCGGGGCACAGCAGTGTCTGCAGCAGGTTGAGGCCGGTTGCCGGCTGTGCGCTGACACCGGCCATCGCCAGCAGCAGCCCGGTACTGGCGTTGGCGGCGATGACGTCCCAGTgg                                                                                                       >  3:92968/1‑149 (MQ=255)                                         ttCCGGCGCGTTGTCCAGGTGATCCCCCAGACCACCGGGGCACAGCAGTGTCTGCAGCAGGTTGAGGCCGGTTTCCGGCTGTGCGCTGACACCGGCCAGCGCCAGCAGAAGCGCGGTACGGGCGTTGGCGGCGATGACGTCCCTGTGGc                                                                                                      >  5:182316/1‑149 (MQ=255)                                            cGGCGCGTTGGCCAGGTGATCACCCAGACCACCGGGGCACAGCAGTGTCTGCAGCAGGTTGAGGCCGGTTGCCGGCTGTGCGCTGACACCGGCCATCGCCAGCAGCAGCCCGGTACTGGCGTTGGCGGCGATGACGTCCCAGTGGCTGt                                                                                                   >  7:36626/1‑149 (MQ=255)                                                   ttGGCCAGGTGATCACGCAGACCACCGGGGCACAGCAGTGTCTGCAGCAGGTTGAGGCCGGTTGCCGGCTGTGCGCTGACACCGGCCATCGCCAGCAGCAGCCCGGTACTGGCGTTGGCGGCGATGACGTCCCAGTGGCTGTCGATGAc                                                                                            <  7:56816/149‑1 (MQ=255)                                                         aGGTGATCACCCAGACCACCGGGGCACAGCAGTGTCTGCAGCAGGTTGAGGCCGGTTGCCGGCTGTGCGCTGACACCGGCCATCGCCAGCAGCAGCCCGGTACTGGCGTTGGCGGCGATGACGTCCCAGTGGCTGTCGATGACGATCGc                                                                                      <  5:44044/149‑1 (MQ=255)                                                               tCACCCAGACCACCGGGGCACAGCAGTGTCTGCAGCAGGTTGAGGCCGGTTGCCGGCTGTGCGCTGACACCGGCCATCGCCAGCAGCAGCCCGGTACTGGCGTTGGCGGCGATGACGTCCCAGTGGCTGTCGATGACGATCGCCGGAGc                                                                                >  5:214258/1‑149 (MQ=255)                                                                cACCCAGACCACCGGGGCACAGCAGTGTCTGCAGCAGGTTGAGGCCGGTTGCCGGCTGTGCGCTGACACCGGCCATCGCCAGCAGCAGCCCGGTACTGGCGTTGGCGGCGATGACGTCCCAGTGGCTGTCGATGACGATCGCCGGAGCg                                                                               >  6:140004/1‑149 (MQ=255)                                                                  cccAGACCACCGGGGCACAGCAGTGTCTGCAGCAGGTTGAGGCCGGTTGCCGGCTGTGCGCTGACACCGGCCATCGCca                                                                                                                                                   >  8:137057/1‑79 (MQ=255)                                                                  cccAGACCACCGGGGCACAGCAGTGTCTGCAGCAGGTTGAGGCCGGTTGCCGGCTGTGCGCTGACACCGGCCATCGCca                                                                                                                                                   <  7:137057/79‑1 (MQ=255)                                                                   ccAGACCACCGGGGCACAGCAGTGTCTGCAGCAGGTTGAGGCCGGTTGCCGGCTGTGCGCTGACACCGGCCATCGCCAGCAGCAGCCCGGTACTGGCGTTGGCGGCGATGACGTCCCAGTGGCTGTCGATGACGATCGCCGGAGCgggg                                                                            <  6:214258/149‑1 (MQ=255)                                                                     aGACCACCGGGGCACAGCAGTGTCTGCAGCAGGTTGAGGCCGGTTGCCGGCTGTGCGCTGACACCGGCCATCGCCAGCAGCAGCCCGGTACTGGCGTTGGCGGCGATGACGTCCCAGTGGCTGTCGATGACGATCGCCGGAGCGGGgtt                                                                          <  5:140004/149‑1 (MQ=255)                                                                     aGACCACCGGGGCACAGCAGTGTCTGCAGCAGGTTGAGGCCGGTTGCCGGCTGTGCGCTGACACCGGCCATCGCCAGCAGCAGCCCGGTACTGGCGTTGGCGGCGATGACGTCCCAGTGGCTGTCGATGACGATCGCCGGAGCGGGgtt                                                                          >  4:288727/1‑149 (MQ=255)                                                                                gCACAGCAGTGTCTGCAGCAGGTTGAGGCCGGTTGCCGGCTGTGCGCTGACACCGGCCATCGCCAGCAGCAGCCCGGTACTGGCGTTGGCGGCGATGACGTCCCAGTGGCTGTCGATGACGATCGCCGGAGCGGGGTTGTTCACCTg                                                                 >  5:40517/1‑147 (MQ=255)                                                                                gCACAGCAGTGTCTGCAGCAGGTTGAGGCCGGTTGCCGGCTGTGCGCTGACACCGGCCATCGCCAGCAGCAGCCCGGTACTGGCGTTGGCGGCGATGACGTCCCAGTGGCTGTCGATGACGATCGCCGGAGCGGGGTTGTTCACCTGCa                                                               <  6:40517/149‑1 (MQ=255)                                                                                    agcagTGTCTGCAGCAGGTTGAGGCCGGTTGCCGGCTGTGCGCTGACACCGGCCATCGCCAGCAGCAGCCCGGTACTGGCGTTGGCGGCGATGACGTCCCAGTGGCTGTCGATGACGATCGCCGGAGCgggg                                                                            <  7:201943/132‑1 (MQ=255)                                                                                    agcagTGTCTGCAGCAGGTTGAGGCCGGTTGCCGGCTGTGCGCTGACACCGGCCATCGCCAGCAGCAGCCCGGTACTGGCGTTGGCGGCGATGACGTCCCAGTGGCTGTCGATGACGATCGCCGGAGCgggg                                                                            >  8:201943/1‑132 (MQ=255)                                                                                                 gcagGTTGAGGCCGGTTGCCGGCTGTGCGCTGACACCGGCCATCGCCAGCAGCAGCCCGGTACTGGCGTTGGCGGCGATGACGTCCCAGTGGCTGTCGATGACGATCGCCGGAGCGGGGTTGTTCACCTGCAGAATATGCTCGATGGCa                                              <  3:288727/149‑1 (MQ=255)                                                                                                       tGAGGCCGGTTGCCGGCTGTGCGCTGACACCGGCCATCGCCAGCAGCAGCCCGGTACTGGCGTTGGCGGCGATGACGTCCCAGTGGCTGTCGATGACGATCGCCGGAGCGGGGTTGTTCACCTGCAGAATATGCTCGATGGCAGTAtt                                         >  8:184242/1‑148 (MQ=255)                                                                                                          ggCCGGTTGCCGGCTGTGCGCTGACACCGGCCATCGCCAGCAGCAGCCCGGTACTGGCGTTGGCGGCGATGACGTCCCAGTGGCTGTCGATGACGATCGCCGGAGCGGGGTTGTTCACCTGCAGAATATGCTCGATGGCAGTATTCAcc                                     <  7:184242/149‑1 (MQ=255)                                                                                                           gCCGGTTGCCGGCTGTGCGCTGACACCGGCCATCGCCAGCAGCAGCCCGGTACTGGCGTTGGCGGCGATGACGTCCCAGTGGCTGTCGATGACGATCGCCg                                                                                    >  4:252037/1‑101 (MQ=255)                                                                                                           gCCGGTTGCCGGCTGTGCGCTGACACCGGCCATCGCCAGCAGCAGCCCGGTACTGGCGTTGGCGGCGATGACGTCCCAGTGGCTGTCGATGACGATCGCCg                                                                                    <  3:252037/101‑1 (MQ=255)                                                                                                                   ccGGCTGTGCGCTGACACCGGCCATCGCCAGCAGCAGCCCGGTACTGGCGTTGGCGGCGATGACGTCCCAGTGGCTGTCGATGACGATCGc                                                                                      >  3:122069/1‑91 (MQ=255)                                                                                                                   ccGGCTGTGCGCTGACACCGGCCATCGCCAGCAGCAGCCCGGTACTGGCGTTGGCGGCGATGACGTCCCAGTGGCTGTCGATGACGATCGc                                                                                      <  4:122069/91‑1 (MQ=255)                                                                                                                   ccGGCTGTGCGCTGACACCGGCCATCGCCAGCAGCAGCCCGGTACTGGCGTTGGCGGCGATGACGTCCCAGTGGCTGTCGATGACGATCGCCGGAGCGGGGTTGTTCACCTGCAGAATATGCTCGATGGCAGTATTCACCAAGGCCAg                             <  5:181527/148‑1 (MQ=255)                                                                                                                   ccGGCTGTGCGCTGACACCGGCCATCGCCAGCAGCAGCCCGGTACTGGCGTTGGCGGCGATGACGTCCCAGTGGCTGTCGATGACGATCGCCGGAGCGGGGTTGTTCACCTGCAGAATATGCTCGATGGCAGTATTCACCAAGGCCAGt                            <  8:36626/149‑1 (MQ=255)                                                                                                                           gcgcTGACACCGGCCATCGCCAGCAGCAGCCCGGTACTGGCGTTGGCGGCGATGACGTCCCAGTGGCTGTCGATGACGATCGCCGGAGCGGGGTTGTTCACCTGCAGAATATGCTCGATGGCAGTATTCACCAAGGCCAGTTCAGgcg                     >  8:192483/1‑148 (MQ=255)                                                                                                                                   acCGGCCATCGCCAGCAGCAGCCCGGTACTGGCGTTGGCGGCGATGACGTCCCAGTGGCTGTCGATGACGATCGCCGGAGCGGGGTTGTTCACCTGCAGAATATGCTCGATGGCAGTATTCACCAAGGCCAGTTCAGGCGCATCGAgcg            >  2:228003/1‑149 (MQ=255)                                                                                                                                      ggCCATCGCCAGCAGCAGCCCGGTACTGGCGTTGGCggcgatggccggtgtcagcgcacagccggcaaccggcctcaacctgctgcagacactgctgtgccccggtggtctgggtgatcacctggccaacgcgccggaaatccgcgc           >  7:117957‑M2/1‑36 (MQ=255)                                                                                                                                      ggCCATCGCCAGCAGCAGCCCGGTACTGGCGTTGGCggcgatggccggtgtcagcgcacagccggcaaccggcctcaacctgctgcagacactgctgtgccccggtggtctgggtgatcacctggccaacgcgccggaaatccgcgc           <  8:117957‑M2/147‑112 (MQ=255)                                                                                                                                        ccATCGCCAGCAGCAGCCCGGTACTGGCGTTGGCggcgatggccggtgtcagcgcacagccggcaaccggcctcaacctgctgcagacactgctgtgccccggtggtctgggtgatcacctggccaacgcgccggaaatccgcgctgct       <  6:68401‑M2/149‑116 (MQ=255)                                                                                                                                             gccgccaacgccagtaccgggctgctgctggcgatggccggtgtcagcgcacagccggcaaccggcctcaacctgctgcagacactgctgtgccccggtggtctgggtgatcacctggccaacgcgccggaaatccgcgctgctgcctg  <  6:181527‑M1/149‑147 (MQ=255)                                                                                                                                             gCCAGCAGCAGCCCGGTACTGGCGTTGGCGGCGATGACGTCCCAGTGGCTGTCGATGACGATCGCCGGAGCGGGGTTGTTCACCTGCAGAATATGCTCGATGGCAGTATTCACCAAGGCCAGTTc                          >  4:98670/1‑125 (MQ=255)                                                                                                                                             gCCAGCAGCAGCCCGGTACTGGCGTTGGCGGCGATGACGTCCCAGTGGCTGTCGATGACGATCGCCGGAGCGGGGTTGTTCACCTGCAGAATATGCTCGATGGCAGTATTCACCAAGGCCAGTTc                          <  3:98670/125‑1 (MQ=255)                                                                                                                                             gCCAGCAGCAGCCCGGTACTGGCGTTGGCGGCGATGACGTCCCAGTGGCTGTCGATGACGATCGCCGGAGCGGGGTTGTTCACCTGCAGAATATGCTCGATGGCAGTATTCACCAAGGCCAGTTCAGGCGCATCGAGCGGCGTggcggc  <  4:92968/149‑1 (MQ=255)                                                                                                                                               |                                                                                                                                                   CGGCCTCCCTGGAGGCACGTTGCCAGGCAGCAGCGCGGATTTCCGGCGCGTTGGCCAGGTGATCACCCAGACCACCGGGGCACAGCAGTGTCTGCAGCAGGTTGAGGCCGGTTGCCGGCTGTGCGCTGACACCGGCCATCGCCAGCAGCAGCCCGGTACTGGCGTTGGCGGCGATGACGTCCCAGTGGCTGTCGATGACGATCGCCGGAGCGGGGTTGTTCACCTGCAGAATATGCTCGATGGCAGTATTCACCAAGGCCAGTTCAGGCGCATCGAGCGGCGTGGCGGC  >  NC_002947/3041439‑3041727

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.