New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3041581	35 (0.710)	4 (0.090)	4/242	NT	11.3%	coding (411/819 nt)	PP_2653	Cro/CI family transcriptional regulator
	?	NC_002947	= 3041607	30 (0.640)					coding (385/819 nt)	PP_2653	Cro/CI family transcriptional regulator

CAGGCAGCAGCGCGGATTTCCGGCGCGTTGGCCAGGTGATCACCCAGACCACCGGGGCACAGCAGTGTCTGCAGCAGGTTGAGGCCGGTTGCCGGCTGTGCGCTGACACCGGCCATCGCCAGCAGCAGCCCGGTACTGGCGTTGGCGGCGATGACGTCCCAGTGGCTGTCGATGACGATCGCCGGAGCGGGGTTGTTCACCTGCAGAATATGCTCGATGGCAGTATTCACCAAGGCCAGTTCAGGCGCATCGAGCGGCGTGGCGGCGTAGCGGGGTGCGTATCCTG  >  NC_002947/3041462‑3041747                                                                                                                                                  |                                                                                                                                             cAGGCAGCAGCGCGGATTTCCGGCGCGTTGGCCAGGTGATCACCCAGACCACCGGGGCACAGCAGTGTCTGCAGCAGGTTGAGGCCGGTTGCCGGCTGTGCGCTGACACCGGCCATCGCCAGCAGCAGCCCGGTACTGGCGTTGGCggc                                                                                                                                           <  6:181527‑M2/149‑4 (MQ=255)       gcagcGCGGATTTCCGGCGCGTTGGCCAGGTGATCACCCAGACCACCGGGGCACAGCAGTGTCTGCAGCAGGTTGAGGCCGGTTGCCGGCTGTGCGCTGACACCGGCCATCGCCAGCAGCAGCCCGGTACTGGCGTTGGCGGCGATGAc                                                                                                                                     >  8:68972/1‑149 (MQ=255)         agcGCGGATTTCCGGCGCGTTGGCCAGGTGATCACCCAGACCACCGGGGCACAGCAGTGTCTGCAGCAGGTTGAGGCCGGTTGCCGGCTGTGCGCTGACACCGGCCATCGCCAGCAGCAGCCCGGTACTGGCGTTGGCGGCGATGACGt                                                                                                                                   <  1:8075/149‑1 (MQ=255)           cgcgGATTTCCGGCGCGTTGGCCAGGTGATCACCCAGACCACCGGGGCACAGCAGTGTCTGCAGCAGGTTGAGGCCGGTTGCCGGCTGTGCGCTGACACCGGCCATCGCCAGCAGCAGCCCGGTACTGGCGTTGGCGGCGATGACGTcc                                                                                                                                 <  7:68972/149‑1 (MQ=255)                 tttCCGGCGCGTTGGCCAGGTGATCACCCAGACCACCGGGGCACAGCAGTGTCTGCAGCAGGTTGAGGCCGGTTGCCGGCTGTGCGCTGACACCGGCCATCGCCAGCAGCAGCCCGGTACTGGCGTTGGCGGCGATGACGTc                                                                                                                                  <  1:116120/142‑1 (MQ=255)                 tttCCGGCGCGTTGGCCAGGTGATCACCCAGACCACCGGGGCACAGCAGTGTCTGCAGCAGGTTGAGGCCGGTTGCCGGCTGTGCGCTGACACCGGCCATCGCCAGCAGCAGCCCGGTACTGGCGTTGGCGGCGATGACGTc                                                                                                                                  >  2:116120/1‑142 (MQ=255)                 tttCCGGCGCGTTGGCCAGGTGATCACCCAGACCACCGGGGCACAGCAGTGTCTGCAGCAGGTTGAGGCCGGTTGCCGGCTGTGCGCTGACACCGGCCATCGCCAGCAGCAGCCCGGTACTGGCGTTGGCGGCGATGACGTCCCAGTgg                                                                                                                           >  3:92968/1‑149 (MQ=255)                  ttCCGGCGCGTTGTCCAGGTGATCCCCCAGACCACCGGGGCACAGCAGTGTCTGCAGCAGGTTGAGGCCGGTTTCCGGCTGTGCGCTGACACCGGCCAGCGCCAGCAGAAGCGCGGTACGGGCGTTGGCGGCGATGACGTCCCTGTGGc                                                                                                                          >  5:182316/1‑149 (MQ=255)                     cGGCGCGTTGGCCAGGTGATCACCCAGACCACCGGGGCACAGCAGTGTCTGCAGCAGGTTGAGGCCGGTTGCCGGCTGTGCGCTGACACCGGCCATCGCCAGCAGCAGCCCGGTACTGGCGTTGGCGGCGATGACGTCCCAGTGGCTGt                                                                                                                       >  7:36626/1‑149 (MQ=255)                            ttGGCCAGGTGATCACGCAGACCACCGGGGCACAGCAGTGTCTGCAGCAGGTTGAGGCCGGTTGCCGGCTGTGCGCTGACACCGGCCATCGCCAGCAGCAGCCCGGTACTGGCGTTGGCGGCGATGACGTCCCAGTGGCTGTCGATGAc                                                                                                                <  7:56816/149‑1 (MQ=255)                                  aGGTGATCACCCAGACCACCGGGGCACAGCAGTGTCTGCAGCAGGTTGAGGCCGGTTGCCGGCTGTGCGCTGACACCGGCCATCGCCAGCAGCAGCCCGGTACTGGCGTTGGCGGCGATGACGTCCCAGTGGCTGTCGATGACGATCGc                                                                                                          <  5:44044/149‑1 (MQ=255)                                        tCACCCAGACCACCGGGGCACAGCAGTGTCTGCAGCAGGTTGAGGCCGGTTGCCGGCTGTGCGCTGACACCGGCCATCGCCAGCAGCAGCCCGGTACTGGCGTTGGCGGCGATGACGTCCCAGTGGCTGTCGATGACGATCGCCGGAGc                                                                                                    >  5:214258/1‑149 (MQ=255)                                         cACCCAGACCACCGGGGCACAGCAGTGTCTGCAGCAGGTTGAGGCCGGTTGCCGGCTGTGCGCTGACACCGGCCATCGCCAGCAGCAGCCCGGTACTGGCGTTGGCGGCGATGACGTCCCAGTGGCTGTCGATGACGATCGCCGGAGCg                                                                                                   >  6:140004/1‑149 (MQ=255)                                            ccAGACCACCGGGGCACAGCAGTGTCTGCAGCAGGTTGAGGCCGGTTGCCGGCTGTGCGCTGACACCGGCCATCGCCAGCAGCAGCCCGGTACTGGCGTTGGCGGCGATGACGTCCCAGTGGCTGTCGATGACGATCGCCGGAGCgggg                                                                                                <  6:214258/149‑1 (MQ=255)                                              aGACCACCGGGGCACAGCAGTGTCTGCAGCAGGTTGAGGCCGGTTGCCGGCTGTGCGCTGACACCGGCCATCGCCAGCAGCAGCCCGGTACTGGCGTTGGCGGCGATGACGTCCCAGTGGCTGTCGATGACGATCGCCGGAGCGGGgtt                                                                                              >  4:288727/1‑149 (MQ=255)                                              aGACCACCGGGGCACAGCAGTGTCTGCAGCAGGTTGAGGCCGGTTGCCGGCTGTGCGCTGACACCGGCCATCGCCAGCAGCAGCCCGGTACTGGCGTTGGCGGCGATGACGTCCCAGTGGCTGTCGATGACGATCGCCGGAGCGGGgtt                                                                                              <  5:140004/149‑1 (MQ=255)                                                         gCACAGCAGTGTCTGCAGCAGGTTGAGGCCGGTTGCCGGCTGTGCGCTGACACCGGCCATCGCCAGCAGCAGCCCGGTACTGGCGTTGGCGGCGATGACGTCCCAGTGGCTGTCGATGACGATCGCCGGAGCGGGGTTGTTCACCTg                                                                                     >  5:40517/1‑147 (MQ=255)                                                         gCACAGCAGTGTCTGCAGCAGGTTGAGGCCGGTTGCCGGCTGTGCGCTGACACCGGCCATCGCCAGCAGCAGCCCGGTACTGGCGTTGGCGGCGATGACGTCCCAGTGGCTGTCGATGACGATCGCCGGAGCGGGGTTGTTCACCTGCa                                                                                   <  6:40517/149‑1 (MQ=255)                                                             agcagTGTCTGCAGCAGGTTGAGGCCGGTTGCCGGCTGTGCGCTGACACCGGCCATCGCCAGCAGCAGCCCGGTACTGGCGTTGGCGGCGATGACGTCCCAGTGGCTGTCGATGACGATCGCCGGAGCgggg                                                                                                >  8:201943/1‑132 (MQ=255)                                                             agcagTGTCTGCAGCAGGTTGAGGCCGGTTGCCGGCTGTGCGCTGACACCGGCCATCGCCAGCAGCAGCCCGGTACTGGCGTTGGCGGCGATGACGTCCCAGTGGCTGTCGATGACGATCGCCGGAGCgggg                                                                                                <  7:201943/132‑1 (MQ=255)                                                                          gcagGTTGAGGCCGGTTGCCGGCTGTGCGCTGACACCGGCCATCGCCAGCAGCAGCCCGGTACTGGCGTTGGCGGCGATGACGTCCCAGTGGCTGTCGATGACGATCGCCGGAGCGGGGTTGTTCACCTGCAGAATATGCTCGATGGCa                                                                  <  3:288727/149‑1 (MQ=255)                                                                                tGAGGCCGGTTGCCGGCTGTGCGCTGACACCGGCCATCGCCAGCAGCAGCCCGGTACTGGCGTTGGCGGCGATGACGTCCCAGTGGCTGTCGATGACGATCGCCGGAGCGGGGTTGTTCACCTGCAGAATATGCTCGATGGCAGTAtt                                                             >  8:184242/1‑148 (MQ=255)                                                                                   ggCCGGTTGCCGGCTGTGCGCTGACACCGGCCATCGCCAGCAGCAGCCCGGTACTGGCGTTGGCGGCGATGACGTCCCAGTGGCTGTCGATGACGATCGCCGGAGCGGGGTTGTTCACCTGCAGAATATGCTCGATGGCAGTATTCAcc                                                         <  7:184242/149‑1 (MQ=255)                                                                                    gCCGGTTGCCGGCTGTGCGCTGACACCGGCCATCGCCAGCAGCAGCCCGGTACTGGCGTTGGCGGCGATGACGTCCCAGTGGCTGTCGATGACGATCGCCg                                                                                                        <  3:252037/101‑1 (MQ=255)                                                                                    gCCGGTTGCCGGCTGTGCGCTGACACCGGCCATCGCCAGCAGCAGCCCGGTACTGGCGTTGGCGGCGATGACGTCCCAGTGGCTGTCGATGACGATCGCCg                                                                                                        >  4:252037/1‑101 (MQ=255)                                                                                            ccGGCTGTGCGCTGACACCGGCCATCGCCAGCAGCAGCCCGGTACTGGCGTTGGCGGCGATGACGTCCCAGTGGCTGTCGATGACGATCGc                                                                                                          <  4:122069/91‑1 (MQ=255)                                                                                            ccGGCTGTGCGCTGACACCGGCCATCGCCAGCAGCAGCCCGGTACTGGCGTTGGCGGCGATGACGTCCCAGTGGCTGTCGATGACGATCGc                                                                                                          >  3:122069/1‑91 (MQ=255)                                                                                            ccGGCTGTGCGCTGACACCGGCCATCGCCAGCAGCAGCCCGGTACTGGCGTTGGCGGCGATGACGTCCCAGTGGCTGTCGATGACGATCGCCGGAGCGGGGTTGTTCACCTGCAGAATATGCTCGATGGCAGTATTCACCAAGGCCAg                                                 <  5:181527/148‑1 (MQ=255)                                                                                            ccGGCTGTGCGCTGACACCGGCCATCGCCAGCAGCAGCCCGGTACTGGCGTTGGCGGCGATGACGTCCCAGTGGCTGTCGATGACGATCGCCGGAGCGGGGTTGTTCACCTGCAGAATATGCTCGATGGCAGTATTCACCAAGGCCAGt                                                <  8:36626/149‑1 (MQ=255)                                                                                                    gcgcTGACACCGGCCATCGCCAGCAGCAGCCCGGTACTGGCGTTGGCGGCGATGACGTCCCAGTGGCTGTCGATGACGATCGCCGGAGCGGGGTTGTTCACCTGCAGAATATGCTCGATGGCAGTATTCACCAAGGCCAGTTCAGgcg                                         >  8:192483/1‑148 (MQ=255)                                                                                                            acCGGCCATCGCCAGCAGCAGCCCGGTACTGGCGTTGGCGGCGATGACGTCCCAGTGGCTGTCGATGACGATCGCCGGAGCGGGGTTGTTCACCTGCAGAATATGCTCGATGGCAGTATTCACCAAGGCCAGTTCAGGCGCATCGAgcg                                >  2:228003/1‑149 (MQ=255)                                                                                                               ggCCATCGCCAGCAGCAGCCCGGTACTGGCGTTGGCggcgatggccggtgtcagcgcacagccggcaaccggcctcaacctgctgcagacactgctgtgccccggtggtctgggtgatcacctggccaacgcgccggaaatccgcgc                               >  7:117957‑M2/1‑36 (MQ=255)                                                                                                               ggCCATCGCCAGCAGCAGCCCGGTACTGGCGTTGGCggcgatggccggtgtcagcgcacagccggcaaccggcctcaacctgctgcagacactgctgtgccccggtggtctgggtgatcacctggccaacgcgccggaaatccgcgc                               <  8:117957‑M2/147‑112 (MQ=255)                                                                                                                 ccATCGCCAGCAGCAGCCCGGTACTGGCGTTGGCggcgatggccggtgtcagcgcacagccggcaaccggcctcaacctgctgcagacactgctgtgccccggtggtctgggtgatcacctggccaacgcgccggaaatccgcgctgct                           <  6:68401‑M2/149‑116 (MQ=255)                                                                                                                      gCCAGCAGCAGCCCGGTACTGGCGTTGGCGGCGATGACGTCCCAGTGGCTGTCGATGACGATCGCCGGAGCGGGGTTGTTCACCTGCAGAATATGCTCGATGGCAGTATTCACCAAGGCCAGTTc                                              <  3:98670/125‑1 (MQ=255)                                                                                                                      gCCAGCAGCAGCCCGGTACTGGCGTTGGCGGCGATGACGTCCCAGTGGCTGTCGATGACGATCGCCGGAGCGGGGTTGTTCACCTGCAGAATATGCTCGATGGCAGTATTCACCAAGGCCAGTTc                                              >  4:98670/1‑125 (MQ=255)                                                                                                                      gCCAGCAGCAGCCCGGTACTGGCGTTGGCGGCGATGACGTCCCAGTGGCTGTCGATGACGATCGCCGGAGCGGGGTTGTTCACCTGCAGAATATGCTCGATGGCAGTATTCACCAAGGCCAGTTCAGGCGCATCGAGCGGCGTggcggc                      <  4:92968/149‑1 (MQ=255)                                                                                                                                           gCGTTGGCggcgatggccggtgtcagcgcacagccggcaaccggcctcaacctgctgcagacactgctgtgccccggtggtctgggtgatcacctggccaacgcgccggaaatccgcgctgctgcctggcaacgtgcctccagggag   >  5:68401‑M2/1‑8 (MQ=255)                                                                                                                                           gCGTTGGCGGCGATGACGTCCCAGTGGCTGTCGATGACGATCGCCGGAGCGGGGTTGTTCACCTGCAGAATATGCTCGATGGCAGTATTCACCAAGGCCAGTTCAGGCGCATCGAGCGGCGTGGCGGCGTAGCGGGGTGCGTATCCTg  >  2:234623/1‑148 (MQ=255)                                                                                                                                                  |                                                                                                                                             CAGGCAGCAGCGCGGATTTCCGGCGCGTTGGCCAGGTGATCACCCAGACCACCGGGGCACAGCAGTGTCTGCAGCAGGTTGAGGCCGGTTGCCGGCTGTGCGCTGACACCGGCCATCGCCAGCAGCAGCCCGGTACTGGCGTTGGCGGCGATGACGTCCCAGTGGCTGTCGATGACGATCGCCGGAGCGGGGTTGTTCACCTGCAGAATATGCTCGATGGCAGTATTCACCAAGGCCAGTTCAGGCGCATCGAGCGGCGTGGCGGCGTAGCGGGGTGCGTATCCTG  >  NC_002947/3041462‑3041747

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.