New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 3143125 =52 (1.050)4 (0.090) 3/240 NT 7.7% coding (49/1539 nt) rbsA‑II ribose ABC transporter ‑ ATP‑binding subunit
?NC_002947 3143163 = 47 (1.020)coding (87/1539 nt) rbsA‑II ribose ABC transporter ‑ ATP‑binding subunit

ACCTGGCCGGCGAGCACGATCTGCCGCCCGAAACCTTCGTCGAGACCCTGCTGACCACGGCGGGCAACGTCGATGACGTCAAACGCATCCGAGGCGACGCATGAGTACGCCGGTGCTGGAGCTGCGTGGCATTGTCAAGACCTTCGGTGCCACCCGGGCGCTCGACGGCGCCAGCCTGCGGGTGGCGGCGGGCAGCGTGCACGGTCTGGTGGGCGAGAACGGCGCCGGCAAGTCTACGCTGATCAAGGTGCTGGCCGGCATCCACCGCCCGGACGCCGGCAGCCTGCTGC  >  NC_002947/3142977‑3143266
                                                                                                                                                    |                                                                                                                                             
ctccacctggcgcgggctgaattgcccgtgcggctggccgtcgagcagcaggctgccggcgtccgggcggtggatgccggccagcaccttgatcagcgtagacttgccggcgccgttctcgcccaccagaccgtgcacgctgcgcgccg                                                                                                                                               >  4:290282‑M1/149‑149 (MQ=255)
              cACGATCTGCCGCCCGAAACCTTCGTCGAGACCCTGCTGACCACGGCGGGCAACGTCGATGACGTCAAACTCATCCGAGGCGACGCATGAGTACGCCGGTGCTGGAGCTGCGTGGCATTGTCAAGACCTTCGGTGCCACCCGGGCGCt                                                                                                                                  <  1:279664/148‑1 (MQ=255)
              cACGATCTGCCGCCCGAAACCTTCGTCGAGACCCTGCTGACCACGGCGGGCAACGTCGATGACGTCAAACGCATCCGAGGCGACGCATGAGTACGCCGGTGCTGGAGCTGCGTGGCATTGTCAAGACCTTCGGTGCCACCCGGGCGCTc                                                                                                                                 >  8:8300/1‑149 (MQ=255)
              cACGATCTGCCGCCCGAAACCTTCGTCGAGACCCTGCTGACCACGGCGGGCAACGTCGATGACGTCAAACGCATCCGAGGCGACGCATGAGTACGCCGGTGCTGGAGCTGCGTGGCATTGTCAAGACCTTCGGTGCCACCCGGGCGCTc                                                                                                                                 <  1:119739/149‑1 (MQ=255)
                 gATCTGCCGCCCGAAACCTTCGTCGAGACCCTGCTGACCACGGCGGGCAACGTCGATGACGTCAAACGCATCCGAGGCGACGCATGAGTACGCCGGTGCTGGAGCTGCGTGGCATTGTCAAGACCTTCGGTGCCACCCGGGCGCTCGAc                                                                                                                              >  3:211812/1‑149 (MQ=255)
                          cccGAAACCTTCGTCGAGACCCTGCTGACCACGGCGGGCAACGTCGATGACGTCAAACGCATCCGAGGCGACGCATGAGTACGCCGGTGCTGGAGCTGCGTGGCATTGTCAAGACCTTCGGTGCCACCCGGGCGCTCGACGGCGCCAGc                                                                                                                     >  1:268623/1‑149 (MQ=255)
                          cccGAAACCTTCGTCGAGACCCTGCTGACCACGGCGGGCAACGTCGATGACGTCAAACGCATCCGAGGCGACGCATGAGTACGCCGGTGCTGGAGCTGCGTGGCATTGTCAAGACCTTCGGTGCCACCCGGGCGCTCGACGGCGCCAGc                                                                                                                     >  4:135454/1‑149 (MQ=255)
                           ccGAAACCTTCGTCGAGACCCTGCTGACCACGGCGGGCAACGTCGATGACGTCAAACGCATCCGAGGCGACGCATGAGTACGCCGGTGCTGGAGCTGCGTGGCATTGTCAAGACCTTCGGTGCCACCCGGGCGCTCGACGGCGCCAGcc                                                                                                                    <  1:181599/149‑1 (MQ=255)
                           ccGAAACCTTCGTCGAGACCCTGCTGACCACGGCGGGCAACGTCGATGACGTCAAACGCATCCGAGGCGACGCATGAGTACGCCGGTGCTGGAGCTGCGTGGCATTGTCAAGACCTTCGGTGCCACCCGGGCGCTCGACGGCGCCAGcc                                                                                                                    >  5:1722/1‑149 (MQ=255)
                                   ttCGTCGAGACCCTGCTGCCCACGGCGGGCAACGTCGATGACGTCAAACGCATCCGCGGCGACGCATGAGTACGCCGGTGCTGGAGCTGCGTCGCATAGTCAAGACCTTCGGTGCCACCCGGGCGCTCGACGGCGCCAGACTGCGGGTg                                                                                                            >  5:267619/1‑149 (MQ=255)
                                      cgtcgagcagcaggctgccggcgtccgggcggtggatgccggccagcaccttgatcagcgtagacttgccggcgccgttctcgcccaccagaccgtgcacgctgcccgccGCCACCCGGGCGCTCGACGGCGCCAGCCTGCGGGTggcg                                                                                                         >  8:264829‑M1/111‑149 (MQ=255)
                                      cgtcgagcagcaggctgccggcgtccgggcggtggatgccggccagcaccttgatcagcgtagacttgccggcgccgttctcgcccaccagaccgtgcacgctgcccgccGCCACCCGGGCGCTCGACGGCGCCAGCCTGCGGGTggcg                                                                                                         >  7:218127‑M1/111‑149 (MQ=255)
                                      cgtcgagcagcaggctgccggcgtccgggcggtggatgccggccagcaccttgatcagcgtagacttgccggcgccgttctcgcccaccagaccgtgcacgctgcccgccGCCACCCGGGCGCTCGACGGCGCCAGCCTGCGGGTggcg                                                                                                         <  2:268948‑M1/39‑1 (MQ=255)
                                          gagcagcaggctgccggcgtccgggcggtggatgccggccagcaccttgatcagcgtagacttgccggcgccgttctcgcccaccagaccgtgcacgctgcccgccGCCACCCGGGCGCTCGACGGCGCCAGCCTGCGGGTGGcggcgg                                                                                                     >  1:268948‑M1/107‑149 (MQ=255)
                                              ccTGCTGACCACGGCGGGCAACGTCGATGACGTCAAACGCATCCGAGGCGACGCATGAGTACGCCGGTGCTGGAGCTGCGTGGCATTGTCAAGACGTTCGGTGCCACCCGGGCGCTCGACGGCGCCAGCCTGCGGGTGGCGGCGGGCAg                                                                                                 >  1:258982/1‑149 (MQ=255)
                                              ccTGCTGACCACGGCGGGCAACGTCGATGACGTCAAACGCATCCGAGGCGACGCATGAGTACGCCGGTGCTGGAGCTGCGTGGCATTGTCAAGACCTTCGGTGCCACCCGGGCGCTCGACGGCGCCAGCCTGCGGGTGGCGGCGGGCAg                                                                                                 >  5:217956/1‑149 (MQ=255)
                                               ctgctgACCACGGCGGGCAACGTCGATGACGTCAAACGCATCCGAGGCGACGCATGAGTACGCCGGTGCTGGAGCTGCGTGGCATTGTCAAGACCTTCGGTGCCACCCGGGCGCTCGACGGCGCCAGCCTGCGGGTGGCGGCGGGCAGc                                                                                                <  4:211812/149‑1 (MQ=255)
                                                  ctgACCACGGCGGGCAACGTCGATGACGTCAAACGCATCCGAGGCGACGCATGAGTACGCCGGTGCTGGAGCTGCGTGGCATTGTCAAGACCTTCGGTGCCACCCGGGCGCTCGACGGCGCCAGCCTGCGGGTGGCGGCGGGCAGCGt                                                                                              <  2:122697/148‑1 (MQ=255)
                                                     cccACGGCGGGCAACGGCGATGACGTCAAACGCATCCGAGGCGACGCAGGAGTACGCCGGTGCTGGAGCTGCGTGGCATTGTCAAGACCTTCGGTGCCACCCGGGCGCTCGACGGCGCCAACCTGCGGGTGGCGGCGGGCAGCGTGCAc                                                                                          <  7:114442/148‑1 (MQ=255)
                                                     aCCACGGCGGGCAACGTCGATGACGTCAAACGCATCCGAGGCGACGCATGAGTACGCCGGTGCTGGAGCTGCGTGGCATTGTCAAGACCTTCGGTGCCACCCGGGCGCTCGACGGCGCCAGCCTGCGGGTGGCGGCGGGCAGCGTGCa                                                                                           <  4:178059/148‑1 (MQ=255)
                                                      ccACGGCGGGCAACGTCGATGACGTCAAACGCATCCGAGGCGACGCATGAGTACGCCGGTGCTGGAGCTGCGTGGCATTGTCAAGACCTTCGGTGCCACCCGGGCGCTCGACGGCGCCAGCCTGCGGGTGGCGGCGGGCAGCGTGCAc                                                                                          <  2:258982/148‑1 (MQ=255)
                                                             gggCAACGTCGATGACGTCAAACGCATCCGAGGCGACGCATGAGTACGCCGGTGCTGGAGCTGCGTGGCATTGTCAAGACCTTCGGTGCCACCCGGGCGCTCGACGGCGCCAGCCTGCGGGt                                                                                                             >  8:235216/1‑122 (MQ=255)
                                                             gggCAACGTCGATGACGTCAAACGCATCCGAGGCGACGCATGAGTACGCCGGTGCTGGAGCTGCGTGGCATTGTCAAGACCTTCGGTGCCACCCGGGCGCTCGACGGCGCCAGCCTGCGGGt                                                                                                             <  7:235216/122‑1 (MQ=255)
                                                                 aaCGTCGATGACGTCAAACGCATCCGAGGCGACGCATGAGTACGCCGGTGCTGGAGCTGCGTGGCATTGTCAAGACCTTCGGTGCCACCCGGGCGCTCGACGGCGCCAGCCTGCGGGTGGCGGCGGGCAGCGTGCACGGTCTGGTGGGc                                                                              <  2:268623/149‑1 (MQ=255)
                                                                       gATGACGTCAACCGCATCCGAGGCGACGCATGAGGACGCCGGTGCTGGAGCTGCGTGGCATTGTCAAGACCTTCGGTGCCACCCGGGCGCTCGACGGCGCCAGCCTGCGGGTGGCGGCGGGCAGCGTGCACGGTCTGGTGGGCGAGaa                                                                         <  7:227191/148‑1 (MQ=255)
                                                                        atcaCGTCAAACGCATCCGAGGCGACGCATGAGTACGCCCGTGCTGGAGCTGCGTGGCATTGTCAAGACCTTCGGTGCCACCCGGGCGCTCGACGGCGCCAGCCTCCGGGTGGCGGCGGGCAGCGTGCACGGTCTGGTGGGCGAGAACg                                                                       >  1:207664/4‑149 (MQ=255)
                                                                         tGACGTCAAACGCATCCGAGGCGACGCATGAGTACGCCGGTGCTGGAGCTGCGTGGCATTGTCAAGACCTTCGGTGCCACCCGGGCGCTCGACGGCGCCAGCCTGCGGGTGGCGGCGGGCAGCGTGCACGGTCTGGTGGGCGAGAACgg                                                                      <  6:1722/149‑1 (MQ=255)
                                                                         tGACGTCAAACGCATCCGAGGCGACGCATGAGTACGCCGGTGCTGGAGCTGCGTGGCATTGTCAAGACCTTCGGTGCCACCCGGGCGCTCGACGGCGCCAGCCTGCGGGTGGCGGCGGGCAGCGTGCACGGTCTGGTGGGCGAGAACgg                                                                      >  2:51098/1‑149 (MQ=255)
                                                                            cGTCAAACGCATCCGAGGCGACGCATGAGTACGCCGGTGCTGGAGCTGCGTGGCATTGTCAAGACCTTCGGTGCCACCCGGGCGCTCGACGGCGCCAGCCTGCGGGTGGCGGCGGGCAGCGTGCACGGTCTGGTGGGCGAGAACGgcgc                                                                   >  5:296453/1‑149 (MQ=255)
                                                                             gTCAAACGCATCCGAGGCGACGCATGAGTACGCCGGTGCTGGAGCTGCGTGGCATTGTCAAGACCTTCGGTGCCACCCGGGCGCTCGACGGCGCCAGCCTGCGGGTGGCGGCGGGCAGCGTGCACGGTCtggtgg                                                                                >  8:278226/1‑135 (MQ=255)
                                                                             gTCAAACGCATCCGAGGCGACGCATGAGTACGCCGGTGCTGGAGCTGCGTGGCATTGTCAAGACCTTCGGTGCCACCCGGGCGCTCGACGGCGCCAGCCTGCGGGTGGCGGCGGGCAGCGTGCACGGTCtggtgg                                                                                <  7:278226/135‑1 (MQ=255)
                                                                             gTCAAACGCATCCGAGGCGACGCATGAGTACGCCGGTGCTGGAGCTGCGTGGCATTGTCAAGACCTTCGGTGCCACCCGGGCGCTCGACGGCGCCAGCCTGCGGGTGGCGGCGGGCAGCGTGCACGGTCTGGTGGGCGAGAACGGCGcc                                                                  >  3:92018/1‑149 (MQ=255)
                                                                               cAAACGCATCCGAGGCGACGCATGAGTACGCCGGTGCTGGAGCTGCGTGGCATTGTCAAGACCTTCGGTGCCACCCGGGCGCTCGACGGCGCCAGCCTGCGGGTGGCGGCGGGCAGCGTGCACGGTCTGGTGGGCGAGAACGgcgc                                                                   <  6:234228/146‑1 (MQ=255)
                                                                               cAAACGCATCCGAGGCGACGCATGAGTACGCCGGTGCTGGAGCTGCGTGGCATTGTCAAGACCTTCGGTGCCACCCGGGCGCTCGACGGCGCCAGCCTGCGGGTGGCGGCGGGCAGCGTGCACGGTCTGGTGGGCGAGAACGgcgc                                                                   >  5:234228/1‑146 (MQ=255)
                                                                                aaaCGCATCCGAGGCGACGCATGAGTACGCCGGTGCTGGAGCTGCGTGGCATTGTCAAGACCTTCGGTGCCACCCGGGCGCTCGACGGCGCCAGCCTGCGGGTGGCGGCGGGCAGCGTGCACGGTCTGGTGGGCgag                                                                           >  2:294244/1‑137 (MQ=255)
                                                                                aaaCGCATCCGAGGCGACGCATGAGTACGCCGGTGCTGGAGCTGCGTGGCATTGTCAAGACCTTCGGTGCCACCCGGGCGCTCGACGGCGCCAGCCTGCGGGTGGCGGCGGGCAGCGTGCACGGTCTGGTGGGCgag                                                                           <  1:294244/137‑1 (MQ=255)
                                                                                aaaCGCATCCGAGGCGACGCATGAGTACGCCGGTGCTGGAGCTGCGTGGCATTGTCAAGACCTTCGGTGCCACCCGGGCGCTCGACGGCGCCAGCCTGCGGGTGGCGGCGGGCAGCGTGCACGGTCTGGTGGGCGAGAACGGCGCCgg                                                                >  7:2895/1‑148 (MQ=255)
                                                                                aaaCGCATCCGAGGCGACGCATGAGTACGCCGGTGCTGGAGCTGCGTGGCATTGTCAAGACCTTCGGTGCCACCCGGGCGCTCGACGGCGCCAGCCTGCGGGTGGCGGCGGGCAGCGTGCACGGTCTGGTGGGCGAGAACGGCGCCGGc                                                               <  7:8300/149‑1 (MQ=255)
                                                                                      aTCCGAGGCGACGCATGAGTACGCCGGTGCTGGAGCTGCGTGGCATTGTCAAGACCTTCGGTGCCACCCGGGCGCTCGACGGCGCCAGCCTGCGGGTGGCGGCGGGCAGCGTGCACGGTCTGGTGGGCGAGAACGGCGCCGGCAAGTc                                                          >  5:132061/1‑148 (MQ=255)
                                                                                          gAGGCGACGCATGAGTACGCCGGTGCTGGAGCTGCGTGGCATTGTCAAGACCTTCGGTGCCACCCGGGCGCTCGACGGCGCCAGCCTGCGGGTGGCGGCGGGCAGCGTGCACGGTCTGGTGGGCGAGAACGGCGCCGGCAAGTCTACGc                                                     >  7:68394/1‑149 (MQ=255)
                                                                                           aGGCGACGCATGAGTACGCCGGTGCTGGAGCTGCGTGGCATTGTCAAGACCTTCGGTGCCACCCGGGCGCTCGACGGCGCCAGCCTGGGGGTGGCGGCGGGCAGCGTGCACGGTCTGGTGGGCGAGAACGGCGCCGGCAAGTCTACGCt                                                    <  4:92018/149‑1 (MQ=255)
                                                                                               gACGCATGAGTACGCCGGTGCTGGAGCTGCGTGGCATTGTCAAGACCTTCGGTGCCACCCGGGCGCTCGACGGCGCCAGCCTGCGGGTGGCGGCGGGCAGCGTGCACGGTCTGGTGGGCGAGAACGGCGCCGGCAAGTCTACGCTGATc                                                <  6:217956/149‑1 (MQ=255)
                                                                                                  gCATGAGTACGCCGGTGCTGGAGCTGCGTGGCATTGTCAAGACCTTCGGTGCCACCCGGGCGCTCGACGGCGCCAGCCTGCGGGTGGCGGCGGGCAGCGTGCACGGTCTGGTGGGCGAGAACGGCGCCGGCAAGTCTACGCTGATCAAg                                             >  2:316171/1‑149 (MQ=255)
                                                                                                  gCATGAGTACGCCGGTGCTGGAGCTGCGTGGCATTGTCAAGACCTTCGGTGCCACCCGGGCGCTCGACGGCGCCAGCCTGCGGGTGGCGGCGGGCAGCGTGCACGGTCTGGTGGGCGAGAACGGCGCCGGCAAGTCTACGCTGATCAAg                                             <  6:132061/149‑1 (MQ=255)
                                                                                                  gCATGAGTACGCCGGTGCTGGAGCTGCGTGGCATTGTCAAGACCTTCGGTGCCACCCGGGCGCTCGACGGCGCCAGCCTGCGGGTGGCGGCGGGCAGCGTGCACGGTCTGGTGGGCGAGAACGGCGCCGGCAAGTCTACGCTGATCAAg                                             <  1:182569/149‑1 (MQ=255)
                                                                                                    aTGAGTACGCCGGTGCTGGAGCTGCGTGGCATTGTCAAGACCTTCGGTGCCACCCGGGCGCTCGACGGCGCCAGCCTGCGGGTGGCGGCGGGCAGCGTGCACGGTCTGGTGGGCGAGAACGGCGCCGGCAAGTCTACGCTGCTCAAGGt                                           >  3:230717/1‑149 (MQ=255)
                                                                                                     tGAGTACGCCGGTGCTGGAGCTGCGTGGCATTGTCAAGACCTTCGGTGCCACCCGGGCGCTCGACGGCGCCAGCCTGCGGGTGGCGGCGGGCAGCGTGCACGGTCTGGTGGGCGAGAACGGCGCCGGCAAGTCTACGCTGATCAAGGTg                                          <  8:65563/149‑1 (MQ=255)
                                                                                                      gAGTACGCCGGTGCTGGAGCTGCGTGGCATTGTCAAGACCTTCGGTGCCACCCGGGCGCTCGACGGCGCCAGCCTGCGGGTGGCGGCGGGCAGCGTGCACGGTCTGGTGGGCGAGAACGGCGCCGGCAAGTCTACGCTGATCAAGGTg                                          <  6:267619/148‑1 (MQ=255)
                                                                                                                            cGTGGCATTGTCAAGACCTTCGGTGCCACCCGGGCGCTCGACGGCGCCAGCCTGCGGGTGGCGGCGGGCAGCGTGCACGGTCTGGTGGGCGAGAACGGCGCCGGCAAGTCTACGCTGATCAAGGTGCTGGCCGGCATCCACCGCCCGGa                   >  2:144967/1‑149 (MQ=255)
                                                                                                                             gTGGCATTGTCAAGACCTTCGGTGCCACCCGGGCGCTCGACGGCGCCAGCCTGCGGGTGGCGGCGGGCAGCGTGCACGGTCTGGTGGGCGAGAACGGCGCCGGCAAGTCTACGCTGATCAAGGTGCTGGCCGGCATCCACCGCCCGGAc                  <  3:135454/149‑1 (MQ=255)
                                                                                                                              tGGCATTGTCAAGACCTTCGGTGCCACCCGGGCGCTCGACGGCGCCAGCCTGCGGGTGGCGGCGGGCAGCGTGCACGGTCTGGTGGGCGAGAACGGCGCCGGCAAGTCTACGCTGATCAAGGTGCTGGCCGGCATCCACCGCCCGGACg                 >  3:308733/1‑149 (MQ=255)
                                                                                                                                 cATTGTCAAGACCTTCGGTGCCACCCGGGCGCTCGACGGCGCCAGCCTGCGGGTGGCGGCGGGCAGCGTGCACGGTCTGGTGGGCGAGAACGGCGCCGGCAAGTCTACGCTGATCAAGGTGCTGGCCGGCATCCACCGCCCGGACGCCg              <  8:68394/149‑1 (MQ=255)
                                                                                                                                  aTTGTCAAGACCTTCGGTGCCACCCGGGCGCTCGACGGCGCCAGCCTGCGGGTGGCGGCGGGCAGCGTGCACGGTCTGGTGGGCGAGAACGGCGCCGGCAAGTCTACGCTGATCAAGGTGCTGGCCGGCATCCACCGCCCGGACGCCgg             >  8:214507/1‑149 (MQ=255)
                                                                                                                                          gACCTTCGGTGCCACCCGGGCGCTCGACGGCGCCAGCCTGCGGGTGGCGGCGGGCAGCGTGCACGGTCTGGTGGGCGAGAACGGCGCCGGCAAGTCTACGCTGATCAAGGTGCTGGCCGGCATCCACCGCCCGGACGCCGGCAGCctgc     <  1:51098/149‑1 (MQ=255)
                                                                                                                                           aCCTTCGGTGCCACCCGGGCGCTCGACGGCGCCAGCCTGCGGGTGGCGGCGGGCAGCGTGCACGGTCTGGTGGGCGAGAACGGCGCCGGCAAGTCTACGCTGATCAAGGTGCTGGCCGGCATCCACCGCCCGGACGCCGGCAGCctgct    >  1:302/1‑149 (MQ=255)
                                                                                                                                           aCCTTCGGTGCCACCCGGGCGCTCGACGGCGCCAGCCTGCGGGTGGCGGCGGGCAGCGTGCACGGTCTGGTGGGCGAGAACGGCGCCGGCAAGTCTACGCTGATCAAGGTGCTGGCCGGCATCCACCGCCCGGACGCCGGCAGCctgct    <  5:156918/149‑1 (MQ=255)
                                                                                                                                             cTTCGGTGCCACCCGGGCGCTCGACGGCGCCAGCCTGCGGGTGGCGGCGGGCAGCGTGCACGGTCTGGTGGGCGAGAACGGCGCCGGCAAGTCTACGCTGATCAAGGTGCTGGCCGGCATCCACCGCCCGGACGCCGGCAGCCtgctgc  >  3:265547/1‑149 (MQ=255)
                                                                                                                                                    |                                                                                                                                             
ACCTGGCCGGCGAGCACGATCTGCCGCCCGAAACCTTCGTCGAGACCCTGCTGACCACGGCGGGCAACGTCGATGACGTCAAACGCATCCGAGGCGACGCATGAGTACGCCGGTGCTGGAGCTGCGTGGCATTGTCAAGACCTTCGGTGCCACCCGGGCGCTCGACGGCGCCAGCCTGCGGGTGGCGGCGGGCAGCGTGCACGGTCTGGTGGGCGAGAACGGCGCCGGCAAGTCTACGCTGATCAAGGTGCTGGCCGGCATCCACCGCCCGGACGCCGGCAGCCTGCTGC  >  NC_002947/3142977‑3143266

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.