| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 3168951 | 38 (0.770) | 3 (0.060) | 3/242 | NT | 7.9% | coding (846/2880 nt) | PP_2782 | class III pyridoxalphosphate dependent aminotransferase |
| ? | NC_002947 | = 3168978 | 34 (0.730) | coding (873/2880 nt) | PP_2782 | class III pyridoxalphosphate dependent aminotransferase | |||||
GGCTGAACGTCGAGTTCATCGACCCACAGCAGCCCCATCAGTTGCAGGAATTGCCGGCCCGGCACACGCACCATTGGTTGAGCCTGCAATGGGACGGCGAACACCTGCACGTGCTGCAATTGC‑CGTTCAGTGCAATTACCGCCGTGTTGATGGAACCGATTCAGGGCGAAGGCGGTATCAACGAGTTCGCGGCCGAGTTCTATCTGGGGCTGCGCAAGCTGTGTAACGAGCAACAATGCCCGCTGGTGGTCGATGAAGTGCAGTCGGGTTTTGGTCGCGCCGGGACGTTTC > NC_002947/3168809‑3169099 | ggCTGAACGTCGAGTTCATCGACCCACAGCAGCCCCATCAGTTGCAGGAATTGCCGGCCCGGCACACGCACCATTGGTTGAGCCTGCAATGGGACGGCGAACACCTGCACGTGCTGCAATTGC‑CGTTCAGTGCAATTACCGCCGTGtt > 1:22184/1‑148 (MQ=255) gCTGAACGTCGAGTTCATCGACCCACAGCAGCCCCATCAGTTGCAGGAATTGCCGGCCCGGCACACGCACCATTGGTTGAGCCTGCAATGGGACGGCGAACACCTGCACGTGCTGCAATTGC‑CGTTCAGTGCAATTACCGCCGTGTTGa > 8:266829/1‑149 (MQ=255) gCTGAACGTCGAGTTCATCGACCCACAGCAGCCCCATCAGTTGCAGGAATTGCCGGCCCGGCACACGCACCATTGGTTGAGCCTGCAATGGGACGGCGAACACCTGCACGTGCTGCAATTGC‑CGTTCAGTGCAATTACCGCCGTGTTGa < 6:75301/149‑1 (MQ=255) cGTCGAGTTCATCGACCCACAGCAGCCCCATCAGTTGCAGGAATTGCCGGCCCGGCACACGCACCATTGGTTGAGCCTGCAATGGGACGGCGAACACCTGCACGTGCTGCAATTGC‑CGTTCAGTGCAATTACCGCCGTGTTGATGGAAc < 7:266829/149‑1 (MQ=255) gTCGAGTTCATCGACCCACAGCAGCCCCATCAGTTGCAGGAATTGCCGGCCCGGCACACGCACCATTGGTTGAGCCTGCAATGGGACGGCGAACACCTGCACGTGCTGCAATTGC‑CGTTCAGTGCAATTACCGCCGTGTTGATGGAAcc > 6:284522/1‑149 (MQ=255) gAGTTCATCGACCCACAGCAGCCCCATCAGTTGCAGGAATTGCCGGCCCGGCACACGCACCATTGGTTGAGCCTGCAATGGGACGGCGAACACCTGCACGTGCTGCAATTGC‑CGTTCAGTGCAATTACCGCCGTGTTGATGGAACCGa < 2:307934/148‑1 (MQ=255) gAGTTCATCGACCCACAGCAGCCCCATCAGTTGCAGGAATTGCCGGCCCGGCACACGCACCATTGGTTGAGCCTGCAATGGGACGGCGAACACCTGCACGTGCTGCAATTGC‑CGTTCAGTGCAATTACCGCCGTGTTGATGGAACCGAt < 1:271782/149‑1 (MQ=255) aTCGACCCACAGCAGCCCCATCAGTTGCCGGAATTGCCGGCCCGGCACACGCACCATTGGTTGAGCCTGCAATGGGACGGCGAACACCTGCACGTGCTGCAATTGC‑CGTTCAGTGCAATTACCGCCGTGTTGATGGAACCGATTCAgg < 5:284522/148‑1 (MQ=255) aTCGACCCACAGCAGCCCCATCAGTTGCAGGAATTGCCGGCCCGGCACACGCACCATTGGTTGAGCCTGCAATGGGACGGCGAACACCTGCACGTGCTGCAATTGC‑CGTTCAGTGCAATTACCGCCGTGTTGATGGAACCGATTCAggg < 3:100280/149‑1 (MQ=255) tCGACCCACAGCAGCCCCATCAGTTGCAGGAATTGCCGGCCCGGCACACGCACCATTGGTTGAGCCTGCAATGGGACGGCGAACACCTGCACGTGCTGCAATTGC‑CGTTCAGTGCAATTACCGCCGTGTTGATGGAACCGATTCAGGGc > 5:18945/1‑149 (MQ=255) cccACAGTAGCCCCATCAGTTGCAGGAATTGCCGGCCCGGCACACGCACCATTGGTTGAGCCTGCAATGGGACGGCGAACACCTGCACGTGCTGCAATTGC‑CGTTCAGTGCAATTACCGCCGTGTTGATGGAACCGATTCAGGGCGAAg < 2:32273‑M2/149‑2 (MQ=255) cccACAGCAGCCCCATCAGTTGCAGGAATTGCCGGCCCGGCACACGCACCATTGGTTGAGCCTGCAATGGGACGGCGAACACCTGCACGTGCTGCAATTGC‑CGTTCAGTGCAATTACCGCCGTGTTGAt < 5:288/129‑1 (MQ=255) cccACAGCAGCCCCATCAGTTGCAGGAATTGCCGGCCCGGCACACGCACCATTGGTTGAGCCTGCAATGGGACGGCGAACACCTGCACGTGCTGCAATTGC‑CGTTCAGTGCAATTACCGCCGTGTTGAt > 6:288/1‑129 (MQ=255) acaGCAGCCCCATCAGTTGCAGGAATTGCCGGCCCGGCACACGCACCATTGGTTGAGCCTGCAATGGGACGGCGAACACCTGCACGTGCTGCAATTGC‑CGTTCAGTGCAATTACCGCCGTGTTGATGGAACCGATTCAGGGCGAAggcg < 2:15974‑M2/149‑5 (MQ=255) agcCCCATCAGTTGCAGGAATTGCCGGCCCGGCACACGCACCATTGGTTGAGCCTGCAATGGGACGGCGAACACCTGCACGTGCTGCAATTGC‑CGTTCAGTGCAATTACCGCCGTGTTGATGGAACCGATTCAGGGCGAAGGCGGTATc < 6:18945/149‑1 (MQ=255) ccccATCAGTTGCAGGAATTGCCGGCCCGGCACACGCACCATTGGTTGAGCCTGCAATGGGACGGCGAACACCTGCACGTGCTGCAATTGC‑CGTTCAGTGCAATTACCGCCttcgtcctgaatcggttccatcaacacggcggtaattg < 5:149809‑M1/149‑39 (MQ=255) ccccATCAGTTGCAGGAATTGCCGGCCCGGCACACGCACCATTGGTTGAGCCTGCAATGGGACGGCGAACACCTGCACGTGCTGCAATTGC‑CGTTCAGTGCAATTACCGCCGTGTTGATGGAACCGATTCAGGGCGAAGGCGGTATCaa > 4:203577/1‑149 (MQ=255) cccATCAGTTGCAGGAATTGCCGGCCCGGCACACGCACCATTGGTTGAGCCTGCAATGGGACGGCGAACACCTGCACGTGCTGCAATTGC‑CGTTCAGTGCAATTACCGCCGTGTTGATGGAACCGATTCAGGGCGAAggcggt > 8:178957‑M2/1‑137 (MQ=255) cccATCAGTTGCAGGAATTGCCGGCCCGGCACACGCACCATTGGTTGAGCCTGCAATGGGACGGCGAACACCTGCACGTGCTGCAATTGC‑CGTTCAGTGCAATTACCGCCGTGTTGATGGAACCGATTCAGGGCGAAggcggt < 7:178957‑M2/143‑7 (MQ=255) ggAATTGCCGGCCCGGCACACGCACCATTGGTTGAGCCTGCAATGGGACGGCGAACACCTGCACGTGCTGCAATTGC‑CGTTCAGTGCAATTACCGCCttcgccctgaatcggttccatcaacacggcggt < 1:203195‑M1/130‑34 (MQ=255) ggAATTGCCGGCCCGGCACACGCACCATTGGTTGAGCCTGCAATGGGACGGCGAACACCTGCACGTGCTGCAATTGC‑CGTTCAGTGCAATTACCGCCttcgccctgaatcggttccatcaacacggcggt > 2:203195‑M1/1‑97 (MQ=255) gCCGGCCCGGCACACGCACCATTGGTTGAGCCTGCAATGGGACGGCGAACACCTGCACGTGCTGCAATTGC‑CGTTCAGTGCAATTACCGCCGTGTTGATg < 4:296015/100‑1 (MQ=255) gCCGGCCCGGCACACGCACCATTGGTTGAGCCTGCAATGGGACGGCGAACACCTGCACGTGCTGCAATTGC‑CGTTCAGTGCAATTACCGCCGTGTTGATGGAACCGATTCAGGGCGAAGGCGGTATCAACGAGTTCGCGGCCGAGTTc < 1:15974/148‑1 (MQ=255) gCCGGCCCGGCACACGCACCATTGGTTGAGCCTGCAATGGGACGGCGAACACCTGCACGTGCTGCAATTGC‑CGTTCAGTGCAATTACCGCCGTGTTGATGGAACCGATTCAGGGCGAAGGCGGTATCAACGAGTTCGCGGCCGAGTTc > 1:204716/1‑148 (MQ=255) ccggcACACGCACCATTGGTTGAGCCTGCAATGGGACGGCGAACACCTGCACGTGCTGCAATTGC‑CGTTCAGTGCAATTACCGCCGTGTTGATGGAACCGATTCAGGGCGAAGGCGGTATCAACGAGTTCGCGGCCGAGTTCTATCTgg < 2:204716/149‑1 (MQ=255) gcACACGCACCATTGGTTGAGCCTGCAATGGGACGGCGAACACCTGCACGTGCTGCAATTGC‑CGTTCAGTGCAATTACCGCCGTGTTGATGGAACCGATTCAGGGCGAAGGCGGTATCAACGAGTTCGCGGCCGAGTTCTATCTGGGGc > 4:93202/1‑149 (MQ=255) gCACCATTGGTTGAGCCTGCAATGGGACGGCGAACACCTGCACGTGCTGCAATTGC‑CGTTCAGTGCAATTACCGCCGTGTTGATGGAACCGATTCAGGGCGAAGGCGGTATCAACGAGTTCGCGGCCGAGTTCTATCTGGGGCTgcgc > 8:128889/1‑148 (MQ=255) cATTGGTTGAGCCTGCAATGGGACGGCGAACACCTGCACGTGCTGCAATTGC‑CGTTCAGTGCAATTACCGCCGTGTTGATGGAACCGATTCAGGGCGAAGGCGGTATCAACGAGTTCGCGGCCGAGTTCTATCTGGGGCTGCGCAAGCt < 3:203577/149‑1 (MQ=255) ttGGTTGAGCCTGCAATGGGACGGCGAACACCTGCACGTGCTGCAATTGC‑CGTTCAGTGCAATTACCGCCGTGTTGATGGAACCGATTCAGGGCGAAGGCGGTATCAACGAGTTCGCGGCCGAGTTCTATCTGGGGCTGCGCAAGCtgt < 3:93202/149‑1 (MQ=255) gTTGAGCCTGCAATGGGACGGCGAACACCTGCACGTGCTGCAATTGC‑CGTTCAGTGCAATTACCACCGTGTTGATGGAACCGATTCAGGGCGAAGGCGGTATCAACGAGTTCGCGGCCGAGt > 8:190289/1‑122 (MQ=255) gTTGAGCCTGCAATGGGACGGCGAACACCTGCACGTGCTGCAATTGC‑CGTTCAGTGCAATTACCACCGTGTTGATGGAACCGATTCAGGGCGAAGGCGGTATCAACGAGTTCGCGGCCGAGt < 7:190289/122‑1 (MQ=255) gCGAACACCTGCACGTGCTGCAATTGCGCGTTCAGTGCAATTACCGCCGTGTTGATGGAACCGATTCAGGGCGAAGGCGGTATCAACGAGTTCGCGGCCGAGTTCTATCTGGGGCTGCGCAAGCTGTGTAACGAGCAACAATGCCCGCt > 1:169738/1‑149 (MQ=255) gCGAACACCTGCACGTGCTGCAATTGC‑CGTTCAGTGCAATTACCGCCGTGTTGATGGAACCGATTCAGGGCGAAGGCGGTATCAACGAGTTCGCGGCCGAGTTCTATCTGGGGCTGCGCAAGCTGTGTAACGAGCAACAATGCCCGCtg < 2:169738/149‑1 (MQ=255) cGAACACCTGCACGTGCTGCAATTGC‑CGTTCAGTGCAATTACCGCCGTGTTGATGGAACCGATTCAGGGCGAAGGCGGTATCAACGAGTTCGCGGCCGAGTTCTATCTGGGGCTGCGCAAGCTGTGTAACGAGCAACAATGCCCGCtgg > 6:168609/1‑149 (MQ=255) aaCACCTGCACGTGCTGCAATTGC‑CGTTCAGTGCAATTACCGCCGTGTTGATGGAACCGATTCAGGGCGAAGGCGGTATCAACGAGTTCGCGGCCGAGTTCTATCTGGGGCTGCGCAAGCTGTGTAACGAGCAACAAt > 8:80270/1‑138 (MQ=255) aaCACCTGCACGTGCTGCAATTGC‑CGTTCAGTGCAATTACCGCCGTGTTGATGGAACCGATTCAGGGCGAAGGCGGTATCAACGAGTTCGCGGCCGAGTTCTATCTGGGGCTGCGCAAGCTGTGTAACGAGCAACAAt < 7:80270/138‑1 (MQ=255) cTGCACGTGCTGCAATTGC‑CGTTCAGTGCAATTACCGCCGTGTTGATGGAACCGATTCAGGGCGAAGGCGGTATCAACGAGTTCGCGGCCGAGTTCTATCTGGGGCTGCGCAAGCtgt > 3:241405/1‑118 (MQ=255) cTGCACGTGCTGCAATTGC‑CGTTCAGTGCAATTACCGCCGTGTTGATGGAACCGATTCAGGGCGAAGGCGGTATCAACGAGTTCGCGGCCGAGTTCTATCTGGGGCTGCGCAAGCtgt < 4:241405/118‑1 (MQ=255) cTGCACGTGCTGCAATTGC‑CGTTCAGTGCAATTACCGCCGTGTTGATGGAACCGATTCAGGGCGAAGGCGGTATCAACGAGTTCGCGGCCGAGTTCTATCTGGGGCTGCGCAAGCTGTGTAACGAGCAACAATGCCCGCTGGTGGTCGa > 6:29497/1‑149 (MQ=255) aCGTGCTGCAATTGC‑CGTTCAGTGCAATTACCGCCGTGTTGATGGAACCGATTCAGGGCGAAGGCGGTATCAACGAGTTCGCGGCCGAGTTCTATCTGGGGCTGCGCAAGCTGTGTACCGAGCCACAATGCCCGCTGGTGGTCGATg > 7:74193/1‑147 (MQ=255) aCGTGCTGCAATTGC‑CGTTCAGTGCAATTACCGCCGTGTTGATGGAACCGATTCAGGGCGAAGGCGGTATCAACGAGTTCGCGGCCGAGTTCTATCTGGGGCTGCGCAAGCTGTGTAACGAGCAACAATGCCCGCTGGTGGTCGATGaa < 7:128889/149‑1 (MQ=255) ctgcAATTGC‑CGTTCAGTGCAATTACCGCCGTGTTGATGGAACCGATTCAGGGCGAAGGCGGTATCAACGAGTTCGCGGCCGAGTTCTATCTGGGGCTGCGCAAGCTGTGTAACGAGCAACAATGCCCGCTGGTGGTCGATGAAGTg > 3:208598/1‑147 (MQ=255) cAATTGC‑CGTTCAGTGCAATTACCGCCGTGTTGATGGAACCGATTCAGGGCGAAGGCGGTATCAACGAGTTCGCGGCCGAGTTCTATCTGGGGCTGCGCAAGc > 7:235892/1‑103 (MQ=255) cAATTGC‑CGTTCAGTGCAATTACCGCCGTGGTGATGGAACCGATTCAGGGCGAAGGCGGTATCAACGAGTTCGCGGCCGAGTTCTATCTGGGGCTGCGCAAGc < 8:235892/103‑1 (MQ=255) tGCAATTACCGCCGTGTTGATGGAACCGATTCAGGGCGAAGGCGGTATCAACGAGTTCGCGGCCGAGTTCTATCTGGGGCTGCGCAAGCTGTGTAACGAGCAACAATGc > 3:46903/1‑109 (MQ=255) tGCAATTACCGCCGTGTTGATGGAACCGATTCAGGGCGAAGGCGGTATCAACGAGTTCGCGGCCGAGTTCTATCTGGGGCTGCGCAAGCTGTGTAACGAGCAACAATGc < 4:46903/109‑1 (MQ=255) cAATTACCGCCGTGTTGATGGAACCGATTCAGGACGAAggcggtaattgcactgaacggcaattgcagcacgtgcaggtgttcgccgtcccattgcaggctcaaccaatggtgcgtgtgccgggccggcaattcctgcaactgatgggg < 5:149809‑M2/149‑112 (MQ=255) aCCGCCttcgccctgaatcggttccatcaacacggcggtaattgcactgaacggcaattgcagcacgtgcaggtgttcgccgtcccattgcaggctcaaccaatggtgcgtgtgccgggccggcaattcctgcaactgatggg < 7:178957‑M1/143‑138 (MQ=255) aCCGCCttcgccctgaatcggttccatcaacacggcggtaattgcactgaacggcaattgcagcacgtgcaggtgttcgccgtcccattgcaggctcaaccaatggtgcgtgtgccgggccggcaattcctgcaactgatggg > 8:178957‑M1/1‑6 (MQ=255) aCCGCCGTGTTGATGGAACCGATTCAGGGCGAAggcggtaattgcactgaacggcaattgcagcacgtgcaggtgttcgccgtcccattgcaggctcaaccaatggtgcgtgtgccgggccggcaattcc > 2:203195‑M2/1‑33 (MQ=255) aCCGCCGTGTTGATGGAACCGATTCAGGGCGAAggcggtaattgcactgaacggcaattgcagcacgtgcaggtgttcgccgtcccattgcaggctcaaccaatggtgcgtgtgccgggccggcaattcc < 1:203195‑M2/130‑98 (MQ=255) cGCCttcgccctgaatcggttccatcaacacggcggtaattgcactgaacggcaattgcagcacgtgcaggtgttcgccgtcccattgcaggctcaaccaatggtgcgtgtgccgggccggcaattcctgcaactgatggggctgctgt < 2:15974‑M1/149‑146 (MQ=255) cttcgccctgaatcggttccatcaacacggcggtaattgcactgaacggcaattgcagcacgtgcaggtgttcgccgtcccattgcaggctcaaccaatggtgcgtgtgccgggccggcaattcctgcaactgatggggctactgtggg < 2:32273‑M1/149‑149 (MQ=255) cgTGTTGATGGAACCGATTCAGGGCGAAGGCGGTATCAACGAGTTCGCGGCCGAGTTCTATCTGGGGCTGCGCAAGCTGTGTAACGAGCAACAATGCCCGCTGGTGGGCGATGAAGTGCAGTCGGGTTTTGGTCGCGCCGGGACGTTTc < 2:22184/149‑1 (MQ=255) | GGCTGAACGTCGAGTTCATCGACCCACAGCAGCCCCATCAGTTGCAGGAATTGCCGGCCCGGCACACGCACCATTGGTTGAGCCTGCAATGGGACGGCGAACACCTGCACGTGCTGCAATTGC‑CGTTCAGTGCAATTACCGCCGTGTTGATGGAACCGATTCAGGGCGAAGGCGGTATCAACGAGTTCGCGGCCGAGTTCTATCTGGGGCTGCGCAAGCTGTGTAACGAGCAACAATGCCCGCTGGTGGTCGATGAAGTGCAGTCGGGTTTTGGTCGCGCCGGGACGTTTC > NC_002947/3168809‑3169099 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |