New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3174829 =	33 (0.670)	3 (0.070)	3/238	NT	7.9%	coding (130/2610 nt)	PP_2787	transporter
	?	NC_002947	3174928 =	39 (0.850)					coding (229/2610 nt)	PP_2787	transporter

ATCTGGAACCCTCATTCATGGAAAGATACCTGAACTTCGTCGAGCGCTATGCGCGGGCAATTGTGTTCGTGTTGGTGGCGATCACCGCCTACTTCACCTACACCCTCGGCGCGCTGATGTCGGACACCAATCCGTATCTGCTCAAGGACACTCACCCGGCGCGCAAGACGATCATTGATCTGCAGCGCGAGTTCACCGGCACCTATGACTCGGTCATGGTGGCGCTGAACAACCCCGTGAGTGTCTTCAACACCACGTCGCTGAACGCCCAGTTCGAGCTGTCCCAGGCCA  >  NC_002947/3174683‑3174973                                                                                                                                                   |                                                                                                                                                 aTCTGGAACCCTCATTCATGGAAAGATACCTGAACTTCGTCGAGCGCTATGCGCGGGCAATTGTGTTCGTGTTGGTGGCGATCACCGCCTACTTCACCTACACCCTCGGCGCGCTGATGTCGGACACCAATCCGTATCTGCTCAAGGac                                                                                                                                                <  7:20026/149‑1 (MQ=255)   caccagcaaaccctgggcatcagggtcgtcactgtgcaggccgacgatgcgctgcagttcgacacggtcctcatcgttcgccagcatcaactggcgtatggcctgggacagctcgaactgggcgttcagcgacgtggtgttgaaGacac                                                                                                                                              <  7:158369‑M1/5‑1 (MQ=255)     ggAACCCTCATTCATGGAAAGATACCTGAACTTCGTCGAGCGCTATGCGCGGGCAATTGTGTTCGTGTTGGTGGCGATCTCCGCCTACTTCACCTACACCCTCGGCGCGCTGATGTCGGACACCAATCCGTATCTGCTCAAGGACACTc                                                                                                                                            >  8:231522/1‑149 (MQ=255)     ggAACCCTCATTCATGGAAAGATACCTGAACTTCGTCGAGCGCTATGCGCGGGCAATTGTGTTCGTGTTGGTGGCGATCACCGCCTACTTCACCTACACCCTCGGCGCGCTGATGTCGGACACCAATCCGTATCTGCTCAAGGACACt                                                                                                                                             >  1:7782/1‑148 (MQ=255)                     gAAAGATACCTGAACTTCGTCGAGCGCTATGCGCGGGCAATTGTGTTCGTGTTGGTGGCGATCACCGCCTACTTCACCTACACCCTCGGCGCGCTGATGTCGGACACCAATCCGTATCTGCTCAAGGACACTCACCCGGCGCGCAAGa                                                                                                                             <  6:276522/148‑1 (MQ=255)                          aTACCTGAACTTCGTCGAGCGCTATGCGCGGGCAATTGTGTTCGTGTTGGTGGCGATCACCGCCTACTTCACCTACACCCTCGGCGCGCTGATGTCGGACACCAATCCGTATCTGCTCAAGGACACTCACCCGGCGCGCAAGACGATCa                                                                                                                       >  2:50341/1‑149 (MQ=255)                          aTACCTGAACTTCGTCGAGCGCTATGCGCGGGCAATTGTGTTCGTGTTGGTGGCGATCACCGCCTACTTCACCTACACCCTCGGCGCGCTGATGTCGGACACCAATCCGTATCTGCTCAAGGACACTCACCCGGCGCGCAAGACGATCa                                                                                                                       <  2:7782/149‑1 (MQ=255)                             ccTGAACTTCGTCGAGCGCTATGCGCGGGCAATTGTGTTCGTGTTGGTGGCGATCACCGCCTACTTCACCTACACCCTCGGCGCGCTGATGTCGGACACCAATCCGTATCTGCTCAAGGACACTCACCCGGCGCGCAAGACGATCATTg                                                                                                                    <  4:162795/149‑1 (MQ=255)                                 aaCTTCGTCGAGCGCTATGCGCGGGCAATTGTGTTCGTGTTGGTGGCGATCACCGCCTACTTCACCTACACCCTCGGCGCGCTGATGTCGGACACCAATCCGTATCTGCTCAAGGACACTCACCCGGCGCGCAAGACGATCATTGATCt                                                                                                                >  7:173858/1‑149 (MQ=255)                                          gAGCGCTATGCGCGGGCAATTGTGTTCGTGTTGGTGGCGATCTCCGCCTACTTCACCTACACCCTCGGCGCGCTGATGTCGGACACCAATCCGTATCTGCTCAAGGACACTCACCCGGCGCGCAAGACGATCATTGATCTGCAGCGCGa                                                                                                       <  7:231522/149‑1 (MQ=255)                                                  tGCGCGGGCAATTGTGTTCGTGTTGGTGGCGATCACCGCCTACTTCACCTACACCCTCGGCGCGCTGATGTCGGACACCAATCCGTATCTGCTCAAGGACACTCACCCGGCGCGCAAGACGATCATTGATCTGCAGCGCGAGTTCACCg                                                                                               <  2:308773/149‑1 (MQ=255)                                                        ggCAATTGTGTTCGTGTTGGTGGCGATCACCGCCTACTTCACCTACACCCTCGGCGCGCTGATGTCGGACACCAATCCGTATCTGCTCAAGGACACTCACCCGGCGCGCAAGACGATCATTGATCTGCAGCGCGAGTTCACCGGCACCt                                                                                         <  5:302923/149‑1 (MQ=255)                                                         cagttcgacacggtcctcatcgttcgccagcatcaactggcgtatggcctgggacagctcgaactgggcgttcagcgacgtggtgttgaaGACACTCACCCGGCGCGCAAGACGATCATTGATCTGCAGCGCGAGTTCACCGGCACCTa                                                                                        <  4:294578‑M1/59‑1 (MQ=255)                                                                               cGATCACCGCCTACTTCACCTACACCCTCGGCGCGCTGATGTCGGACACCAATCCGTATCTGCTCAAGGACACTCACCCGGCGCGCAAGACGATCATTGATCTGCAGCGCGAGTTCACCGGCACCTATGACTCGGTCATGGTGGCGCTg                                                                  <  5:268100/149‑1 (MQ=255)                                                                                gATCACCGCCTACTTCACCTACACCCTCGGCGCGCTGATGTCGGACACCAATCCGTATCTGCTCAAGGACACTCACCCGGCGCGCAAGACGATCATTGATCTGCAGCGCGAGTTCACCGGCACCTATGACTCGGTCATGGTGGCGCTGa                                                                 <  1:50341/149‑1 (MQ=255)                                                                                      cGCCTACTTCACCTACACCCTCGGCGCGCTGATGTCGGACACCAATCCGTCTCTCCGCAAGGACACTCACCCGGCGCGCAAGACGATCATTGATCTGCAGCGCGAGTTCACCGGCACCTATGACTCGGTCATGGTGGCGCTGAACAAcc                                                           <  6:95265/149‑1 (MQ=255)                                                                                         cTACTTCACCTACACCCTCGGCGCGCTGATGTCGGCCACCAATCCGTATCTGCTCAAGGACACTCACCCGGCGCGCAAGACGATCATTGATCTGCAGCGCGAGTTCACCGGCCCCTATGACTCGGTCATGGTGGCGCTGAACACCCCCg                                                        >  2:63322/1‑149 (MQ=255)                                                                                           aactggcgtatggcctgggacagctcgaactgggcgttcagcgacgtggtgttgaaGACACTCACCCGGCGCGCAAGACGATCATTGATCTGCAGCGCGAGTTCACCGGCACCTATGACTCGGTCATGGTGGCGCTGAACAACCCCGt                                                       >  3:294578‑M1/57‑148 (MQ=255)                                                                                            cTTCACCTACACCCTCGGCGCGCTGATGTCGGACACCAATCCGTATCTGCTCAAGGACACTCACCCGGCGCGCAAGACGATCATTGATCTGCAGCGCGAGTTCACCGGCACCTATGACTCGGTCATGGTGGCGCTGAACAACCCCGTGa                                                     <  8:173858/149‑1 (MQ=255)                                                                                             ttCACCTACACCCTCGGCGCGCTGATGTCGGACACCAATCCGTATCTGCTCAAGGACACTCACCCGGCGCGCAAGACGATCATTGATCTGCAGCGCGAGTTCACCGGCACCTATGACTCGGTCATGGTGGCGCTGAACAACCCCGTGAg                                                    >  8:96654/1‑149 (MQ=255)                                                                                                aCCTACACCCTCGGCGCGCTGATGTCGGACACCAATCCGTATCTGCTCAAGGACACTCACCCGGCGCGCAAGACGATCATTGATCTGCAGCGCGAGTTCACCGGCACCTATGACTCGGTCATGGTGGCGCTGAACAACCCCGTGAgt                                                   >  5:229686/1‑147 (MQ=255)                                                                                                aCCTACACCCTCGGCGCGCTGATGTCGGACACCAATCCGTATCTGCTCAAGGACACTCACCCGGCGCGCAAGACGATCATTGATCTGCAGCGCGAGTTCACCGGCACCTATGACTCGGTCATGGTGGCGCTGAACAACCCCGTGAgt                                                   <  6:229686/147‑1 (MQ=255)                                                                                                  cTACACCCTCGGCGCGCTGATGTCGGACACCAATCCGTATCTGCTCAAGGACACTCACCCGGCGCGCAAGACGATCATTGATCTGCAGCGCGAGTTCACCGGCACCTATGACTCGGTc                                                                              <  1:275568/118‑1 (MQ=255)                                                                                                  cTACACCCTCGGCGCGCTGATGTCGGACACCAATCCGTATCTGCTCAAGGACACTCACCCGGCGCGCAAGACGATCATTGATCTGCAGCGCGAGTTCACCGGCACCTATGACTCGGTc                                                                              >  2:275568/1‑118 (MQ=255)                                                                                                     tggcctgggacagctcgaactgggcgttcagcgacgtggtgttgaaGACACTCACCCGGCGCGCAAGACGATCATTGATCTGCAGCGCGAGTTCACCGGCACCTATGACTCGGTCATGGTGGCGCTGAACAACCCCGTGAGTGTCTTc                                             >  6:189433‑M1/47‑148 (MQ=255)                                                                                                        ccTCGGCGCGCTGATGTCGGACACCAATCCGTATCTGCTCAAGGACACTCACCCGGCGCGCAAGACGATCATTGATCTGCAGCGCGAGTTCACCGGCACCTATGACTCGGTCATGGTGGCGCTGAACAACCCCGTGAGTGTCTTCAaca                                         >  2:19710/1‑149 (MQ=255)                                                                                                          tCGGCGCGCTGATGTCGGACACCAATCCGTATCTGCTCAAGGACACTCACCCGGCGCGCAAGACGATCATTGATCTGCAGCGCGAGTTCACCGGCACCTATGACTCGGTCATGGTGGCGCTGAACAACCCCGTGAGTGTCTTCAacac                                        >  6:221081/1‑148 (MQ=255)                                                                                                           cGGCGCGCTGATGTCGGACACCAATCCGTATCTGCTCAAGGACACTCACCCGGCGCGCAAGACGATCATTGATCTGCAGCGCGAGTTCACCGGCACCTATGACTCGGTCATGGTGGCGCTGAACAACCCCGTGa                                                     <  7:128913/134‑1 (MQ=255)                                                                                                           cGGCGCGCTGATGTCGGACACCAATCCGTATCTGCTCAAGGACACTCACCCGGCGCGCAAGACGATCATTGATCTGCAGCGCGAGTTCACCGGCACCTATGACTCGGTCATGGTGGCGCTGAACAACCCCGTGa                                                     >  8:128913/1‑134 (MQ=255)                                                                                                                   tGATGTCGGACACCAATCCGTATCTGCTCAAGGACACTCACCCGGCGCGCAAGACGATCATTGATCTGCAGCGCGAGTTCACCGGCACCTATGACTCGGTCATGGTGGCGCTGAACAACCCCGTGAGTGTCTTCAACACCACGTCGCt                               >  6:28586/1‑148 (MQ=255)                                                                                                                                cAATCCGTATCTGCTCAAGGACACTCACCCGGCGCGCAAGACGATCATTGATCTGCAGCGCGAGTTCACCGGCACCTATGACTCGGTCATGGTGGCGCTGAACAACCCCGTGAGTGTc                                                >  3:218959/1‑118 (MQ=255)                                                                                                                                cAATCCGTATCTGCTCAAGGACACTCACCCGGCGCGCAAGACGATCATTGATCTGCAGCGCGAGTTCACCGGCACCTATGACTCGGTCATGGTGGCGCTGAACAACCCCGTGAGTGTc                                                <  4:218959/118‑1 (MQ=255)                                                                                                                                cAATCCGTATCTGCTCAAGGACACTCACCCGGCGCGCAAGACGATCATTGATCTGCAGCGCGAGTTCACCGGCACCTATGACTCGGTCATGGTGGCGCTGAACAACCCCGTGAGTGTCTTCAACACCACGTCGCTGAACGCCCAGTTc                  >  1:310193/1‑148 (MQ=255)                                                                                                                                 aaTCCGTATCTGCTCAAGGACACTCACCCGGCGCGCAAGACGATCATTGATCTGCAGCGCGAGTTCACCGGCACCTATGACTCGGTCATGGTGGCGCTGAACAACCCCGTGAGTGTCTTCAACACCACGTCGCTGAACGCCCAGTTCGa                <  2:138373/149‑1 (MQ=255)                                                                                                                                 aaTCCGTATCTGCTCAAGGACACTCACCCGGCGCGCAAGACGATCATTGATCTGCAGCGCGAGTTCACCGGCACCTATGACTCGGTCATGGTGGCGCTGAACAACCCCGTGAGTGTCTTCAACACCACGTCGCTGAACGCCCAGTTCGa                <  7:96654/149‑1 (MQ=255)                                                                                                                                   tCCGTATCTGCTCAAGGACACTCACCCGGCGCGCAAGACGATCATTGATCTGCAGCGCGAGTTCACCGGCACCTATGACTCGGTCATGGTGGCGCTGAACAACCCCGTGAGTGTCTTCAACACCACGTCGCTGAACGCCCAGTTCGAGc              <  1:19710/149‑1 (MQ=255)                                                                                                                                         tCTGCTCAAGGACACTCACCCGGCGCGCAAGACGATCATTGATCTGCAGCGCGAGTTCACCGGCACCTATGACTCGGTCATGGTGGCGCTGAACAACCCCGTGAGTGTCTTCAACACCACGTCGCTGAACGCCCAGTTCGAGCTGTcc         >  1:283407/1‑148 (MQ=255)                                                                                                                                            gCTCAAGGACACTCACCCGGCGCGCAAGACGATCATTGATCTGCAGCGCGAGTTCACCGGCACCTATGACTCGGTCATGGTGGCGCTGAACAACCCCGTGAGTGTCTTCAACACCACGTCGCTGAACGCCCAGTTCGAGCTGTCCCAgg     >  6:269586/1‑149 (MQ=255)                                                                                                                                              tCAAGGACACTCACCCGGCGCGCAAGACGATCATTGATCTGCAGCGCGAGTTCACCGGCACCTATGACTCGGTCATGGTGGCGCTGAACAACCCCGTGAGTGTCTTCAACACCACGTCGCTGAACTCACAGTTCGAGCTGTCCCAGGc    >  6:98150/1‑148 (MQ=255)                                                                                                                                              tCAAGGACACTCACCCGGCGCGCAAGACGATCATTGATCTGCAGCGCGAGTTCACCGGCACCTATGACTCGGTCATGGTGGCGCTGAACAACCCCGTGAGTGTCTTCAACACCACGTCGCTGAACGCCCAGTTCg                 >  7:15821/1‑135 (MQ=255)                                                                                                                                              tCAAGGACACTCACCCGGCGCGCAAGACGATCATTGATCTGCAGCGCGAGTTCACCGGCACCTATGACTCGGTCATGGTGGCGCTGAACAACCCCGTGAGTGTCTTCAACACCACGTCGCTGAACGCCCAGTTCg                 <  8:15821/135‑1 (MQ=255)                                                                                                                                                aaGGACACTCACCCGGCGCGCAAGACGATCATTGATCTGCAGCGCGAGTTCACCGGCACCTATGACTCGGTCATGGTGGCGCTGAACAACCCCGTGAGTGTCTTCAACACCACGTCGCTGAAc                           <  3:165873/123‑1 (MQ=255)                                                                                                                                                aaGGACACTCACCCGGCGCGCAAGACGATCATTGATCTGCAGCGCGAGTTCACCGGCACCTATGACTCGGTCATGGTGGCGCTGAACAACCCCGTGAGTGTCTTCAACACCACGTCGCTGAAc                           >  4:165873/1‑123 (MQ=255)                                                                                                                                                aaGGACACTCACCCGGCGCGCAAGACGATCATTGATCTGCAGCGCGAGTTCACCGGCACCTATGACTCGGTCATGGTGGCGCTGAACAACCCCGTGAGTGTCTTCAACACCACGTCGCTGAACGCCCAGTTCGAGCTGTCCCAGGCCa  >  5:126752/1‑148 (MQ=255)                                                                                                                                                   |                                                                                                                                                 ATCTGGAACCCTCATTCATGGAAAGATACCTGAACTTCGTCGAGCGCTATGCGCGGGCAATTGTGTTCGTGTTGGTGGCGATCACCGCCTACTTCACCTACACCCTCGGCGCGCTGATGTCGGACACCAATCCGTATCTGCTCAAGGACACTCACCCGGCGCGCAAGACGATCATTGATCTGCAGCGCGAGTTCACCGGCACCTATGACTCGGTCATGGTGGCGCTGAACAACCCCGTGAGTGTCTTCAACACCACGTCGCTGAACGCCCAGTTCGAGCTGTCCCAGGCCA  >  NC_002947/3174683‑3174973

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.