New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3174829 =	33 (0.670)	3 (0.070)	3/238	NT	7.9%	coding (130/2610 nt)	PP_2787	transporter
	?	NC_002947	3174928 =	39 (0.850)					coding (229/2610 nt)	PP_2787	transporter

CACCCTCGGCGCGCTGATGTCGGACACCAATCCGTATCTGCTCAAGGACACTCACCCGGCGCGCAAGACGATCATTGATCTGCAGCGCGAGTTCACCGGCACCTATGACTCGGTCATGGTGGCGCTGAACAACCCCGTGAGTGTCTTCAACACCACGTCGCTGAACGCCCAGTTCGAGCTGTCCCAGGCCATACGCCAGTTGATGCTGG‑CGAACGATGAGGACCGTGTCGAACTGCAGCGCATCGTCGGCCTGCACAGTGACGACCCTGATGCCCAGGGTTTGCTGGTGC  >  NC_002947/3174783‑3175072                                                                                                                                                  |                                                                                                                                                  tggcctgggacagctcgaactgggcgttcagcgacgtggtgttgaaGACACTCACCCGGCGCGCAAGACGATCATTGATCTGCAGCGCGAGTTCACCGGCACCTATGACTCGGTCATGGTGGCGCTGAACAACCCCGTGAGTGTCTTc                                                                                                                                                 >  6:189433‑M1/47‑148 (MQ=255)    ccTCGGCGCGCTGATGTCGGACACCAATCCGTATCTGCTCAAGGACACTCACCCGGCGCGCAAGACGATCATTGATCTGCAGCGCGAGTTCACCGGCACCTATGACTCGGTCATGGTGGCGCTGAACAACCCCGTGAGTGTCTTCAaca                                                                                                                                             >  2:19710/1‑149 (MQ=255)      tCGGCGCGCTGATGTCGGACACCAATCCGTATCTGCTCAAGGACACTCACCCGGCGCGCAAGACGATCATTGATCTGCAGCGCGAGTTCACCGGCACCTATGACTCGGTCATGGTGGCGCTGAACAACCCCGTGAGTGTCTTCAacac                                                                                                                                            >  6:221081/1‑148 (MQ=255)               tGATGTCGGACACCAATCCGTATCTGCTCAAGGACACTCACCCGGCGCGCAAGACGATCATTGATCTGCAGCGCGAGTTCACCGGCACCTATGACTCGGTCATGGTGGCGCTGAACAACCCCGTGAGTGTCTTCAACACCACGTCGCt                                                                                                                                   >  6:28586/1‑148 (MQ=255)                            cAATCCGTATCTGCTCAAGGACACTCACCCGGCGCGCAAGACGATCATTGATCTGCAGCGCGAGTTCACCGGCACCTATGACTCGGTCATGGTGGCGCTGAACAACCCCGTGAGTGTCTTCAACACCACGTCGCTGAACGCCCAGTTc                                                                                                                      >  1:310193/1‑148 (MQ=255)                             aaTCCGTATCTGCTCAAGGACACTCACCCGGCGCGCAAGACGATCATTGATCTGCAGCGCGAGTTCACCGGCACCTATGACTCGGTCATGGTGGCGCTGAACAACCCCGTGAGTGTCTTCAACACCACGTCGCTGAACGCCCAGTTCGa                                                                                                                    <  2:138373/149‑1 (MQ=255)                             aaTCCGTATCTGCTCAAGGACACTCACCCGGCGCGCAAGACGATCATTGATCTGCAGCGCGAGTTCACCGGCACCTATGACTCGGTCATGGTGGCGCTGAACAACCCCGTGAGTGTCTTCAACACCACGTCGCTGAACGCCCAGTTCGa                                                                                                                    <  7:96654/149‑1 (MQ=255)                               tCCGTATCTGCTCAAGGACACTCACCCGGCGCGCAAGACGATCATTGATCTGCAGCGCGAGTTCACCGGCACCTATGACTCGGTCATGGTGGCGCTGAACAACCCCGTGAGTGTCTTCAACACCACGTCGCTGAACGCCCAGTTCGAGc                                                                                                                  <  1:19710/149‑1 (MQ=255)                                     tCTGCTCAAGGACACTCACCCGGCGCGCAAGACGATCATTGATCTGCAGCGCGAGTTCACCGGCACCTATGACTCGGTCATGGTGGCGCTGAACAACCCCGTGAGTGTCTTCAACACCACGTCGCTGAACGCCCAGTTCGAGCTGTcc                                                                                                             >  1:283407/1‑148 (MQ=255)                                        gCTCAAGGACACTCACCCGGCGCGCAAGACGATCATTGATCTGCAGCGCGAGTTCACCGGCACCTATGACTCGGTCATGGTGGCGCTGAACAACCCCGTGAGTGTCTTCAACACCACGTCGCTGAACGCCCAGTTCGAGCTGTCCCAgg                                                                                                         >  6:269586/1‑149 (MQ=255)                                          tCAAGGACACTCACCCGGCGCGCAAGACGATCATTGATCTGCAGCGCGAGTTCACCGGCACCTATGACTCGGTCATGGTGGCGCTGAACAACCCCGTGAGTGTCTTCAACACCACGTCGCTGAACTCACAGTTCGAGCTGTCCCAGGc                                                                                                        >  6:98150/1‑148 (MQ=255)                                          tCAAGGACACTCACCCGGCGCGCAAGACGATCATTGATCTGCAGCGCGAGTTCACCGGCACCTATGACTCGGTCATGGTGGCGCTGAACAACCCCGTGAGTGTCTTCAACACCACGTCGCTGAACGCCCAGTTCg                                                                                                                     <  8:15821/135‑1 (MQ=255)                                          tCAAGGACACTCACCCGGCGCGCAAGACGATCATTGATCTGCAGCGCGAGTTCACCGGCACCTATGACTCGGTCATGGTGGCGCTGAACAACCCCGTGAGTGTCTTCAACACCACGTCGCTGAACGCCCAGTTCg                                                                                                                     >  7:15821/1‑135 (MQ=255)                                            gaagacactcacggggttgttcagcgccaccatgaccgagtcataggtgccggtgaactcgcgctgcagatcaatgatcgtcttgcgcgccgggtgagtgtcTTCAACACCACGTCGCTGAACGCCCAGTTCGAGCTGTCCCAGGCCa                                                                                                      >  6:189433‑M2/103‑148 (MQ=255)                                            aaGGACACTCACCCGGCGCGCAAGACGATCATTGATCTGCAGCGCGAGTTCACCGGCACCTATGACTCGGTCATGGTGGCGCTGAACAACCCCGTGAGTGTCTTCAACACCACGTCGCTGAAc                                                                                                                               >  4:165873/1‑123 (MQ=255)                                            aaGGACACTCACCCGGCGCGCAAGACGATCATTGATCTGCAGCGCGAGTTCACCGGCACCTATGACTCGGTCATGGTGGCGCTGAACAACCCCGTGAGTGTCTTCAACACCACGTCGCTGAAc                                                                                                                               <  3:165873/123‑1 (MQ=255)                                            aaGGACACTCACCCGGCGCGCAAGACGATCATTGATCTGCAGCGCGAGTTCACCGGCACCTATGACTCGGTCATGGTGGCGCTGAACAACCCCGTGAGTGTCTTCAACACCACGTCGCTGAACGCCCAGTTCGAGCTGTCCCAGGCCa                                                                                                      >  5:126752/1‑148 (MQ=255)                                                 CACTCACCCGGCGCGCAAGACGATCATTGATCTGCAGCGCGAGTTCACCGGCACCTATGACTCGGTCATGGTGGCGCTGAACAACCCCGTGAGTGTCTTCAACACCACGTCGCTGAACGCCCAGTTCGAGCTGTCCCAGGCCATACGc                                                                                                 <  1:81881‑M1/148‑1 (MQ=255)                                                    TCACCCGGCGCGCAAGACGATCATTGATCTGCAGCGCGAGTTCACCGGCACCTATGACTCGGTCATGGTGGCGCTGAACAACCCCGTGAGTGTCTTCAACACCACGTCGCTGAACGCCCAGTTCGAGCTGTCCCAGGCCATACGCCAGt                                                                                             <  1:132456‑M1/149‑1 (MQ=255)                                                    TCACCCGGCGCGCAAGACGATCATTGATCTGCAGCGCGAGTTCACCGGCACCTATGACTCGGTCATGGTGGCGCTGAACAACCCCGTGAGTGTCTTCAACACCACGTCGCTGAACGCCCAGTTCGAGCTGTCCCAGGCCATACGCCAGt                                                                                             <  1:279916‑M1/149‑1 (MQ=255)                                                    TCACCCGGCGCGCAAGACGATCATTGATCTGCAGCGCGAGTTCACCGGCACCTATGACTCGGTCATGGTGGAGCTGAACAACCCCGTGAGTGTCTTCAACACCACGTCGCTGAACGCCCAGTTCGAGCTGTCCCAGGCCATACGCCAGt                                                                                             <  2:237399‑M1/149‑1 (MQ=255)                                                      acggggttgttcagcgccaccatgaccgagtcataggtgccggtgaactcgcgctgcagatcaatgatcgtcttgcgcgccgggtgagtgtcTTCAACACCACGTCGCTGAACGCCCAGTTCGAGCTGTCCCAGGCCATACGCCAGtt                                                                                            >  3:294578‑M2/93‑148 (MQ=255)                                                      ACCCGGCGCGCAAGACGATCATTGATCTGCAGCGCGAGTTCACCGGCACCTATGACTCGGTCATGGTGGCGCTGAACAACCCCGTGAGTGTCTTCAacac                                                                                                                                            <  7:205614‑M1/100‑1 (MQ=255)                                                      ACCCGGCGCGCAAGACGATCATTGATCTGCAGCGCGAGTTCACCGGCACCTATGACTCGGTCATGGTGGCGCTGAACAACCCCGTGAGTGTCTTCAacac                                                                                                                                            >  8:205614‑M1/1‑100 (MQ=255)                                                      ACCCGGCGCGCAAGACGATCATTGATCTGCAGCGCGAGTTCACCGGCACCTATGACTCGGTCATGGTGGCGCTGAACAACCCCGTGAGTGTCTTCAACACCACGTCGCTGAACGCCCAGTTCGAGCTGTCCCAGGCCATACGCCAGtt                                                                                            <  7:74842‑M1/148‑1 (MQ=255)                                                      ACCCGGCGCGCAAGACGATCATTGATCTGCAGCGCGAGTTCACCGGCACCTATGACTCGGTCATGGTGGCGCTGAACAACCCCGTGAGTGTCTTCAACACCACGTCGCTGAACGCCCAGTTCGAGCTGTCCCAGGCCATACGCCAGtt                                                                                            >  5:269586‑M1/1‑148 (MQ=255)                                                          ggCGCGCAAGACGATCATTGATCTGCAGCGCGAGTTCACCGGCACCTATGACTCGGTCATGGTGGCGCTGAACAACCCCGTGAGTGTCTTCAACACCACGTCGCTGAACGCCCAGTTCGAGCTGTCCCAGGCCATACGCCAGTTGATGc                                                                                       <  5:28586/149‑1 (MQ=255)                                                             gcgcAAGACGATCATTGATCTGCAGCGCGAGTTCACCGGCACCTATGACTCGGTCATGGTGGCGCTGAACAACCCCGTGAGTGTCTTCAACACCACGTCGCTGAACGCCCAGTTCGAGCTGTCCCAGGCCATACGCCAGTTGATGCTgg                                                                                    <  5:221081/149‑1 (MQ=255)                                                                 aaGACGATCATTGATCTGCAGCGCGAGTTCACCGGCACCTATGACTCGGTCATGGTGGCGCTGAACAACCCCGTGAGTGTCTTCAACACCACGTCGCTGAACGCCCAGTTCGAGCTGTCCCAGGCCATACGCCAGTTGATGCTGG‑CGaa                                                                               >  5:246982/1‑149 (MQ=255)                                                                        tCATTGATCTGCAGCGCGAGTTCACCGGCACCTATGACTCGGTCATGGTGGCGCTGAACAACCCCGTGAGTGTCTTCAACACCACGTCGCTGAACGCCCAGTTCGAGCTGTCCCAGGCCATACGCCAGTTGATGCTGG‑CGAACGATGAg                                                                        <  2:310193/149‑1 (MQ=255)                                                                                   cAGCGCGAGTTCACCGGCACCTATGACTCGGTCATGGTGGCGCTGAACAACCCCGTGAGTGTCTTCAACACCACGTCGCTGAACGCCCAGTTCGAGCTGTCCCAgg                                                                                                         >  1:250517/1‑106 (MQ=255)                                                                                   cAGCGCGAGTTCACCGGCACCTATGACTCGGTCATGGTGGCGCTGAACAACCCCGTGAGTGTCTTCAACACCACGTCGCTGAACGCCCAGTTCGAGCTGTCCCAgg                                                                                                         <  2:250517/106‑1 (MQ=255)                                                                                      cgcgAGTTCACCGGCACCTATGACTCGGTCATGGTGGCGCTGAACAACCCCGTGAGTGTCTTCAACACCACGTCGCTGAACGCCCAGTTCGAGCTGTCCCAGGCCATACGCCAGTTGATGCTGG‑CGAACGATGAGGACCGTGTCGAACt                                                          >  7:5629/1‑149 (MQ=255)                                                                                       taggtgccggtgaactcgcgctgcagatcaatgatcgtcttgcgcgccgggtgagtgtcTTCAACACCACGTCGCTGAACGCCCAGTTCGAGCTGTCCCAGGCCATACGCCAGTTGATGCTGG‑CGAACGATGAGGACCGTGTCGAACTg                                                         <  4:294578‑M2/90‑1 (MQ=255)                                                                                               aCCGGCACCTATGACTCGGTCATGGTGGCGCTGAACAACCCCGTGAGTGTCTTCAACACCACGTCGCTGAACGCCCAGTTCGAGCTGTCCCAGGCCATACGCCAGTTGATGCTGG‑CGAACGATGAGGACCGTGTCGAACTGCAGCGCAt                                                 >  7:284724/1‑149 (MQ=255)                                                                                               aCCGGCACCTATGACTCGGTCATGGTGGCGCTGAACAACCCCGTGAGTGTCTTCAACACCACGTCGCTGAACGCCCAGTTCGAGCTGTCCCAGGCCATACGCCAGTTGATGCTGG‑CGAACGATGAGGACCGTGTCGAACTGCAGCGCAt                                                 >  7:16149/1‑149 (MQ=255)                                                                                                       cTATGACTCGGTCATGGTGGCGCTGAACAACCCCGTGAGTGTCTTCAACACCACGTCGCTGAACGCCCAGTTCGAGCTGTCCCAGGCCATACGCCAGTTGATGCTGG‑CGAACGATGAGGACCGTGTCGAACTGCAGCGCATCGTCGGcc                                         >  8:90712/1‑149 (MQ=255)                                                                                                             cTCGGTCATGGTGGCGCTGAACAACCCCGTGAGTGTCTTCAACACCACGTCGCTGAACGCCCAGTTCGAGCTGTCCCAGGCCATACGCCAGTTGATGCTGG‑CGAACGATGAGGACCGTGTCGAACTGCAGCGCATCGTCGGCCTGcac                                    <  2:283407/148‑1 (MQ=255)                                                                                                                ggTCATGGTGGCGCTGAACAACCCCGTGAGTGTCTTCAACACCACGTCGCTGAACGCCCAGTTCGAGCTGTCCCAGGCCATACGCCAGTTGATGCTGG‑CGAACGATGAGGACCGTGTCGAACTGCAGCGCATCGTCGGCCTGCACAg                                  <  8:16149/147‑1 (MQ=255)                                                                                                                  tCATGGTGGCGCTGAACAACCCCGTGAGTGTCTTCAACACCACGTCGCTGAACGCCCAGTTCGAGCTGTCCCAGGCCATACGCCAGTTGATGCTGGCCGAACGATGAGGACCGTGTCGAACTGCAGCGCATCGTCGGCCTGCACAGTga                               <  1:237399/149‑1 (MQ=255)                                                                                                                     tggtggCGCTGAACAACCCCGTGAGTGTCTTCAACACCACGTCGCTGAACGCCCAGTTCGAGCTGTCCCAGGCCATACGCCAGTTGATGCTGG‑CGAACGATGAGGACCGTGTCGAACTGCAGCGCATCGTCGGCCTGCACAGTgacgac                           <  6:246982/149‑1 (MQ=255)                                                                                                                           cgcTGAACAACCCCGTGAGTGTCTTCAACACCACGTCGCTGAACGCCCAGTTCGAGCTGTCCCAGGCCATACGCCAGTTGATGCTGG‑CGAACGATGAGGACCGTGTCGAACTGCAGCGCATCGTCGGCCTGCACAGTGACGACCCTGAt                     <  8:74842/149‑1 (MQ=255)                                                                                                                           cgcTGAACAACCCCGTGAGTGTCTTCAACACCACGTCGCTGAACGCCCAGTTCGAGCTGTCCCAGGCCATACGCCAGTTGATGCTGG‑CGAACGATGAGGACCGTGTCGAACTGCAGCGCATCGTCGGCCTGCACAGTGACGACCCTGAt                     <  8:5629/149‑1 (MQ=255)                                                                                                                           cgcTGAACAACCCCGTGAGTGTCTTCAACACCACGTCGCTGAACGCCCAGTTCGAGCTGTCCCAGGCCATACGCCAGTTGATGCTGG‑CGAACGATGAGGACCGTGTCGAACTGCAGCGCATCGTCGGCCTGCACAGTGACGACCCTGAt                     <  6:126752/149‑1 (MQ=255)                                                                                                                             cTGAACAACCCCGTGAGTGTCTTCAACACCACGTCGCTGAACGCCCAGTTCGAGCTGTCCCAGGCCATACGCCAGTTGATGCTGG‑CGAACGATGAGGACCGTGTCGAACTGCAGCGCATCGTCGGCCTGCACAGTGACGACCCTGAt                     <  2:80366/147‑1 (MQ=255)                                                                                                                             cTGAACAACCCCGTGAGTGTCTTCAACACCACGTCGCTGAACGCCCAGTTCGAGCTGTCCCAGGCCATACGCCAGTTGATGCTGG‑CGAACGATGAGGACCGTGTCGAACTGCAGCGCATCCTCGGCCTGCACAGTGACGACCCTGAt                     >  1:80366/1‑147 (MQ=255)                                                                                                                              tGAACAACCCCGTGAGTGTCTTCAACACCACGTCGCTGAACGCCCAGTTCGAGCTGTCCCAGGCCATACGCCAGTTGATGCTGG‑CGAACGATGAGGACCGTGTCGAACTGCAGCGCATCGTCGGCCTGCACAGTGACGACCCTGATGcc                  >  8:158369/1‑149 (MQ=255)                                                                                                                               gAACAACCCCGTGAGTGTCTTCAACACCACGTCGCTGAACGCCCAGTTCGAGCTGTCCCAGGCCATACGCCAGTTGATGCTGG‑CGAACGATGAGGACCGTGTCGAACTg                                                         <  1:85540/109‑1 (MQ=255)                                                                                                                               gAACAACCCCGTGAGTGTCTTCAACACCACGTCGCTGAACGCCCAGTTCGAGCTGTCCCAGGCCATACGCCAGTTGATGCTGG‑CGAACGATGAGGACCGTGTCGAACTg                                                         >  2:85540/1‑109 (MQ=255)                                                                                                                                aacaacCCCGTGAGTGTCTTCAACACCACGTCGCTGAACGCCCAGTTCGAGCTGTCCCAGGCCATACGCCAGTTGATGCTGG‑CGAACGATGAGGACCGTGTCGAACTGCAGCGCATCGTCGGCCTGCACAGTGACGACCCTGATGcc                  >  1:119571/1‑147 (MQ=255)                                                                                                                                 agatccccGTGAGTGTCTTCAACACCACGTCGCTGAACGGCGAGTTCGAGCTGTCCCAGGCCATACGCCAGTTGATGCTCG‑CGAACGATGATGACCGTGTCGAACTGCAGCGCATCGTCGGCCTGCACAGTGACGACCCTGATGCCCAg               <  5:98150/145‑1 (MQ=255)                                                                                                                                   aacCCCGTGAGTGTCTTCAACACCACGTCGCTGAACGCCCAGTTCGAGCTGTCCCAGGCCATACGCCAGTTGATGCTGG‑CGAACGATGAGGACCGTGTCGAACTGCAGCGCATCGTCGGCCTGCACAGTGACGACCCTGATGCCCAggg             <  8:284724/149‑1 (MQ=255)                                                                                                                                      cccGTGAGTGTCTTCAACACCACGTCGCTGAACGCCCAGTTCGAGCTGTCCCAGGCCATACGCCAGTTGATGCTGG‑CGAACGATGAGGACCGTGTCGAACTGCAGCGCATCGTCGGCCTGCACAGTGACGACCCTGATGCCCAGGGttt          >  4:30074/1‑149 (MQ=255)                                                                                                                                        cGTGAGTGTCTTCAACACCACGTCGCTGAACGCCCAGTTCGAGCTGTCCCAGGCCATACGCCAGTTGATGCTGG‑CGAACGATGAGGACCGTGTCGAACTGCAGCGCATCGTCGGCCTGCACAGTGACGACCCTGATGCCCAGGGTTTGc        <  2:81881/149‑1 (MQ=255)                                                                                                                                             gtgtcTTCAACACCACGTCGCTGAACGCCCAGTTCGAGCTGTCCCAGGCCATACGCCAGTTGATGCTGG‑CGAACGATGAGGACCGTGTCGAACTGCAGCGCATCGTCGGCCTGCACAGTGACGACCCTGATGCCCAGGGTTTGCTGGTg   <  7:158369‑M2/144‑1 (MQ=255)                                                                                                                                                  ttCAACACCACGTCGCTGAACGCCCAGTTCGAGCTGTCCCAGGCCATACGCCAGTTGATGCTGG‑CGAACGATGAGGACCGTGTCGAACTGCAGCGCATCGTCGGCCTGCACAGTGACGACCCTGATGCCCAGGGTTTGCTGGTGc  >  5:298481/1‑145 (MQ=255)                                                                                                                                                  ttCAACACCACGTCGCTGAACGCCCAGTTCGAGCTGTCCCAGGCCATACGCCAGTTGATGCTGG‑CGAACGATGAGGACCGTGTCGAACTGCAGCGCATCGTCGGCCTGCACAGTGACGACCCTGATGCCCAGGGTTTGCTGGTGc  <  6:298481/145‑1 (MQ=255)                                                                                                                                                  |                                                                                                                                                  CACCCTCGGCGCGCTGATGTCGGACACCAATCCGTATCTGCTCAAGGACACTCACCCGGCGCGCAAGACGATCATTGATCTGCAGCGCGAGTTCACCGGCACCTATGACTCGGTCATGGTGGCGCTGAACAACCCCGTGAGTGTCTTCAACACCACGTCGCTGAACGCCCAGTTCGAGCTGTCCCAGGCCATACGCCAGTTGATGCTGG‑CGAACGATGAGGACCGTGTCGAACTGCAGCGCATCGTCGGCCTGCACAGTGACGACCCTGATGCCCAGGGTTTGCTGGTGC  >  NC_002947/3174783‑3175072

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.