| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 3406762 | 17 (0.340) | 3 (0.060) | 3/242 | NT | 10.9% | coding (280/744 nt) | PP_3019 | carbon‑nitrogen hydrolase family protein |
| ? | NC_002947 | = 3406814 | 33 (0.710) | coding (228/744 nt) | PP_3019 | carbon‑nitrogen hydrolase family protein | |||||
GTAGCAGATCGCCGGCGCCACCCGGTGTTCACCCACCTCCAGCAGCAATGCCTGATCACCTGGGGTGAAGTAAGGCAGCTCATCATCATGCAAGCGCTGCTTGGCATAGACCTGGCGCGGCGCCTCAGGGCAGAAGATGGGCATGCCGATGCGTAGGCCGTCGGGCGTCG‑‑GCAATGGCAGGCCCACGGCAACGGTAATGCCCAAGCGGTCGCAGGCTGCCTGCAGCGGGTCCAGGCGCGCGGAGGTGACGGGCAGGGCGGCCTGGCGCGCCACACTCGGCTCA > NC_002947/3406619‑3406901 | gTAGCAGATCGCCGGCGCCACCCGGTGTTCACCCACCTCCAGCAGCAATGCCTGATCACCTGGGGTGAAGTAAGGCAGCTCATCATCATGCAAGCGCTGCTTGGCATAGACCTGGCGCGGCGCCTCAGGGCAGAAGATGGGCATGCCg < 3:69623/148‑1 (MQ=255) gcCACCCGGTGTTCACCCACCTCCAGCAGCAATGCCTGATCACCTGGGGTGAAGTAAGGCAGCTCATCATCATGCAAGCGCTGCTTGGCATAGACCTGGCGCGGCGCCTCAGGGCAGAAGATGGGCATGCCGATGCGTAGGCCGTCggg > 8:186832/1‑149 (MQ=255) aCCCGGTGTTCACCCACCTCCAGCAGCAATGCCTGATCACCTGGGGTGAAGTAAGGCAGCTCATCATCATGCAAGCGCTGCTTGGCATAGACCTGGCGCGGCGCCTCAGGGCAGAAGATGGGCATGCCGATGCGTAGGCCGTCGGGCGt > 5:194023/1‑149 (MQ=255) ttCACCCACCTCCAGCAGCAATGCATGATCACCTGGGGTGAAGTAAGGCAGCTCATCATCATGAAAGCGCTGCTTGGCATAGACATGGCGCGGCGCCTCAGGGCAGAAGATGGGCATGCCGATGCGTAGGCCTTCTGGCGTCG‑‑GCAATg > 3:306585/1‑149 (MQ=255) acccaccTCCAGCAGCAATGCCTGATCACCTGGGGTGAAGTAAGGCAGCTCATCATCATGCAAGCGCTGCTTGGCATAGACCTGGCGCGGCGCCTCAGGGCAGAAGATGGGCATGCCGATGCGTAGGCCGTCGGGCGTCG‑‑GCAATgg > 2:248997/1‑147 (MQ=255) caATGCCTGATCACCTGGGGTGAAGTAAGGCAGCTCATCATCATGCAAGCGCTGCTTGGCATAGACCTGGCGCGGCGCCTCAGGGCAGAAGATGGGCATGCCGATGCGTAGGCCGTCGGGCGTCG‑‑GCAATGGCAGGCCCACGGCAACgg > 1:230546/1‑149 (MQ=255) aTGCCTGATCACCTGGGGTGAAGTAAGGCAGCTCATCATCATGCAAGCGCTGCTTGGCATAGACCTGGCGCGGCGCCTCAGGGCAGAAGATGGGCATtaccgttgccgtgggcctgccattgccgacgcccgacggcctacgcatcgg > 7:235068‑M1/1‑97 (MQ=255) aCCTGGGGTGAAGTAAGGCAGCTCATCATCATGCAAGCGCTGCTTGGCATAGACCTGGCGCGGCGCCTCAGGGCAGAAGATGGGCATtaccgttgccgtgggcctgccattgccgacgcccgacggcctacgcatcggcatgcccatct < 8:235068‑M1/149‑63 (MQ=255) cTGGGGTGAAGTAAGGCAGCTCATCATCATGCAAGCGCTGCTTGGCATAGACCTGGTGCGGCGCCTCAGGGCAGAAGATGGGCATtaccgttgccgtgggcctgccattgccgacgcccgacggcctacgcatcggcatgcccatcttc < 7:133514‑M1/149‑65 (MQ=255) cTGGGGTGAAGTAAGGCAGCTCATCATCATGCAAGCGCTGCTTGGCATAGACCTGGCGCGGCGCCTCAGGGCAGAAGATGGGCATGCCGATGCGTAGGCCGTCGGGCGTCG‑‑GCAATGGCAGGCCCACGGCAACGGTAATGCCCAAGCgg < 2:230546/149‑1 (MQ=255) gTAAGGCAGCTCATCATCATGCAAGCGCTGCTTGGCATAGACCTGGCGCGGCGCCTCAGGGCAGAAGATGGGCATGCCGATGCGTAGGCCGTCGGGCGTCG‑‑GCAATGGCAGGCCCACGGCAACGGTAATGCCCAAGCGGTCGCAGGctg > 4:219238/1‑149 (MQ=255) ggCAGCTCATCATCATGCAAGAGCTGCTTGGCATAGACCTGTCTCGGCGCCTCAGGGCAGAAGATGTGCATGCCGATGCGTAGGCCGTCGGGCGTCG‑‑GCAATGGCAGGCCCACGGCAACTTTAATGCCCAAGCTGTCGCAGGctgcctt < 6:194023/149‑2 (MQ=255) tcatcatcaTGCAAGCGCTGCTTGGCATAGACCTGGCGCGGCGCCTCAGGGCAGAAGATGGGCATGCCGATGCGTAGGCCGTCGGGCGTCG‑‑GCAATGGCAGGCCCACGGCAACGGTAATGCCCAAGCGGTCGCAGGCTGCCTGCAGCgg > 3:209126/1‑149 (MQ=255) tcatcatGCAAGCGCTGCTTGGCATAGACCTGGCGCGGCGCCTCAGGGCAGAAGATGGGCATGCCGATGCGTAGGCCGTCGGGCGTCG‑‑GCAATGGCAGGCCCACGGCAACGGTAATGCCCAAGCGGTCGCAGGCTGCCTGCAGCGGGTc < 4:209126/149‑1 (MQ=255) atcatGCAAGCGCTGCTTGGCATAGACCTGGCGCGGCGCCTCAGGGCAGAAGATGGGCATGCCGATGCGTAGGCCGTCGGGCGTCGTCGCAATGGCAGGCCCACGGCAACGGTAATGCCCAAGCGGTCGCAGGCTGCCTGCAGCGGGTc < 1:248997/149‑1 (MQ=255) atcatGCAAGCGCTGCTTGGCATAGACCTGGCGCGGCGCCTCAGGGCAGAAGATGGGCATGCCGATGCGTAGGCCGTCGGGCGTCG‑‑GCAATGGCAGGCCCACGGCAACGGTAATGCCCAAGCGGTCGCAGGCTGCCTGCAGCGGGTcc < 3:219238/148‑1 (MQ=255) tgctTGGCATAGACCTGGCGCGGCGCCTCAGGGCAGAAGATGGGCATGCCGATGCGTAGGCCGTCGGGCGTCG‑‑GCAATGGCAGGCCCACGGCAACGGTAATGCCCAAGCGGTCGCAGGCTGCCTGCAGCGGGTCCAGGCGCGCGGAGGt > 7:50956/1‑149 (MQ=255) cATAGACCTGGCGCGGCGCCTCAGGGCAGAAGATGGGCATGCCGATGCGTAGGCCGTCGGGCGTCG‑‑GCAATGGCAGGCCCACGGCAACGGTAATGCCCAAGCGGTCGCAGGCTGCCTGCAGCGGGTCCAGGCGCGCGGAGGTGACggg > 5:208267/1‑148 (MQ=255) tAGACCTGGCGCGGCGCCTCAGGGCAGAAGATGGGCATGCCGATGCGTAGGCCGTCGGGCGTCG‑‑GCAATGGCAGGCCCACGGCAACGGTAATGCCCAAGCGGTCGCAGGCTGCCTGCAGCGGGTCCAGGCGCGCGGAGGTGACGGGCAg < 7:186832/149‑1 (MQ=255) gcgcggcgcCTCAGGGCAGAAGATGGGCATGCCGATGCGTAGGCCGTCGGGCGTCG‑‑GCAATGGCAGGCCCACGGCAACGGTAATGCCCAAGCGGTCGCAGGCTGCCTGCAGc > 4:128826/1‑112 (MQ=255) gcgcggcgcCTCAGGGCAGAAGATGGGCATGCCGATGCGTAGGCCGTCGGGCGTCG‑‑GCAATGGCAGGCCCACGGCAACGGTAATGCCCAAGCGGTCGCAGGCTGCCTGCAGc < 3:128826/112‑1 (MQ=255) gaagaTGGGCATGCCGATGCGTAGGCCGTCGGGCGTCG‑‑GCAATGGCAGGCCCACGGCAACGGTAatgcccatcttctgccctgaggcgccgcaccaggtctatgccaagcagcgcttgcatgatgatgagctgccttacttcaccccag < 7:133514‑M2/149‑86 (MQ=255) agaTGGGCATGCCGATGCGTAGGCCGTCGGGCGTCG‑‑GCAATGGCAGGCCCACGGCAACGGTAatgcccatcttctgccctgaggcgccgcgccaggtctatgccaagcagcgcttgcatgatgatgagctgccttacttcaccccaggt < 8:235068‑M2/149‑88 (MQ=255) aTGCCGATGCGTAGGCCGTCGGGCGTCG‑‑GCAATGGCAGGCCCACGGCAACGGTAATGCCCAAGCGTTCGCAGGCTGCCTGCAGCGGGTCCAGGCGCGCGGAGGTGACGGGCAGGGCGGCCTGGCGCGCca < 2:285384/130‑1 (MQ=255) | GTAGCAGATCGCCGGCGCCACCCGGTGTTCACCCACCTCCAGCAGCAATGCCTGATCACCTGGGGTGAAGTAAGGCAGCTCATCATCATGCAAGCGCTGCTTGGCATAGACCTGGCGCGGCGCCTCAGGGCAGAAGATGGGCATGCCGATGCGTAGGCCGTCGGGCGTCG‑‑GCAATGGCAGGCCCACGGCAACGGTAATGCCCAAGCGGTCGCAGGCTGCCTGCAGCGGGTCCAGGCGCGCGGAGGTGACGGGCAGGGCGGCCTGGCGCGCCACACTCGGCTCA > NC_002947/3406619‑3406901 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |