New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3406762	17 (0.340)	3 (0.060)	3/242	NT	10.9%	coding (280/744 nt)	PP_3019	carbon‑nitrogen hydrolase family protein
	?	NC_002947	= 3406814	33 (0.710)					coding (228/744 nt)	PP_3019	carbon‑nitrogen hydrolase family protein

CTGGGGTGAAGTAAGGCAGCTCATCATCATGCAAGCGCTGCTTGGCATAGACCTGGCGCGGCGCCTCAGGGCAGAAGATGGGCATGCCGATGCGTAGGCCGTCGGGCGTCG‑‑GCAATGGCAGGCCCACGGCAACGGTAATGCCCAAGCGGTCGCAGGCTGCCTGCAGCGGGTCCAGGCGCGCGGAGGTGACGGGCAGGGCGGCCTGGCGCGCCACACTCGGCTCATAGCCGGTCAGCGACAGCTCGGGGAACACCACCAGTTCGGCACCCAGGGCCGCAG  >  NC_002947/3406678‑3406956                                                                                                                                           |                                                                                                                                               cTGGGGTGAAGTAAGGCAGCTCATCATCATGCAAGCGCTGCTTGGCATAGACCTGGCGCGGCGCCTCAGGGCAGAAGATGGGCATGCCGATGCGTAGGCCGTCGGGCGTCG‑‑GCAATGGCAGGCCCACGGCAACGGTAATGCCCAAGCgg                                                                                                                                    <  2:230546/149‑1 (MQ=255)           gTAAGGCAGCTCATCATCATGCAAGCGCTGCTTGGCATAGACCTGGCGCGGCGCCTCAGGGCAGAAGATGGGCATGCCGATGCGTAGGCCGTCGGGCGTCG‑‑GCAATGGCAGGCCCACGGCAACGGTAATGCCCAAGCGGTCGCAGGctg                                                                                                                          >  4:219238/1‑149 (MQ=255)               ggCAGCTCATCATCATGCAAGAGCTGCTTGGCATAGACCTGTCTCGGCGCCTCAGGGCAGAAGATGTGCATGCCGATGCGTAGGCCGTCGGGCGTCG‑‑GCAATGGCAGGCCCACGGCAACTTTAATGCCCAAGCTGTCGCAGGctgcctt                                                                                                                      <  6:194023/149‑2 (MQ=255)                     tcatcatcaTGCAAGCGCTGCTTGGCATAGACCTGGCGCGGCGCCTCAGGGCAGAAGATGGGCATGCCGATGCGTAGGCCGTCGGGCGTCG‑‑GCAATGGCAGGCCCACGGCAACGGTAATGCCCAAGCGGTCGCAGGCTGCCTGCAGCgg                                                                                                                >  3:209126/1‑149 (MQ=255)                        tcatcatGCAAGCGCTGCTTGGCATAGACCTGGCGCGGCGCCTCAGGGCAGAAGATGGGCATGCCGATGCGTAGGCCGTCGGGCGTCG‑‑GCAATGGCAGGCCCACGGCAACGGTAATGCCCAAGCGGTCGCAGGCTGCCTGCAGCGGGTc                                                                                                             <  4:209126/149‑1 (MQ=255)                          atcatGCAAGCGCTGCTTGGCATAGACCTGGCGCGGCGCCTCAGGGCAGAAGATGGGCATGCCGATGCGTAGGCCGTCGGGCGTCGTCGCAATGGCAGGCCCACGGCAACGGTAATGCCCAAGCGGTCGCAGGCTGCCTGCAGCGGGTc                                                                                                             <  1:248997/149‑1 (MQ=255)                          atcatGCAAGCGCTGCTTGGCATAGACCTGGCGCGGCGCCTCAGGGCAGAAGATGGGCATGCCGATGCGTAGGCCGTCGGGCGTCG‑‑GCAATGGCAGGCCCACGGCAACGGTAATGCCCAAGCGGTCGCAGGCTGCCTGCAGCGGGTcc                                                                                                            <  3:219238/148‑1 (MQ=255)                                       tgctTGGCATAGACCTGGCGCGGCGCCTCAGGGCAGAAGATGGGCATGCCGATGCGTAGGCCGTCGGGCGTCG‑‑GCAATGGCAGGCCCACGGCAACGGTAATGCCCAAGCGGTCGCAGGCTGCCTGCAGCGGGTCCAGGCGCGCGGAGGt                                                                                              >  7:50956/1‑149 (MQ=255)                                              cATAGACCTGGCGCGGCGCCTCAGGGCAGAAGATGGGCATGCCGATGCGTAGGCCGTCGGGCGTCG‑‑GCAATGGCAGGCCCACGGCAACGGTAATGCCCAAGCGGTCGCAGGCTGCCTGCAGCGGGTCCAGGCGCGCGGAGGTGACggg                                                                                        >  5:208267/1‑148 (MQ=255)                                                tAGACCTGGCGCGGCGCCTCAGGGCAGAAGATGGGCATGCCGATGCGTAGGCCGTCGGGCGTCG‑‑GCAATGGCAGGCCCACGGCAACGGTAATGCCCAAGCGGTCGCAGGCTGCCTGCAGCGGGTCCAGGCGCGCGGAGGTGACGGGCAg                                                                                     <  7:186832/149‑1 (MQ=255)                                                        gcgcggcgcCTCAGGGCAGAAGATGGGCATGCCGATGCGTAGGCCGTCGGGCGTCG‑‑GCAATGGCAGGCCCACGGCAACGGTAATGCCCAAGCGGTCGCAGGCTGCCTGCAGc                                                                                                                  >  4:128826/1‑112 (MQ=255)                                                        gcgcggcgcCTCAGGGCAGAAGATGGGCATGCCGATGCGTAGGCCGTCGGGCGTCG‑‑GCAATGGCAGGCCCACGGCAACGGTAATGCCCAAGCGGTCGCAGGCTGCCTGCAGc                                                                                                                  <  3:128826/112‑1 (MQ=255)                                                                          gaagaTGGGCATGCCGATGCGTAGGCCGTCGGGCGTCG‑‑GCAATGGCAGGCCCACGGCAACGGTAatgcccatcttctgccctgaggcgccgcaccaggtctatgccaagcagcgcttgcatgatgatgagctgccttacttcaccccag                                                           <  7:133514‑M2/149‑86 (MQ=255)                                                                            agaTGGGCATGCCGATGCGTAGGCCGTCGGGCGTCG‑‑GCAATGGCAGGCCCACGGCAACGGTAatgcccatcttctgccctgaggcgccgcgccaggtctatgccaagcagcgcttgcatgatgatgagctgccttacttcaccccaggt                                                         <  8:235068‑M2/149‑88 (MQ=255)                                                                                    aTGCCGATGCGTAGGCCGTCGGGCGTCG‑‑GCAATGGCAGGCCCACGGCAACGGTAATGCCCAAGCGTTCGCAGGCTGCCTGCAGCGGGTCCAGGCGCGCGGAGGTGACGGGCAGGGCGGCCTGGCGCGCca                                                                    <  2:285384/130‑1 (MQ=255)                                                                                       ccGATGCGTAGGCCGTCGGGCGTCG‑‑GCAATGGCAGGCCCACGGCAACGGTAatgcccatcttctgccctgaggcgccgcgccaggtctatgccaagcagcgcttgcatgatgatgagctgccttacttcaccccaggtgatcaggcat                                               >  7:235068‑M2/1‑51 (MQ=255)                                                                                        cGATGCGTAGGCCGTCGGGCGTCG‑‑GCAATGGCAGGCCCACGGCAACGGTAATGCCCAAGCGGTCGCAGGCTGCCTGCAGCGGGTCCAGGCGCGCGGAGGTGACGGGCAGGGCGGCCTGGCGCGCCACACTCGGCTCATAGCCGGTCAGc                                             <  6:208267/149‑1 (MQ=255)                                                                                              gTAGGCCGTCGGGCGTCG‑‑GCAATGGCAGGCCCACGGCAACGGTAATGCCCAAGCGGTCGCAGGCTGCCTGCAGCGGGTCCAGGCGCGCGGAGGTGACGGGCAGGGCGGCCTGGCGCGCCACACTCGGCTCATAGCCg                                                   >  2:300987/1‑137 (MQ=255)                                                                                              gTAGGCCGTCGGGCGTCG‑‑GCAATGGCAGGCCCACGGCAACGGTAATGCCCAAGCGGTCGCAGGCTGCCTGCAGCGGGTCCAGGCGCGCGGAGGTGACGGGCAGGGCGGCCTGGCGCGCCACACTCGGCTCATAGCCg                                                   <  1:300987/137‑1 (MQ=255)                                                                                                  gCCGTCGGGCGTCG‑‑GCAATGGCAGGCCCACGGCAACGGTAATGCCCAAGCGGTCGCAGGCTGCCTGCAGCCGGTCCAGGCGCGCGGAGGTGACGGGCAGGGCGGCCTGGCGCGCCACACTCGGCTCATAGCCGGTCAGCGACAGCTCgg                                   >  6:75252/1‑149 (MQ=255)                                                                                                          gCGTCG‑‑GCAATGGCAGGCCCACGGCAACGGTAATGCCCAAGCGGTCGCAGGCTGCCTGCAGCGGGTCCAGGCGCGCGGAGGTGACGGGCAGGGCGGCCTGGCGCGCCACACTCGGCTCATAGCCGGTCAGc                                             <  1:216142/131‑1 (MQ=255)                                                                                                          gCGTCG‑‑GCAATGGCAGGCCCACGGCAACGGTAATGCCCAAGCGGTCGCAGGCTGCCTGCAGCGGGTCCAGGCGCGCGGAGGTGACGGGCAGGGCGGCCTGGCGCGCCACACTCGGCTCATAGCCGGTCAGc                                             >  2:216142/1‑131 (MQ=255)                                                                                                               g‑‑gCAATGGCAGGCCCACGGCAACGGTAATGCCCAAGCGGTCGCAGGCTGCCTGCAGCGGGTCCAGGCGCGCGGAGGTGACGGGCAGGGCGGCCTGGCGCGCCACACTCGGCTCATAGCCGGTCAGc                                             >  7:110272/1‑126 (MQ=255)                                                                                                               g‑‑gCAATGGCAGGCCCACGGCAACGGTAATGCCCAAGCGGTCGCAGGCTGCCTGCAGCGGGTCCAGGCGCGCGGAGGTGACGGGCAGGGCGGCCTGGCGCGCCACACTCGGCTCATAGCCGGTCAGc                                             <  8:110272/126‑1 (MQ=255)                                                                                                               g‑‑gCAATGGCAGGCCCACGGCAACGGTAATGCCCAAGCGGTCGCAGGCTGCCTGCAGCGGGTCCAGGCGCGCGGAGGTGACGGGCAGGGCGGCCTGGCGCGCCACACTCGGCTCATAGCCGGTCAGCGACAGCTCGGGGAACACCACCAg                      >  6:290545/1‑149 (MQ=255)                                                                                                                  gCAATGGCAGGCCCACGGCAACGGTAATGCCCAAGCGGTCGCAGGCTGCCTGCAGCGGGTCCAGGCGCGCGGAGGTGACGGGCAGGGCGGCCTGGCGCGCCACACTCGGCTCATAGCCGGTCAGc                                             >  6:273235/1‑125 (MQ=255)                                                                                                                  gCAATGGCAGGCCCACGCCAACGGTAATGCCCAAGCGGTCGCAGGCTGCCTGCAGCGGGTCCAGGCGCGCGGAGGTGACGGGCAGGGCGGCCTGGCGCGCCACACTCGGCTCATAGCCGGTCAGc                                             <  5:273235/125‑1 (MQ=255)                                                                                                                     aTGGCAGGCCCACGGCAACGGTAATGCCCAAGCGGTCGCAGGCTGCCTGCAGCGGGTCCAGGCGCGCGGAGGTGACGGGCAGGGCGGCCTGGCGCGCCACACTCGGCTCATAGCCGGTCAGCGACAGCTCgggg                                 >  3:251404/1‑134 (MQ=255)                                                                                                                     aTGGCAGGCCCACGGCAACGGTAATGCCCAAGCGGTCGCAGGCTGCCTGCAGCGGGTCCAGGCGCGCGGAGGTGACGGGCAGGGCGGCCTGGCGCGCCACACTCGGCTCATAGCCGGTCAGCGACAGCTCgggg                                 <  4:251404/134‑1 (MQ=255)                                                                                                                      tGGCAGGCCCACGGCAACGGTAATGCCCAAGCGGTCGCAGGCTGCCTGCAGCGGGTCCAGGCGCGCGGAGGTGACGGGCAGGGCGGCCTGGCGCGCCTCACTCGGCTCATAGCCGGTCAGCGa                                           >  7:285237/1‑123 (MQ=255)                                                                                                                      tGGCAGGCCCACGGCAACGGTAATGCCCAAGCGGTCGCAGGCTGCCTGCAGCGGGTCCAGGCGCGCGGAGGTGACGGGCAGGGCGGCCTGGCGCGCCTCACTCGGCTCATAGCCGGTCAGCGa                                           <  8:285237/123‑1 (MQ=255)                                                                                                                      tGGCAGGCCCACGGCAACGGTAATGCCCAAGCGGTCGCAGGCTGCCTGCAGCGGGTCCAGGCGCGCGGAGGTGACGGGCAGGGCGGCCTGGCGCGCCACACTCGGCTCATAGCCGGTCAGCGACAGCTCGGGGAACACCACCAGTTCgg                 >  2:178775/1‑149 (MQ=255)                                                                                                                          aGGCCCACGGCAACGGTAATGCCCAAGCGGTCGCAGGCTGCCTGCAGCGGGTCCAGGCGCGCGGAGGTGACGGGCAGGGCGGCCTGGCGCGCCACACTCGGCTCATAGCCGGTCa                                               >  2:272727/1‑115 (MQ=255)                                                                                                                          aGGCCCACGGCAACGGTAATGCCCAAGCGGTCGCAGGCTGCCTGCAGCGGGTCCAGGCGCGCGGAGGTGACGGGCAGGGCGGCCTGGCGCGCCACACTCGGCTCATAGCCGGTCa                                               <  1:272727/115‑1 (MQ=255)                                                                                                                             cccACGGCAACGGTAATGCCCAAGCGGTCGCAGGCTGCCTGCAGCGGGTCCAGGCGCGCGGAGGTGACGGGCAGGGCGGCCTGGCGCGCCACACTCGGCTCATAGCCGGTCAGCGACAGCTCGGGGAACACCACCAGTTCGGCACCCAg          >  2:238637/1‑149 (MQ=255)                                                                                                                                    cAACGGTAATGCCCAAGCGGTCGCAGGCTGCCTGCAGCGGGTCCAGGCGCGCGGAGGTGACGGGCAGGGCGGCCTGGCGCGCCACACTCGGCTCATAGCCGGTCAGCGACAGCTCGGGGAACACCACCAGTTCGGCACCCAGGGCCGCa   <  1:238637/149‑1 (MQ=255)                                                                                                                                     aaCGGTAATGCCCAAGCGGTCGCAGGCTGCCTGCAGCGGGTCCAGGCGCGCGGAGGTGACGGGCAGGGCGGCCTGGCGCGCCACACTCGGCTCATAGCCGGTCAGCGACAGCTCGGGGAACACCACCAGTTCGGCACCCAGGGCCGCAg  >  2:161163/1‑149 (MQ=255)                                                                                                                                        ggTAATGCCCAAGCGGTCGCATGCTGCCTGCAGCGGGTCCAGGCGCGCGGAGGTGACGGGCAGGGCGGCCTGGCGCGCCACACTCGGCt                                                           >  3:45605/1‑89 (MQ=255)                                                                                                                                        ggTAATGCCCAAGCGGTCGCAGGCTGCCTGCAGCGGGTCCAGGCGCGCGGAGGTGACGGGCAGGGCGGCCTGGCGCGCCACACTCGGCt                                                           <  4:45605/89‑1 (MQ=255)                                                                                                                                          tAATGCCCAAGCGGTCGCAGGCTGCCTGCAGCGGGTCCAGGCGCGCGGAGGTGACGGGCAGGGCGGCCTGGCGCGCCACACTCGGCTCATAGCCGGTCAGCGACAGCTCGGGGAACACCACCAGTTCGGc                <  4:11929/130‑1 (MQ=255)                                                                                                                                          tAATGCCCAAGCGGTCGCAGGCTGCCTGCAGCGGGTCCAGGCGCGCGGAGGTGACGGGCAGGGCGGCCTGGCGCGCCACACTCGGCTCATAGCCGGTCAGCGACAGCTCGGGGAACACCACCAGTTCGGc                >  3:11929/1‑130 (MQ=255)                                                                                                                                           |                                                                                                                                               CTGGGGTGAAGTAAGGCAGCTCATCATCATGCAAGCGCTGCTTGGCATAGACCTGGCGCGGCGCCTCAGGGCAGAAGATGGGCATGCCGATGCGTAGGCCGTCGGGCGTCG‑‑GCAATGGCAGGCCCACGGCAACGGTAATGCCCAAGCGGTCGCAGGCTGCCTGCAGCGGGTCCAGGCGCGCGGAGGTGACGGGCAGGGCGGCCTGGCGCGCCACACTCGGCTCATAGCCGGTCAGCGACAGCTCGGGGAACACCACCAGTTCGGCACCCAGGGCCGCAG  >  NC_002947/3406678‑3406956

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.